Rmu_sc0000758.1_g000014

AMMECR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000758.1
OG0004168
Physical Location & Seq
Reverse (-)
60425 .. 61895
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
atgtcctccagtgctatgagggaccgcaggtttcccccaatacaagctaaggaattaccatatttggaatgtacagtttccattttgactgattatgaaactgctgatgactaccttgattgggaggttgggaagcatggtataatcattgagtttactgatccgggctatggtacaaggcgcaatgcaacatacttgcctgaggttgctgcgcatgaaggttggactcaaatagaagcaattgactcattgatgcggaaagcagggtatactgggaccatcaccgagtcacttcggaagcgtatacgattgacccggtaccagagctcattatatacaatgcaccacagcgactacgtttcttatgtgaaggcaagcagaggcgcagctacatctggctccaagtccagcaatcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AMMECR1

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

6.91

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMMECR1 PF01871 3 - 110 4.3e-30 AMMECR1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 18
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 318
AccI GTMKAC 2 cut(s) 269, 304
AciI CCGC 2 cut(s) 25, 256
AclWI GGATC 1 cut(s) 155
AfaI GTAC 3 cut(s) 73, 175, 320
AfiI CCNNNNNNNGG 2 cut(s) 121, 170
AluBI AGCT 3 cut(s) 47, 327, 389
AluI AGCT 3 cut(s) 47, 327, 389
Alw21I GWGCWC 1 cut(s) 329
AlwI GGATC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 209, 386
Asp718I GGTACC 1 cut(s) 318
AspLEI GCGC 3 cut(s) 183, 214, 386
AspS9I GGNCC 2 cut(s) 22, 276
AsuC2I CCSGG 2 cut(s) 165, 316
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 2 cut(s) 22, 276
AxyI CCTNAGG 1 cut(s) 201
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 196, 398
BccI CCATC 1 cut(s) 287
BcnI CCSGG 2 cut(s) 165, 316
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 2 cut(s) 210, 387
BlsI GCNGC 2 cut(s) 211, 388
Bme1390I CCNGG 2 cut(s) 165, 316
Bme18I GGWCC 2 cut(s) 22, 276
BmgT120I GGNCC 2 cut(s) 22, 276
BmiI GGNNCC 4 cut(s) 23, 277, 320, 400
BmrFI CCNGG 2 cut(s) 165, 316
BmrI ACTGGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 48
BpuMI CCSGG 2 cut(s) 165, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 170
Bse1I ACTGG 2 cut(s) 9, 277
Bse21I CCTNAGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 190
BseLI CCNNNNNNNGG 2 cut(s) 121, 170
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 9, 277
BseXI GCAGC 2 cut(s) 196, 398
BshNI GGYRCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 329
BsiSI CCGG 2 cut(s) 164, 316
BslFI GGGAC 2 cut(s) 35, 289
BslI CCNNNNNNNGG 2 cut(s) 121, 170
BsmFI GGGAC 2 cut(s) 35, 289
Bsp1286I GDGCHC 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 25, 256
BspCNI CTCAG 1 cut(s) 193
BspLI GGNNCC 4 cut(s) 23, 277, 320, 400
BspMI ACCTGC 1 cut(s) 18
BspPI GGATC 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 318
BsrDI GCAATG 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 71
BsrI ACTGG 2 cut(s) 9, 277
BssMI GATC 1 cut(s) 160
BssNAI GTATAC 2 cut(s) 270, 305
Bst1107I GTATAC 2 cut(s) 270, 305
Bst4CI ACNGT 1 cut(s) 76
BstAUI TGTACA 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 2 cut(s) 48, 201
BstHHI GCGC 3 cut(s) 183, 214, 386
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 163, 314
BstV1I GCAGC 2 cut(s) 196, 398
BstZ17I GTATAC 2 cut(s) 270, 305
Bsu36I CCTNAGG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 16
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 376
CfoI GCGC 3 cut(s) 183, 214, 386
Cfr13I GGNCC 2 cut(s) 22, 276
Csp6I GTAC 3 cut(s) 72, 174, 319
CviAII CATG 2 cut(s) 137, 215
CviJI RGCY 5 cut(s) 47, 168, 327, 389, 399
CviKI_1 RGCY 5 cut(s) 47, 168, 327, 389, 399
CviQI GTAC 3 cut(s) 72, 174, 319
DdeI CTNAG 2 cut(s) 48, 201
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Ecl136II GAGCTC 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 22, 276
Eco53kI GAGCTC 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 329
FaeI CATG 2 cut(s) 140, 218
FaqI GGGAC 2 cut(s) 35, 289
FatI CATG 2 cut(s) 136, 214
FblI GTMKAC 2 cut(s) 269, 304
Fnu4HI GCNGC 2 cut(s) 210, 387
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 210, 387
FspI TGCGCA 1 cut(s) 213
GlaI GCGC 3 cut(s) 182, 213, 385
GluI GCNGC 2 cut(s) 210, 387
HapII CCGG 2 cut(s) 164, 316
HhaI GCGC 3 cut(s) 183, 214, 386
Hin1II CATG 2 cut(s) 140, 218
Hin6I GCGC 3 cut(s) 181, 212, 384
HinP1I GCGC 3 cut(s) 181, 212, 384
HinfI GANTC 3 cut(s) 226, 245, 287
HpaII CCGG 2 cut(s) 164, 316
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 3 cut(s) 156, 270, 305
Hpy188I TCNGA 1 cut(s) 297
Hpy8I GTNNAC 3 cut(s) 156, 270, 305
HpyAV CCTTC 2 cut(s) 212, 364
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 188, 343
HpyF3I CTNAG 2 cut(s) 48, 201
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 2 cut(s) 140, 218
HspAI GCGC 3 cut(s) 181, 212, 384
KpnI GGTACC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 404
LpnPI CCDG 9 cut(s) 13, 22, 177, 213, 249, 258, 329, 335, 381
Lsp1109I GCAGC 2 cut(s) 196, 398
LweI GCATC 1 cut(s) 243
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 288
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MfeI CAATTG 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 2 cut(s) 53, 240
MlyI GAGTC 3 cut(s) 220, 239, 296
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 5 cut(s) 12, 16, 118, 196, 374
MspI CCGG 2 cut(s) 164, 316
MspR9I CCNGG 2 cut(s) 165, 316
MunI CAATTG 1 cut(s) 240
NciI CCSGG 2 cut(s) 165, 316
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 140, 218
NlaIV GGNNCC 4 cut(s) 23, 277, 320, 400
NmuCI GTSAC 1 cut(s) 288
NsbI TGCGCA 1 cut(s) 213
PkrI GCNGC 2 cut(s) 211, 388
PleI GAGTC 3 cut(s) 220, 239, 295
PpsI GAGTC 3 cut(s) 220, 239, 295
Psp124BI GAGCTC 1 cut(s) 329
PspN4I GGNNCC 4 cut(s) 23, 277, 320, 400
PspPI GGNCC 2 cut(s) 22, 276
RsaI GTAC 3 cut(s) 73, 175, 320
RsaNI GTAC 3 cut(s) 72, 174, 319
SacI GAGCTC 1 cut(s) 329
SatI GCNGC 2 cut(s) 210, 387
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 22, 276
SchI GAGTC 3 cut(s) 220, 239, 296
ScrFI CCNGG 2 cut(s) 165, 316
SduI GDGCHC 1 cut(s) 329
SetI ASST 9 cut(s) 32, 49, 117, 129, 207, 223, 329, 360, 391
SfaNI GCATC 1 cut(s) 243
SinI GGWCC 2 cut(s) 22, 276
Sse9I AATT 2 cut(s) 53, 240
SsiI CCGC 2 cut(s) 25, 256
SstI GAGCTC 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 163, 314
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 360
TasI AATT 2 cut(s) 53, 240
TatI WGTACW 1 cut(s) 71
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 2 cut(s) 209, 386
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 2 cut(s) 111, 231
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 22, 276
XmiI GTMKAC 2 cut(s) 269, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.