Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000918.1

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

199414 .. 200272

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000918.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgtccgtcggaatcgtcacgctcgaaatgcggagccacaactccacgagtagcgacgccatgagcggagcgacgccggaagtgaaccaaacccgattcaccgtcgccgatgacgtcttgagtttttccgatccacgccatgagtttcatcttcgcaaacagaaaacacccgcaggtaaaataggaggcattgctgtggttgatttggatcgagagaggaaagggatggagtctaggatggatcagtatgagctgatggagcagatcggccggggagctttcggagccgcgattttggttcatcacaaggttgagaagaagaagtatgtgttgaagaagatccggcttgcgaggcagacggagaggtgccggagatctgctcatcaagagatggctcttattgcccggattcagcacccgtacattgtggaatttaaggaagcctgggttgagaaggtgaggcacttttgttcatgtgtgtatgtggatgcgtataaatcactttctggaattttgtatttgattaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

176

Amino Acids

20.12

Weight (kDa)

9.4

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	366
AccBSI	CCGCTC	1 cut(s)	66
AccII	CGCG	1 cut(s)	290
AciI	CCGC	4 cut(s)	31, 66, 171, 288
AclWI	GGATC	4 cut(s)	125, 216, 249, 334
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	2 cut(s)	431, 510
AcyI	GRCGYC	3 cut(s)	57, 74, 114
AfaI	GTAC	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	2 cut(s)	253, 278
AluI	AGCT	2 cut(s)	253, 278
AlwI	GGATC	4 cut(s)	125, 216, 249, 334
AoxI	GGCC	1 cut(s)	268
ApoI	RAATTY	2 cut(s)	431, 510
AsuC2I	CCSGG	2 cut(s)	272, 406
AsuHPI	GGTGA	2 cut(s)	91, 469
BanI	GGYRCC	1 cut(s)	366
BauI	CACGAG	1 cut(s)	46
BccI	CCATC	4 cut(s)	220, 232, 250, 385
BciT130I	CCWGG	1 cut(s)	445
BcnI	CCSGG	2 cut(s)	272, 406
BfaI	CTAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	164
BglII	AGATCT	1 cut(s)	374
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	3 cut(s)	272, 406, 445
BmiI	GGNNCC	3 cut(s)	35, 286, 368
BmrFI	CCNGG	3 cut(s)	272, 406, 445
BmsI	GCATC	1 cut(s)	478
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
BpuEI	CTTGAG	1 cut(s)	139
BpuMI	CCSGG	2 cut(s)	272, 406
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	3 cut(s)	57, 74, 114
BsaJI	CCNNGG	2 cut(s)	271, 444
Bse3DI	GCAATG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	271, 444
BseGI	GGATG	3 cut(s)	231, 243, 493
BseJI	GATNNNNATC	1 cut(s)	207
BseMI	GCAATG	1 cut(s)	189
BseX3I	CGGCCG	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	366
BsiEI	CGRYCG	1 cut(s)	271
BsiSI	CCGG	5 cut(s)	77, 271, 343, 370, 406
BsnI	GGCC	1 cut(s)	270
Bsp143I	GATC	6 cut(s)	130, 208, 241, 264, 339, 374
BspACI	CCGC	4 cut(s)	31, 66, 171, 288
BspANI	GGCC	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	35, 286, 368
BspMI	ACCTGC	1 cut(s)	164
BspPI	GGATC	4 cut(s)	125, 216, 249, 334
BspT107I	GGYRCC	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	271, 444
BssMI	GATC	6 cut(s)	130, 208, 241, 264, 339, 374
BssNI	GRCGYC	3 cut(s)	57, 74, 114
BssSI	CACGAG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	3 cut(s)	57, 74, 114
BstC8I	GCNNGC	1 cut(s)	348
BstF5I	GGATG	3 cut(s)	231, 243, 493
BstFNI	CGCG	1 cut(s)	290
BstKTI	GATC	6 cut(s)	133, 211, 244, 267, 342, 377
BstMBI	GATC	6 cut(s)	130, 208, 241, 264, 339, 374
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 259, 284, 352, 401
BstNI	CCWGG	1 cut(s)	445
BstSCI	CCNGG	3 cut(s)	270, 404, 443
BstUI	CGCG	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	339, 374
BstYI	RGATCY	2 cut(s)	339, 374
BstZI	CGGCCG	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	231, 243, 493
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	348
CseI	GACGC	2 cut(s)	65, 82
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	3 cut(s)	61, 140, 474
CviJI	RGCY	8 cut(s)	36, 253, 270, 278, 287, 346, 395, 443
CviKI_1	RGCY	8 cut(s)	36, 253, 270, 278, 287, 346, 395, 443
CviQI	GTAC	1 cut(s)	421
DpnI	GATC	6 cut(s)	132, 210, 243, 266, 341, 376
DpnII	GATC	6 cut(s)	130, 208, 241, 264, 339, 374
EaeI	YGGCCR	1 cut(s)	268
EagI	CGGCCG	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	268
Eco52I	CGGCCG	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	443
FaeI	CATG	3 cut(s)	64, 143, 477
FaiI	YATR	7 cut(s)	62, 141, 249, 327, 475, 483, 495
FatI	CATG	3 cut(s)	60, 139, 473
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	3 cut(s)	238, 250, 500
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	5 cut(s)	77, 271, 343, 370, 406
HgaI	GACGC	2 cut(s)	65, 82
Hin1I	GRCGYC	3 cut(s)	57, 74, 114
Hin1II	CATG	3 cut(s)	64, 143, 477
HinfI	GANTC	4 cut(s)	12, 96, 230, 409
HpaII	CCGG	5 cut(s)	77, 271, 343, 370, 406
HphI	GGTGA	2 cut(s)	91, 469
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	3 cut(s)	11, 130, 284
Hpy188III	TCNNGA	4 cut(s)	118, 212, 386, 507
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	4 cut(s)	11, 59, 76, 107
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 259, 284, 352, 401
HpySE526I	ACGT	1 cut(s)	114
Hsp92I	GRCGYC	3 cut(s)	57, 74, 114
Hsp92II	CATG	3 cut(s)	64, 143, 477
Kzo9I	GATC	6 cut(s)	130, 208, 241, 264, 339, 374
LmnI	GCTCC	5 cut(s)	33, 68, 259, 275, 284
LpnPI	CCDG	9 cut(s)	90, 159, 284, 356, 383, 419, 430, 457, 492
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	6 cut(s)	132, 210, 243, 266, 341, 376
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	6 cut(s)	130, 208, 241, 264, 339, 374
MboII	GAAGA	5 cut(s)	143, 328, 331, 346, 349
MflI	RGATCY	2 cut(s)	339, 374
MluCI	AATT	2 cut(s)	431, 510
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	179, 210, 345, 357, 453
MseI	TTAA	2 cut(s)	435, 525
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	5 cut(s)	77, 271, 343, 370, 406
MspR9I	CCNGG	3 cut(s)	272, 406, 445
MvaI	CCWGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	5 cut(s)	28, 259, 284, 352, 401
NciI	CCSGG	2 cut(s)	272, 406
NdeII	GATC	6 cut(s)	130, 208, 241, 264, 339, 374
NlaIII	CATG	3 cut(s)	64, 143, 477
NlaIV	GGNNCC	3 cut(s)	35, 286, 368
NmuCI	GTSAC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 111
PfeI	GAWTC	3 cut(s)	12, 96, 409
PkrI	GCNGC	1 cut(s)	289
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	35, 286, 368
PsuI	RGATCY	2 cut(s)	339, 374
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	435, 525
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	6 cut(s)	130, 208, 241, 264, 339, 374
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	3 cut(s)	272, 406, 445
SetI	ASST	7 cut(s)	117, 178, 255, 280, 312, 368, 459
SfaNI	GCATC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	2 cut(s)	431, 510
SsiI	CCGC	4 cut(s)	31, 66, 171, 288
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	270, 404, 443
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	2 cut(s)	24, 211
TasI	AATT	2 cut(s)	431, 510
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	3 cut(s)	12, 96, 409
Tru1I	TTAA	2 cut(s)	435, 525
Tru9I	TTAA	2 cut(s)	435, 525
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	137, 290, 462
TspGWI	ACGGA	1 cut(s)	374
XapI	RAATTY	2 cut(s)	431, 510
XspI	CTAG	1 cut(s)	234
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.