Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Forward (+)

22415752 .. 22417984

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCCGTCGGAATCGTCACGCTCGAAATGTGGAGCCACGACTCCACGAGTAGCGACGCCATGAGCGGAGCGATGCGGAAAAGATCGGCTTGCGAGGCGGACGGAGCGGTGCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGGATTCGGCACCGTACATTGCGGAATTTAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCCTTTGAATCTTGTGAAGGTGGAGATATGGCTGAGTTGATGAAGAAATCCAATGGGGTTTATTTTCTGAGGAGTTTTTTAAGATCAATCTGCTGGTCTTTTTTGCGGTGTTCCGATATATTTCTTACTAAGGATCATGATGTTCGTCTTGGGGATTTTGGTCTTGCTAAAACTTTAAAGGCGGATGACTTGGCTTCTTCGGTTGTAGGAACCCCCAATTACATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGCTTCAAATATGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

163

Amino Acids

18.27

Weight (kDa)

8.88

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	101 - 163	6.1e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	156
AccBSI	CCGCTC	2 cut(s)	66, 107
AciI	CCGC	8 cut(s)	66, 76, 98, 107, 112, 169, 322, 398
AclWI	GGATC	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	224, 478
AjnI	CCWGG	1 cut(s)	184
AlwI	GGATC	1 cut(s)	357
ApoI	RAATTY	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	46
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	148
BfaI	CTAG	1 cut(s)	490
BglII	AGATCT	1 cut(s)	116
Bme1390I	CCNGG	2 cut(s)	148, 186
BmiI	GGNNCC	3 cut(s)	35, 158, 427
BmrFI	CCNGG	2 cut(s)	148, 186
BmsI	GCATC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpuMI	CCSGG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	240, 275
BseRI	GAGGAG	1 cut(s)	301
BshNI	GGYRCC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	83, 116, 299, 349
BspACI	CCGC	8 cut(s)	66, 76, 98, 107, 112, 169, 322, 398
BspCNI	CTCAG	2 cut(s)	241, 276
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	35, 158, 427
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	156
BsrBI	CCGCTC	2 cut(s)	66, 107
BsrDI	GCAATG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	4 cut(s)	83, 116, 299, 349
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	91, 456
BstDEI	CTNAG	3 cut(s)	249, 284, 345
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	4 cut(s)	86, 119, 302, 352
BstMBI	GATC	4 cut(s)	83, 116, 299, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 104, 143, 209
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	146, 184
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	91, 456
CciI	TCATGA	1 cut(s)	352
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	3 cut(s)	61, 353, 439
CviJI	RGCY	7 cut(s)	36, 89, 137, 184, 248, 410, 474
CviKI_1	RGCY	7 cut(s)	36, 89, 137, 184, 248, 410, 474
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	3 cut(s)	249, 284, 345
DpnI	GATC	4 cut(s)	85, 118, 301, 351
DpnII	GATC	4 cut(s)	83, 116, 299, 349
DraI	TTTAAA	1 cut(s)	393
EciI	GGCGGA	2 cut(s)	113, 413
Eco32I	GATATC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	487
FaeI	CATG	3 cut(s)	64, 356, 442
FaiI	YATR	8 cut(s)	62, 206, 245, 335, 354, 440, 471, 483
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FatI	CATG	3 cut(s)	60, 352, 438
FokI	GGATG	1 cut(s)	413
FspBI	CTAG	1 cut(s)	490
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	64, 356, 442
HinfI	GANTC	4 cut(s)	12, 41, 151, 224
HpaII	CCGG	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	11, 285, 331
Hpy188III	TCNNGA	3 cut(s)	128, 353, 446
Hpy99I	CGWCG	2 cut(s)	11, 59
HpyAV	CCTTC	2 cut(s)	189, 227
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 104, 143, 209
HpyF3I	CTNAG	3 cut(s)	249, 284, 345
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	64, 356, 442
Kzo9I	GATC	4 cut(s)	83, 116, 299, 349
LmnI	GCTCC	3 cut(s)	33, 68, 104
LpnPI	CCDG	5 cut(s)	161, 171, 198, 295, 459
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	490
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	85, 118, 301, 351
MbiI	CCGCTC	2 cut(s)	66, 107
MboI	GATC	4 cut(s)	83, 116, 299, 349
MboII	GAAGA	2 cut(s)	271, 405
MflI	RGATCY	1 cut(s)	116
MluCI	AATT	2 cut(s)	172, 433
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	88, 279
MseI	TTAA	3 cut(s)	176, 296, 392
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	148, 186
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	95, 104, 143, 209
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	4 cut(s)	83, 116, 299, 349
NlaIII	CATG	3 cut(s)	64, 356, 442
NlaIV	GGNNCC	3 cut(s)	35, 158, 427
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	442
PagI	TCATGA	1 cut(s)	352
PciI	ACATGT	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	3 cut(s)	12, 151, 224
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	35, 158, 427
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	176, 296, 392
Sau3AI	GATC	4 cut(s)	83, 116, 299, 349
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	148, 186
SetI	ASST	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	63
Sse9I	AATT	2 cut(s)	172, 433
SsiI	CCGC	8 cut(s)	66, 76, 98, 107, 112, 169, 322, 398
SspMI	CTAG	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	146, 184
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	172, 433
TfiI	GAWTC	3 cut(s)	12, 151, 224
Tru1I	TTAA	3 cut(s)	176, 296, 392
Tru9I	TTAA	3 cut(s)	176, 296, 392
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.