Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Forward (+)

62696908 .. 62698906

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG442800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTCTTATTGCCTGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACTGGATACTGTGAAGGTGGAGATATGGCTGAGTTGATGAAGAAATCCAATGGGGTTTATTTTCCTGAGGAGAAACTATGCAGGTGGTTCACGCAGCTACTCTTGGCAGTTGAATACCTGCATTCAAATTATGTTCTACATCGTGATCTAAAATGTTCCAATATATTTCTTACTAAGGATCATGATGTTCGTCTTGGGGATTTTGGTCTTGCTAAAACTTTAAAGGCAGATGACTTGCCTTCTTCGGTTGTAGGAACCCCCAATTACATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTTTAGTTTGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

141

Amino Acids

16.16

Weight (kDa)

5.28

Isoelectric Point (pI)

20.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 140	6.7e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 137	1.4e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	159
Acc36I	ACCTGC	2 cut(s)	159, 213
AclWI	GGATC	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	200, 213, 394
AjnI	CCWGG	2 cut(s)	14, 53
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AlwI	GGATC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	41
AxyI	CCTNAGG	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	193
BciT130I	CCWGG	2 cut(s)	16, 55
BciVI	GTATCC	1 cut(s)	86
BfuAI	ACCTGC	2 cut(s)	159, 213
BfuI	GTATCC	1 cut(s)	86
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
Bme1390I	CCNGG	2 cut(s)	16, 55
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	16, 55
BsaJI	CCNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	94
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	16, 55
BseDI	CCNNGG	1 cut(s)	54
BseMII	CTCAG	2 cut(s)	108, 144
BseNI	ACTGG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	232, 265
BspCNI	CTCAG	2 cut(s)	109, 145
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	343
BspMI	ACCTGC	2 cut(s)	159, 213
BspPI	GGATC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	232, 265
Bst2UI	CCWGG	2 cut(s)	16, 55
Bst4CI	ACNGT	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	117, 153, 261
BstKTI	GATC	2 cut(s)	235, 268
BstMBI	GATC	2 cut(s)	232, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 78
BstNI	CCWGG	2 cut(s)	16, 55
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	14, 53
BstV1I	GCAGC	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	2 cut(s)	159, 213
Cac8I	GCNNGC	1 cut(s)	372
CciI	TCATGA	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	269, 355
CviJI	RGCY	5 cut(s)	5, 53, 116, 184, 390
CviKI_1	RGCY	5 cut(s)	5, 53, 116, 184, 390
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	3 cut(s)	117, 153, 261
DpnI	GATC	2 cut(s)	234, 267
DpnII	GATC	2 cut(s)	232, 265
DraI	TTTAAA	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	403
Eco81I	CCTNAGG	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	14, 53
EcoRV	GATATC	1 cut(s)	403
FaeI	CATG	2 cut(s)	272, 358
FaiI	YATR	8 cut(s)	75, 113, 166, 219, 251, 270, 356, 387
FatI	CATG	2 cut(s)	268, 354
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	272, 358
HinfI	GANTC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	4 cut(s)	152, 230, 269, 362
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	3 cut(s)	58, 95, 336
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	3 cut(s)	81, 168, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 78
HpyF3I	CTNAG	3 cut(s)	117, 153, 261
Hsp92II	CATG	2 cut(s)	272, 358
Kzo9I	GATC	2 cut(s)	232, 265
LpnPI	CCDG	9 cut(s)	28, 40, 67, 75, 154, 165, 218, 375, 391
Lsp1109I	GCAGC	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	234, 267
MboI	GATC	2 cut(s)	232, 265
MboII	GAAGA	2 cut(s)	139, 321
MluCI	AATT	3 cut(s)	41, 214, 349
MnlI	CCTC	1 cut(s)	148
MseI	TTAA	2 cut(s)	45, 308
MspR9I	CCNGG	2 cut(s)	16, 55
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	2 cut(s)	16, 55
MwoI	GCNNNNNNNGC	2 cut(s)	11, 78
NdeII	GATC	2 cut(s)	232, 265
NlaIII	CATG	2 cut(s)	272, 358
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	358
PagI	TCATGA	1 cut(s)	268
PaqCI	CACCTGC	1 cut(s)	159
PciI	ACATGT	1 cut(s)	354
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	183
PscI	ACATGT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	14, 53
PspGI	CCWGG	2 cut(s)	14, 53
PspN4I	GGNNCC	1 cut(s)	343
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	45, 308
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	232, 265
ScrFI	CCNGG	2 cut(s)	16, 55
SetI	ASST	4 cut(s)	106, 173, 186, 207
Sse9I	AATT	3 cut(s)	41, 214, 349
StyD4I	CCNGG	2 cut(s)	14, 53
TaaI	ACNGT	1 cut(s)	98
TasI	AATT	3 cut(s)	41, 214, 349
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	45, 308
Tru9I	TTAA	2 cut(s)	45, 308
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	41
XceI	RCATGY	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.