Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003605.1

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Forward (+)

70576 .. 73060

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003605.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgtccgtcggaatcgtcacgctcgaaatgcggagccacaactccacgagtagcgacgccatgagcggagcgacgccggaagtgaaccaccactgccgtcgatcgcaaagccgccgcggcctcagaacccgatttgccgtcgccgatgacgtcttgagtttttccgatccaccccatgagtttcatcttcgcaaacagaaaacacccgcaggtaaaataggaggcattgctgtggtttatttggatcgagagaggaaagggatggagtctaggatggatcagtatgagctgatggagcagatcggccggggagctttcggagccgcgattttggttcatcacaaggctgagaagaagaagtatgtgttgaagaagatccggcttgcgaggcagacggagcggtgccggagatctgctcatcaagagatggctcttattgcccggattcagcacccgtacattgtggaatttaaggaagcctgggttgagaaggtgaggcacttttgttcatgtgtaattttgtctatgccaaaggctcgtaccattttagtaaatggtgctgtgaggaagggggagcatttggtgccaccttctgcattggatatacttataggagttatttttcctgcaccttcagctagagtaaaggacgtggctcttgctggctcacaaggaagcaaagcgatgaaacaagtttcacagcaaatattgagttttgttgttaaggctgccggagaagcaagtatgcaacttgatctgcctttacttgcactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

258

Amino Acids

28.67

Weight (kDa)

10.01

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	2 cut(s)	402, 583
AccBSI	CCGCTC	2 cut(s)	66, 400
AccII	CGCG	2 cut(s)	117, 326
AciI	CCGC	8 cut(s)	31, 66, 112, 115, 117, 207, 324, 400
AclWI	GGATC	4 cut(s)	161, 252, 285, 370
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	467
AcuI	CTGAAG	1 cut(s)	618
AcyI	GRCGYC	3 cut(s)	57, 74, 150
AfaI	GTAC	2 cut(s)	458, 541
AgsI	TTSAA	1 cut(s)	370
AjiI	CACGTC	1 cut(s)	652
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	3 cut(s)	289, 314, 638
AluI	AGCT	3 cut(s)	289, 314, 638
AlwI	GGATC	4 cut(s)	161, 252, 285, 370
AoxI	GGCC	2 cut(s)	118, 304
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	467
AsuC2I	CCSGG	2 cut(s)	308, 442
AsuHPI	GGTGA	1 cut(s)	505
BanI	GGYRCC	2 cut(s)	402, 583
BauI	CACGAG	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	4 cut(s)	256, 268, 286, 421
BceAI	ACGGC	2 cut(s)	81, 122
BciT130I	CCWGG	1 cut(s)	481
BcnI	CCSGG	2 cut(s)	308, 442
BfaI	CTAG	2 cut(s)	270, 639
BfuAI	ACCTGC	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	5 cut(s)	112, 115, 118, 324, 729
BlsI	GCNGC	5 cut(s)	113, 116, 119, 325, 730
Bme1390I	CCNGG	3 cut(s)	308, 442, 481
BmgBI	CACGTC	1 cut(s)	652
BmiI	GGNNCC	4 cut(s)	35, 322, 404, 585
BmrFI	CCNGG	3 cut(s)	308, 442, 481
BplI	GAGNNNNNCTC	2 cut(s)	400, 432
BpuEI	CTTGAG	1 cut(s)	175
BpuMI	CCSGG	2 cut(s)	308, 442
BsaHI	GRCGYC	3 cut(s)	57, 74, 150
BsaJI	CCNNGG	3 cut(s)	115, 307, 480
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	3 cut(s)	115, 307, 480
BseGI	GGATG	2 cut(s)	267, 279
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	136, 339
BseX3I	CGGCCG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	715
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	2 cut(s)	117, 326
Bsh1285I	CGRYCG	2 cut(s)	104, 307
BshFI	GGCC	2 cut(s)	120, 306
BshNI	GGYRCC	2 cut(s)	402, 583
BsiEI	CGRYCG	2 cut(s)	104, 307
BsiSI	CCGG	6 cut(s)	77, 307, 379, 406, 442, 732
BsnI	GGCC	2 cut(s)	120, 306
Bsp143I	GATC	8 cut(s)	101, 166, 244, 277, 300, 375, 410, 754
BspACI	CCGC	8 cut(s)	31, 66, 112, 115, 117, 207, 324, 400
BspANI	GGCC	2 cut(s)	120, 306
BspCNI	CTCAG	2 cut(s)	135, 340
BspFNI	CGCG	2 cut(s)	117, 326
BspLI	GGNNCC	4 cut(s)	35, 322, 404, 585
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	4 cut(s)	161, 252, 285, 370
BspT107I	GGYRCC	2 cut(s)	402, 583
BsrBI	CCGCTC	2 cut(s)	66, 400
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	3 cut(s)	115, 307, 480
BssMI	GATC	8 cut(s)	101, 166, 244, 277, 300, 375, 410, 754
BssNI	GRCGYC	3 cut(s)	57, 74, 150
BssSI	CACGAG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	481
BstACI	GRCGYC	3 cut(s)	57, 74, 150
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstC8I	GCNNGC	2 cut(s)	384, 664
BstDEI	CTNAG	2 cut(s)	122, 348
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	267, 279
BstFNI	CGCG	2 cut(s)	117, 326
BstKTI	GATC	8 cut(s)	104, 169, 247, 280, 303, 378, 413, 757
BstMBI	GATC	8 cut(s)	101, 166, 244, 277, 300, 375, 410, 754
BstMCI	CGRYCG	2 cut(s)	104, 307
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	3 cut(s)	306, 440, 479
BstUI	CGCG	2 cut(s)	117, 326
BstV1I	GCAGC	1 cut(s)	715
BstX2I	RGATCY	2 cut(s)	375, 410
BstYI	RGATCY	2 cut(s)	375, 410
BstZI	CGGCCG	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	120, 306
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	698
BtrI	CACGTC	1 cut(s)	652
BtsCI	GGATG	2 cut(s)	267, 279
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	384, 664
Cfr42I	CCGCGG	1 cut(s)	118
CseI	GACGC	2 cut(s)	65, 82
Csp6I	GTAC	2 cut(s)	457, 540
CviAII	CATG	3 cut(s)	61, 176, 510
CviQI	GTAC	2 cut(s)	457, 540
DdeI	CTNAG	2 cut(s)	122, 348
DpnI	GATC	8 cut(s)	103, 168, 246, 279, 302, 377, 412, 756
DpnII	GATC	8 cut(s)	101, 166, 244, 277, 300, 375, 410, 754
EaeI	YGGCCR	1 cut(s)	304
EagI	CGGCCG	1 cut(s)	304
EclXI	CGGCCG	1 cut(s)	304
Eco52I	CGGCCG	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	479
FaeI	CATG	3 cut(s)	64, 179, 513
FatI	CATG	3 cut(s)	60, 175, 509
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	112, 115, 118, 324, 729
FokI	GGATG	2 cut(s)	274, 286
Fsp4HI	GCNGC	5 cut(s)	112, 115, 118, 324, 729
FspBI	CTAG	2 cut(s)	270, 639
GluI	GCNGC	5 cut(s)	112, 115, 118, 324, 729
HaeIII	GGCC	2 cut(s)	120, 306
HapII	CCGG	6 cut(s)	77, 307, 379, 406, 442, 732
HgaI	GACGC	2 cut(s)	65, 82
Hin1I	GRCGYC	3 cut(s)	57, 74, 150
Hin1II	CATG	3 cut(s)	64, 179, 513
HinfI	GANTC	3 cut(s)	12, 266, 445
HpaII	CCGG	6 cut(s)	77, 307, 379, 406, 442, 732
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	4 cut(s)	11, 125, 166, 320
Hpy188III	TCNNGA	3 cut(s)	154, 248, 422
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	5 cut(s)	11, 59, 76, 102, 143
HpyAV	CCTTC	4 cut(s)	484, 562, 600, 642
HpyCH4IV	ACGT	2 cut(s)	150, 651
HpyCH4V	TGCA	4 cut(s)	596, 629, 748, 770
HpyF3I	CTNAG	2 cut(s)	122, 348
HpySE526I	ACGT	2 cut(s)	150, 651
Hsp92I	GRCGYC	3 cut(s)	57, 74, 150
Hsp92II	CATG	3 cut(s)	64, 179, 513
KspI	CCGCGG	1 cut(s)	118
Kzo9I	GATC	8 cut(s)	101, 166, 244, 277, 300, 375, 410, 754
LmnI	GCTCC	7 cut(s)	33, 68, 295, 311, 320, 397, 574
Lsp1109I	GCAGC	1 cut(s)	715
MaeI	CTAG	2 cut(s)	270, 639
MaeII	ACGT	2 cut(s)	150, 651
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	8 cut(s)	103, 168, 246, 279, 302, 377, 412, 756
MbiI	CCGCTC	2 cut(s)	66, 400
MboI	GATC	8 cut(s)	101, 166, 244, 277, 300, 375, 410, 754
MboII	GAAGA	5 cut(s)	179, 364, 367, 382, 385
MflI	RGATCY	2 cut(s)	375, 410
MluCI	AATT	2 cut(s)	467, 516
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	6 cut(s)	131, 215, 246, 381, 489, 558
MseI	TTAA	2 cut(s)	471, 723
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	6 cut(s)	77, 307, 379, 406, 442, 732
MspR9I	CCNGG	3 cut(s)	308, 442, 481
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	2 cut(s)	117, 326
NciI	CCSGG	2 cut(s)	308, 442
NdeII	GATC	8 cut(s)	101, 166, 244, 277, 300, 375, 410, 754
NlaIII	CATG	3 cut(s)	64, 179, 513
NlaIV	GGNNCC	4 cut(s)	35, 322, 404, 585
NmuCI	GTSAC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 147
PfeI	GAWTC	2 cut(s)	12, 445
PkrI	GCNGC	5 cut(s)	113, 116, 119, 325, 730
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	4 cut(s)	35, 322, 404, 585
PsuI	RGATCY	2 cut(s)	375, 410
PvuI	CGATCG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	458, 541
RsaNI	GTAC	2 cut(s)	457, 540
RseI	CAYNNNNRTG	1 cut(s)	230
SacII	CCGCGG	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	471, 723
SatI	GCNGC	5 cut(s)	112, 115, 118, 324, 729
Sau3AI	GATC	8 cut(s)	101, 166, 244, 277, 300, 375, 410, 754
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	3 cut(s)	308, 442, 481
SetI	ASST	9 cut(s)	153, 214, 291, 316, 495, 592, 634, 640, 654
Sfr303I	CCGCGG	1 cut(s)	118
SgrBI	CCGCGG	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	2 cut(s)	467, 516
SsiI	CCGC	8 cut(s)	31, 66, 112, 115, 117, 207, 324, 400
SspI	AATATT	1 cut(s)	708
SspMI	CTAG	2 cut(s)	270, 639
StyD4I	CCNGG	3 cut(s)	306, 440, 479
TaiI	ACGT	2 cut(s)	153, 654
TaqI	TCGA	3 cut(s)	24, 100, 247
TasI	AATT	2 cut(s)	467, 516
TauI	GCSGC	4 cut(s)	114, 117, 120, 326
TfiI	GAWTC	2 cut(s)	12, 445
Tru1I	TTAA	2 cut(s)	471, 723
Tru9I	TTAA	2 cut(s)	471, 723
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	4 cut(s)	173, 326, 498, 701
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	467
XspI	CTAG	2 cut(s)	270, 639
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.