Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

28988506 .. 28990797

Gene Structure 2292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG269700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGTCTAGGATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTCGGAGCCGCGATTTTGGTTCATCACAAGGCTGAGAAGAGGAAGTATGTGTTGAAGAAGATCCGGCTTGCGAGGCAGACGGAGCGGTGCCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACTCGATACTGTGAAGGTGGAGATATGGCTGAGTTGATGAAGAAATCCAATGGGGTTTATTTTCCTGAGGAGAAACTATGCAGGTGGTTCACGCAGCTACTCTTGGCAGTTGAATACCTGCATTCAAATTATGTTCTACATCGTGATCTAAAATGTTCCAATATATTTCTTACTAAGGATCATGATGTTCGTCTTGGGGATTTTGGTCTTGCTAAAACTTTAAAGGCAGATGACTTGGCTTCTTCGGTTGTAGGAACCCCCAATTACATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTTTAGTTTGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

196

Amino Acids

22.74

Weight (kDa)

8.36

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 195	5e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	9 - 192	4e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	324
Acc36I	ACCTGC	2 cut(s)	324, 378
AccB1I	GGYRCC	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 139
AclWI	GGATC	3 cut(s)	24, 109, 438
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	4 cut(s)	109, 365, 378, 559
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	28, 53, 349
AluI	AGCT	3 cut(s)	28, 53, 349
AlwI	GGATC	3 cut(s)	24, 109, 438
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	346
ApoI	RAATTY	1 cut(s)	206
AsuC2I	CCSGG	2 cut(s)	47, 181
AxyI	CCTNAGG	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	3 cut(s)	7, 25, 160
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	47, 181
BfaI	CTAG	1 cut(s)	9
BfuAI	ACCTGC	2 cut(s)	324, 378
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	2 cut(s)	63, 347
BlsI	GCNGC	2 cut(s)	64, 348
Bme1390I	CCNGG	3 cut(s)	47, 181, 220
BmiI	GGNNCC	3 cut(s)	61, 143, 508
BmrFI	CCNGG	3 cut(s)	47, 181, 220
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpuMI	CCSGG	2 cut(s)	47, 181
BsaJI	CCNNGG	2 cut(s)	46, 219
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	46, 219
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	3 cut(s)	78, 273, 309
BseRI	GAGGAG	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	4 cut(s)	46, 118, 145, 181
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	16, 39, 114, 149, 397, 430
BspACI	CCGC	2 cut(s)	63, 139
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	3 cut(s)	79, 274, 310
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	61, 143, 508
BspMI	ACCTGC	2 cut(s)	324, 378
BspPI	GGATC	3 cut(s)	24, 109, 438
BspT107I	GGYRCC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	46, 219
BssMI	GATC	6 cut(s)	16, 39, 114, 149, 397, 430
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	123, 537
BstDEI	CTNAG	4 cut(s)	87, 282, 318, 426
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	6 cut(s)	19, 42, 117, 152, 400, 433
BstMBI	GATC	6 cut(s)	16, 39, 114, 149, 397, 430
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 243
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	45, 179, 218
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	2 cut(s)	114, 149
BstYI	RGATCY	2 cut(s)	114, 149
BstZI	CGGCCG	1 cut(s)	43
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	18
BveI	ACCTGC	2 cut(s)	324, 378
Cac8I	GCNNGC	2 cut(s)	123, 537
CciI	TCATGA	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	2 cut(s)	434, 520
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	4 cut(s)	87, 282, 318, 426
DpnI	GATC	6 cut(s)	18, 41, 116, 151, 399, 432
DpnII	GATC	6 cut(s)	16, 39, 114, 149, 397, 430
DraI	TTTAAA	1 cut(s)	474
EaeI	YGGCCR	1 cut(s)	43
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	568
Eco52I	CGGCCG	1 cut(s)	43
Eco81I	CCTNAGG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	568
FaeI	CATG	2 cut(s)	437, 523
FatI	CATG	2 cut(s)	433, 519
Fnu4HI	GCNGC	2 cut(s)	63, 347
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	63, 347
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	2 cut(s)	63, 347
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	4 cut(s)	46, 118, 145, 181
Hin1II	CATG	2 cut(s)	437, 523
HinfI	GANTC	2 cut(s)	5, 184
HpaII	CCGG	4 cut(s)	46, 118, 145, 181
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	2 cut(s)	59, 565
Hpy188III	TCNNGA	5 cut(s)	161, 317, 395, 434, 527
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	223, 260
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	246, 333, 373
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 243
HpyF3I	CTNAG	4 cut(s)	87, 282, 318, 426
Hsp92II	CATG	2 cut(s)	437, 523
Kzo9I	GATC	6 cut(s)	16, 39, 114, 149, 397, 430
LmnI	GCTCC	4 cut(s)	34, 50, 59, 136
Lsp1109I	GCAGC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	6 cut(s)	18, 41, 116, 151, 399, 432
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	6 cut(s)	16, 39, 114, 149, 397, 430
MboII	GAAGA	5 cut(s)	103, 121, 124, 304, 486
MflI	RGATCY	2 cut(s)	114, 149
MluCI	AATT	3 cut(s)	206, 379, 514
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	87, 120, 313
MseI	TTAA	2 cut(s)	210, 473
MspI	CCGG	4 cut(s)	46, 118, 145, 181
MspR9I	CCNGG	3 cut(s)	47, 181, 220
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 243
NciI	CCSGG	2 cut(s)	47, 181
NdeII	GATC	6 cut(s)	16, 39, 114, 149, 397, 430
NlaIII	CATG	2 cut(s)	437, 523
NlaIV	GGNNCC	3 cut(s)	61, 143, 508
NmuCI	GTSAC	1 cut(s)	250
NspI	RCATGY	1 cut(s)	523
PagI	TCATGA	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	324
PciI	ACATGT	1 cut(s)	519
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	64, 348
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	61, 143, 508
PsuI	RGATCY	2 cut(s)	114, 149
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	210, 473
SatI	GCNGC	2 cut(s)	63, 347
Sau3AI	GATC	6 cut(s)	16, 39, 114, 149, 397, 430
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	47, 181, 220
SetI	ASST	6 cut(s)	30, 55, 271, 338, 351, 372
Sse9I	AATT	3 cut(s)	206, 379, 514
SsiI	CCGC	2 cut(s)	63, 139
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	45, 179, 218
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	256
TasI	AATT	3 cut(s)	206, 379, 514
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	210, 473
Tru9I	TTAA	2 cut(s)	210, 473
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	2 cut(s)	65, 305
TspGWI	ACGGA	1 cut(s)	149
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	523
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.