Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003743.1

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

70323 .. 71392

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003743.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgttatgtgtaattgcaagtccccatggaatagatatcaatattgatagtgtgtcttccaaatcatttgtgtcttcgggtagttccatttcggggcctcacgagctgggtggaggtggcagcaattgctctttgcttgctcgtcctcgggctgagttgatgaagaaatccaatggggtttattttcctgaggagaaactatgcaggtggttcacgcagctactcttggcagttgaatacctccattcaaattatgttctacatcgtgatctaaaatgttccaatatatttcttactaaggatcatgatgttcgtcttggtgagttgaagatggatttggaaatggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

116

Amino Acids

12.85

Weight (kDa)

6.5

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	195
Acc36I	ACCTGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	3 cut(s)	236, 249, 328
AjuI	GAANNNNNNNTTGG	1 cut(s)	320
AluBI	AGCT	2 cut(s)	106, 220
AluI	AGCT	2 cut(s)	106, 220
AlwI	GGATC	1 cut(s)	309
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	120, 217
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	147
AxyI	CCTNAGG	1 cut(s)	189
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	2 cut(s)	48, 66
BbvI	GCAGC	2 cut(s)	132, 229
BccI	CCATC	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	195
BisI	GCNGC	2 cut(s)	121, 218
BlsI	GCNGC	2 cut(s)	122, 219
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	96
BpiI	GAAGAC	2 cut(s)	48, 66
BsaJI	CCNNGG	2 cut(s)	25, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse21I	CCTNAGG	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	25, 146
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	144, 180
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	132, 229
BseYI	CCCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	6
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	6
BsnI	GGCC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	268, 301
Bsp19I	CCATGG	1 cut(s)	25
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	145, 181
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	25, 146
BssMI	GATC	2 cut(s)	268, 301
BssSI	CACGAG	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	153, 189, 297
BstDSI	CCRYGG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	271, 304
BstMBI	GATC	2 cut(s)	268, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 126
BstV1I	GCAGC	2 cut(s)	132, 229
BstV2I	GAAGAC	2 cut(s)	48, 66
Bsu36I	CCTNAGG	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	95
CviAII	CATG	2 cut(s)	26, 305
CviJI	RGCY	4 cut(s)	97, 106, 152, 220
CviKI_1	RGCY	4 cut(s)	97, 106, 152, 220
DdeI	CTNAG	3 cut(s)	153, 189, 297
DpnI	GATC	2 cut(s)	270, 303
DpnII	GATC	2 cut(s)	268, 301
Eco130I	CCWWGG	1 cut(s)	25
Eco32I	GATATC	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	29, 308
FaiI	YATR	6 cut(s)	7, 27, 202, 255, 287, 306
FaqI	GGGAC	1 cut(s)	6
FatI	CATG	2 cut(s)	25, 304
Fnu4HI	GCNGC	2 cut(s)	121, 218
Fsp4HI	GCNGC	2 cut(s)	121, 218
GluI	GCNGC	2 cut(s)	121, 218
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	29, 308
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188III	TCNNGA	4 cut(s)	101, 188, 266, 305
Hpy8I	GTNNAC	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	17, 204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 126
HpyF3I	CTNAG	3 cut(s)	153, 189, 297
Hsp92II	CATG	2 cut(s)	29, 308
Kzo9I	GATC	2 cut(s)	268, 301
LpnPI	CCDG	3 cut(s)	92, 190, 201
Lsp1109I	GCAGC	2 cut(s)	132, 229
MalI	GATC	2 cut(s)	270, 303
MboI	GATC	2 cut(s)	268, 301
MboII	GAAGA	4 cut(s)	48, 66, 175, 340
MfeI	CAATTG	1 cut(s)	124
MluCI	AATT	3 cut(s)	12, 124, 250
MnlI	CCTC	5 cut(s)	107, 108, 156, 184, 251
MunI	CAATTG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	103, 126
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	268, 301
NlaIII	CATG	2 cut(s)	29, 308
NlaIV	GGNNCC	1 cut(s)	96
PagI	TCATGA	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	122, 219
PspFI	CCCAGC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	95
SatI	GCNGC	2 cut(s)	121, 218
Sau3AI	GATC	2 cut(s)	268, 301
Sau96I	GGNCC	1 cut(s)	95
SetI	ASST	5 cut(s)	108, 118, 209, 222, 243
Sse9I	AATT	3 cut(s)	12, 124, 250
SspI	AATATT	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	25
TasI	AATT	3 cut(s)	12, 124, 250
TseI	GCWGC	2 cut(s)	120, 217
TspDTI	ATGAA	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.