Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Forward (+)

16472524 .. 16474980

Gene Structure 2457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGTCTAGGATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTCGGAGCCGCGATTTTGGTTCATCACAAGGCTGAGAAGAAGAAGTATGTGTTGAAAAAGATCCGGCTTGCGAGGCAGACGGAGCGGTGCCGGAGATCTGCTCATCAAGAGGTGGCTCTTATTGCCCGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGTTTCAGCAGTGTCTCGATGTGGTGAGAATTTGCGAGGTTTTGAGGTTAAGACAGGGCCATTTCCCGGTGGTTTGTCTGGTTCCTGCCTTGCTGCAACTGACCTCAGAGGTGGGATATCATTGGTATTAGCTGCATTGGCTGCAGAAGGTACTACTGAGATCAGCGGTGTTGCTCATATTGTGGTTATGAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

142

Amino Acids

15.63

Weight (kDa)

9.47

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 78	2.8e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	65
AciI	CCGC	3 cut(s)	63, 139, 396
AclWI	GGATC	2 cut(s)	24, 109
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	206, 259
AfaI	GTAC	2 cut(s)	197, 382
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	28, 53, 362
AluI	AGCT	3 cut(s)	28, 53, 362
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	24, 109
AoxI	GGCC	2 cut(s)	43, 287
ApeKI	GCWGC	3 cut(s)	323, 362, 371
ApoI	RAATTY	2 cut(s)	206, 259
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	3 cut(s)	47, 181, 297
AsuHPI	GGTGA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	310, 349, 358
BccI	CCATC	2 cut(s)	7, 25
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	3 cut(s)	47, 181, 297
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	372
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	4 cut(s)	63, 324, 363, 372
BlsI	GCNGC	4 cut(s)	64, 325, 364, 373
Bme1390I	CCNGG	4 cut(s)	47, 181, 220, 297
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	61, 143, 313
BmrFI	CCNGG	4 cut(s)	47, 181, 220, 297
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpuMI	CCSGG	3 cut(s)	47, 181, 297
BsaJI	CCNNGG	2 cut(s)	46, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	46, 219
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	3 cut(s)	78, 349, 378
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	3 cut(s)	310, 349, 358
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	45, 289
BshNI	GGYRCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	5 cut(s)	46, 118, 145, 181, 297
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	45, 289
Bsp143I	GATC	5 cut(s)	16, 39, 114, 149, 390
BspACI	CCGC	3 cut(s)	63, 139, 396
BspANI	GGCC	2 cut(s)	45, 289
BspCNI	CTCAG	3 cut(s)	79, 348, 379
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	61, 143, 313
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	2 cut(s)	24, 109
BspT107I	GGYRCC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	46, 219
BssMI	GATC	5 cut(s)	16, 39, 114, 149, 390
Bst2UI	CCWGG	1 cut(s)	220
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	3 cut(s)	87, 335, 387
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	5 cut(s)	19, 42, 117, 152, 393
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	5 cut(s)	16, 39, 114, 149, 390
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 59, 127, 136, 176, 368, 371
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	4 cut(s)	45, 179, 218, 295
BstSFI	CTRYAG	1 cut(s)	372
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	310, 349, 358
BstX2I	RGATCY	2 cut(s)	114, 149
BstYI	RGATCY	2 cut(s)	114, 149
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	45, 289
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	196, 381
CviQI	GTAC	2 cut(s)	196, 381
DdeI	CTNAG	3 cut(s)	87, 335, 387
DpnI	GATC	5 cut(s)	18, 41, 116, 151, 392
DpnII	GATC	5 cut(s)	16, 39, 114, 149, 390
EaeI	YGGCCR	1 cut(s)	43
EagI	CGGCCG	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	43
Eco32I	GATATC	1 cut(s)	348
Eco52I	CGGCCG	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	348
FaiI	YATR	4 cut(s)	24, 102, 408, 419
Fnu4HI	GCNGC	4 cut(s)	63, 324, 363, 372
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	4 cut(s)	63, 324, 363, 372
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	4 cut(s)	63, 324, 363, 372
HaeIII	GGCC	2 cut(s)	45, 289
HapII	CCGG	5 cut(s)	46, 118, 145, 181, 297
HinfI	GANTC	2 cut(s)	5, 184
HpaII	CCGG	5 cut(s)	46, 118, 145, 181, 297
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	59, 338
Hpy188III	TCNNGA	2 cut(s)	161, 246
HpyAV	CCTTC	2 cut(s)	223, 371
HpyCH4V	TGCA	3 cut(s)	326, 365, 374
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 59, 127, 136, 176, 368, 371
HpyF3I	CTNAG	3 cut(s)	87, 335, 387
Kzo9I	GATC	5 cut(s)	16, 39, 114, 149, 390
LmnI	GCTCC	4 cut(s)	34, 50, 59, 136
Lsp1109I	GCAGC	3 cut(s)	310, 349, 358
MaeI	CTAG	1 cut(s)	9
MalI	GATC	5 cut(s)	18, 41, 116, 151, 392
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	5 cut(s)	16, 39, 114, 149, 390
MboII	GAAGA	2 cut(s)	103, 106
MflI	RGATCY	2 cut(s)	114, 149
MluCI	AATT	2 cut(s)	206, 259
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	6 cut(s)	120, 157, 260, 268, 332, 344
MseI	TTAA	2 cut(s)	210, 279
MspA1I	CMGCKG	1 cut(s)	396
MspI	CCGG	5 cut(s)	46, 118, 145, 181, 297
MspR9I	CCNGG	4 cut(s)	47, 181, 220, 297
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	7 cut(s)	34, 59, 127, 136, 176, 368, 371
NciI	CCSGG	3 cut(s)	47, 181, 297
NdeII	GATC	5 cut(s)	16, 39, 114, 149, 390
NlaIV	GGNNCC	3 cut(s)	61, 143, 313
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	64, 325, 364, 373
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	61, 143, 313
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	114, 149
RsaI	GTAC	2 cut(s)	197, 382
RsaNI	GTAC	2 cut(s)	196, 381
SaqAI	TTAA	2 cut(s)	210, 279
SatI	GCNGC	4 cut(s)	63, 324, 363, 372
Sau3AI	GATC	5 cut(s)	16, 39, 114, 149, 390
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	47, 181, 220, 297
SfcI	CTRYAG	1 cut(s)	372
Sse9I	AATT	2 cut(s)	206, 259
SsiI	CCGC	3 cut(s)	63, 139, 396
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	4 cut(s)	45, 179, 218, 295
TaqI	TCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	206, 259
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	210, 279
Tru9I	TTAA	2 cut(s)	210, 279
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	3 cut(s)	323, 362, 371
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	246
XapI	RAATTY	2 cut(s)	206, 259
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.