Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

13265793 .. 13267727

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGTCTAGGATGGATCGGTATAAGCCGATGGAGCGAGATCGGCACGGGAGCTTTCGGAGCGCGATTTTGGTTCATCACAAGGCCGAGAAGAAGCGAAGATCGGCTTGCGAGGCGGACGGAGCGGTGCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACCGGATACCGTGAAGGTGGAGATATGTGAGTTGTTCACAGTTGTTACAAACCTTGTTATTTGGGCTGAGTTGATGAAGAAATCCAATGGGGTTTATTTTCCCGAGGAGGTGGTTCACGCAGCTACTCTTGGCGTTGAATACCTCGCATTCAAATTATGGGATTTTGGTCTTGCTAAAACTTTAAAGGCAGATGACTTGGCTTCTGCGGTTGTAGGAACCCCCAATTACATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGCTTCAAATACGATATCTGGTCTTTAGTTTGCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

178

Amino Acids

20.26

Weight (kDa)

8.87

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	129 - 177	8e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	65
AciI	CCGC	4 cut(s)	116, 125, 130, 443
AclWI	GGATC	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	374, 388, 505
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	2 cut(s)	54, 359
AluI	AGCT	2 cut(s)	54, 359
AlwI	GGATC	1 cut(s)	24
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	368
BccI	CCATC	3 cut(s)	7, 25, 145
BciT130I	CCWGG	1 cut(s)	204
BciVI	GTATCC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BsaJI	CCNNGG	2 cut(s)	203, 339
BsaWI	WCCGGW	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	203, 339
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	165, 239
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	16, 40, 101, 134
BspACI	CCGC	4 cut(s)	116, 125, 130, 443
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	1 cut(s)	24
BsrBI	CCGCTC	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	203, 339
BssMI	GATC	4 cut(s)	16, 40, 101, 134
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	247, 277
BstC8I	GCNNGC	2 cut(s)	109, 483
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	4 cut(s)	19, 43, 104, 137
BstMBI	GATC	4 cut(s)	16, 40, 101, 134
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 43, 60, 113, 122, 161, 227
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	202
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	109, 483
CfoI	GCGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	466
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	4 cut(s)	18, 42, 103, 136
DpnII	GATC	4 cut(s)	16, 40, 101, 134
DraI	TTTAAA	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	514
Eco88I	CYCGRG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	202
EcoRV	GATATC	1 cut(s)	514
FaeI	CATG	1 cut(s)	469
FaiI	YATR	6 cut(s)	24, 224, 262, 394, 467, 498
FalI	AAGNNNNNCTT	2 cut(s)	91, 123
FatI	CATG	1 cut(s)	465
Fnu4HI	GCNGC	1 cut(s)	357
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	357
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	2 cut(s)	165, 239
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	469
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	2 cut(s)	5, 168
HpaII	CCGG	2 cut(s)	165, 239
HphI	GGTGA	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	273, 352
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	3 cut(s)	146, 338, 473
Hpy8I	GTNNAC	2 cut(s)	273, 352
HpyAV	CCTTC	2 cut(s)	207, 244
HpyCH4III	ACNGT	2 cut(s)	247, 277
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 43, 60, 113, 122, 161, 227
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	469
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	16, 40, 101, 134
LmnI	GCTCC	4 cut(s)	34, 51, 60, 122
LpnPI	CCDG	6 cut(s)	178, 189, 216, 252, 486, 502
Lsp1109I	GCAGC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	234, 280
MalI	GATC	4 cut(s)	18, 42, 103, 136
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	4 cut(s)	16, 40, 101, 134
MboII	GAAGA	3 cut(s)	103, 111, 325
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	3 cut(s)	190, 389, 460
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	4 cut(s)	106, 334, 337, 389
MseI	TTAA	2 cut(s)	194, 419
MspI	CCGG	2 cut(s)	165, 239
MspR9I	CCNGG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	7 cut(s)	34, 43, 60, 113, 122, 161, 227
NdeII	GATC	4 cut(s)	16, 40, 101, 134
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	469
PciI	ACATGT	1 cut(s)	465
PctI	GAATGC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	358
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	194, 419
SatI	GCNGC	1 cut(s)	357
Sau3AI	GATC	4 cut(s)	16, 40, 101, 134
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	204
SetI	ASST	6 cut(s)	56, 255, 291, 348, 361, 381
Sse9I	AATT	3 cut(s)	190, 389, 460
SsiI	CCGC	4 cut(s)	116, 125, 130, 443
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	247, 277
TasI	AATT	3 cut(s)	190, 389, 460
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	194, 419
Tru9I	TTAA	2 cut(s)	194, 419
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	2 cut(s)	65, 326
TspGWI	ACGGA	1 cut(s)	135
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	1 cut(s)	469
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.