Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

54486654 .. 54491543

Gene Structure 4890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTCGGAGCCGCGATTTTGGTTCATCACAAGGCTGAGAAGAAGAAGTATGTGTTGAAGAAGATCCGGCTTGCGAGGCAGACGGAGCGGTGCCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACTGGATACTGTGAAGGTGGAGATATGGCTGAGTTGATGAAGAAATCCAATGGGGTTTATTTTCCTGAGGAGAAACTATGCAGGTGGTTCACGCAGCTACTCTTGGCAGTTGAATACCTGCATTCAAATTATGTTCTACATCGTGATCTAAAATGTTCCAATATATTTCTTACTAAGGATCATGATGTTCGTCTTGGGGATTTTGGTCTTGCTAAAACTTTAAAGGCAGATGACTTGGCTTCTTCGGTTGTAGGAACCCCCAATTACATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTTTACTATTTCTTTGTTGTCTTTGGAGTACGGTTGGTGTTGCCTTGAATAATGTGATCGTTACCTCTAACAATACTTTTTTGCAGAATCATTACAAAATAAAAGCATACATCTTGGGCCCAACGAAGCTTTTGTACAATTTTCACCAGCAAAACAAAAAAAAACAAGTATTATTTGCTAAAAATCAAGAAGAGAAGGAACCATTACATGTACCTGATTGTGTAGAGAGGACACCGTGGGTTGCAGCACGGGTTCTCGAATCCTTGATCTTGATGCAATCTTTGGCATCCACTCTAGCTTCTACTCCCAAATCCATGAAAACAAACGCAAGATATCAACAAATTAGCATCGAAACAAAAGAAACAGCAACAGAAACAAAATTAACAAGTGGAACGCATAAAAATGGTTCAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

326

Amino Acids

37.22

Weight (kDa)

9.01

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 191	2.1e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 196	9.6e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	312
Acc36I	ACCTGC	2 cut(s)	312, 366
AccB1I	GGYRCC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	51, 127
AclWI	GGATC	3 cut(s)	12, 97, 426
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	4 cut(s)	185, 592, 698, 774
AflIII	ACRYGT	2 cut(s)	507, 769
AgsI	TTSAA	6 cut(s)	97, 353, 366, 547, 610, 972
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	5 cut(s)	16, 41, 337, 691, 860
AluI	AGCT	5 cut(s)	16, 41, 337, 691, 860
AlwI	GGATC	3 cut(s)	12, 97, 426
AoxI	GGCC	2 cut(s)	31, 679
ApaI	GGGCCC	1 cut(s)	683
ApeKI	GCWGC	2 cut(s)	334, 806
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	679, 680
AsuC2I	CCSGG	2 cut(s)	35, 169
AsuHPI	GGTGA	1 cut(s)	698
AxyI	CCTNAGG	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	683
BanI	GGYRCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	683
BarI	GAAGNNNNNNTAC	2 cut(s)	680, 712
BbvI	GCAGC	2 cut(s)	346, 818
BccI	CCATC	2 cut(s)	13, 148
BciT130I	CCWGG	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	35, 169
BfaI	CTAG	1 cut(s)	857
BfuAI	ACCTGC	2 cut(s)	312, 366
BfuI	GTATCC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	3 cut(s)	51, 335, 807
BlsI	GCNGC	3 cut(s)	52, 336, 808
Bme1390I	CCNGG	3 cut(s)	35, 169, 208
BmgT120I	GGNCC	2 cut(s)	679, 680
BmiI	GGNNCC	5 cut(s)	49, 131, 496, 681, 762
BmrFI	CCNGG	3 cut(s)	35, 169, 208
BmsI	GCATC	3 cut(s)	825, 857, 918
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpuMI	CCSGG	2 cut(s)	35, 169
BsaJI	CCNNGG	3 cut(s)	34, 207, 797
Bse1I	ACTGG	1 cut(s)	247
Bse21I	CCTNAGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	3 cut(s)	34, 207, 797
BseGI	GGATG	1 cut(s)	848
BseMII	CTCAG	3 cut(s)	66, 261, 297
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	683
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	346, 818
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	33, 681
BshNI	GGYRCC	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	4 cut(s)	34, 106, 133, 169
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	33, 681
Bsp120I	GGGCCC	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	683
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	8 cut(s)	4, 27, 102, 137, 385, 418, 618, 828
BspACI	CCGC	2 cut(s)	51, 127
BspANI	GGCC	2 cut(s)	33, 681
BspCNI	CTCAG	3 cut(s)	67, 262, 298
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	5 cut(s)	49, 131, 496, 681, 762
BspMI	ACCTGC	2 cut(s)	312, 366
BspPI	GGATC	3 cut(s)	12, 97, 426
BspT107I	GGYRCC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	34, 207, 797
BssMI	GATC	8 cut(s)	4, 27, 102, 137, 385, 418, 618, 828
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	251, 595, 798
Bst6I	CTCTTC	1 cut(s)	747
BstAUI	TGTACA	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	111, 525
BstDEI	CTNAG	4 cut(s)	75, 270, 306, 414
BstDSI	CCRYGG	1 cut(s)	797
BstF5I	GGATG	1 cut(s)	848
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	8 cut(s)	7, 30, 105, 140, 388, 421, 621, 831
BstMBI	GATC	8 cut(s)	4, 27, 102, 137, 385, 418, 618, 828
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 47, 115, 124, 164, 231
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	2 cut(s)	511, 773
BstSCI	CCNGG	3 cut(s)	33, 167, 206
BstSLI	GKGCMC	1 cut(s)	683
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	346, 818
BstX2I	RGATCY	2 cut(s)	102, 137
BstYI	RGATCY	2 cut(s)	102, 137
BstZI	CGGCCG	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	2 cut(s)	33, 681
BtgI	CCRYGG	1 cut(s)	797
BtsCI	GGATG	1 cut(s)	848
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	2 cut(s)	312, 366
Cac8I	GCNNGC	2 cut(s)	111, 525
CciI	TCATGA	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	679, 680
Csp6I	GTAC	4 cut(s)	184, 591, 697, 773
CviAII	CATG	4 cut(s)	422, 508, 770, 877
CviQI	GTAC	4 cut(s)	184, 591, 697, 773
DdeI	CTNAG	4 cut(s)	75, 270, 306, 414
DpnI	GATC	8 cut(s)	6, 29, 104, 139, 387, 420, 620, 830
DpnII	GATC	8 cut(s)	4, 27, 102, 137, 385, 418, 618, 828
DraI	TTTAAA	1 cut(s)	462
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	747
EclXI	CGGCCG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	683
Eco32I	GATATC	2 cut(s)	556, 896
Eco52I	CGGCCG	1 cut(s)	31
Eco81I	CCTNAGG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	206
EcoRV	GATATC	2 cut(s)	556, 896
EcoT38I	GRGCYC	1 cut(s)	683
FaeI	CATG	4 cut(s)	425, 511, 773, 880
FatI	CATG	4 cut(s)	421, 507, 769, 876
Fnu4HI	GCNGC	3 cut(s)	51, 335, 807
FokI	GGATG	1 cut(s)	835
FriOI	GRGCYC	1 cut(s)	683
Fsp4HI	GCNGC	3 cut(s)	51, 335, 807
FspBI	CTAG	1 cut(s)	857
GluI	GCNGC	3 cut(s)	51, 335, 807
HaeIII	GGCC	2 cut(s)	33, 681
HapII	CCGG	4 cut(s)	34, 106, 133, 169
Hin1II	CATG	4 cut(s)	425, 511, 773, 880
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	3 cut(s)	172, 649, 821
HpaII	CCGG	4 cut(s)	34, 106, 133, 169
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	47, 553
Hpy188III	TCNNGA	9 cut(s)	149, 305, 383, 422, 515, 749, 818, 832, 972
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	211, 248, 751
HpyCH4III	ACNGT	3 cut(s)	251, 595, 798
HpyCH4V	TGCA	6 cut(s)	234, 321, 361, 646, 806, 838
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 47, 115, 124, 164, 231
HpyF3I	CTNAG	4 cut(s)	75, 270, 306, 414
Hsp92II	CATG	4 cut(s)	425, 511, 773, 880
Kzo9I	GATC	8 cut(s)	4, 27, 102, 137, 385, 418, 618, 828
LmnI	GCTCC	4 cut(s)	22, 38, 47, 124
Lsp1109I	GCAGC	2 cut(s)	346, 818
LweI	GCATC	3 cut(s)	825, 857, 918
MaeI	CTAG	1 cut(s)	857
MaeIII	GTNAC	2 cut(s)	238, 622
MalI	GATC	8 cut(s)	6, 29, 104, 139, 387, 420, 620, 830
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	8 cut(s)	4, 27, 102, 137, 385, 418, 618, 828
MboII	GAAGA	7 cut(s)	91, 94, 109, 112, 292, 474, 764
MflI	RGATCY	2 cut(s)	102, 137
MhlI	GDGCHC	1 cut(s)	683
MluCI	AATT	7 cut(s)	194, 367, 502, 700, 903, 941, 976
MnlI	CCTC	4 cut(s)	108, 301, 637, 783
MseI	TTAA	4 cut(s)	198, 461, 944, 979
MslI	CAYNNNNRTG	1 cut(s)	963
MspI	CCGG	4 cut(s)	34, 106, 133, 169
MspR9I	CCNGG	3 cut(s)	35, 169, 208
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	6 cut(s)	22, 47, 115, 124, 164, 231
NciI	CCSGG	2 cut(s)	35, 169
NdeII	GATC	8 cut(s)	4, 27, 102, 137, 385, 418, 618, 828
NlaIII	CATG	4 cut(s)	425, 511, 773, 880
NlaIV	GGNNCC	5 cut(s)	49, 131, 496, 681, 762
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	2 cut(s)	511, 773
PagI	TCATGA	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	312
PciI	ACATGT	2 cut(s)	507, 769
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	172, 649, 821
PkrI	GCNGC	3 cut(s)	52, 336, 808
PscI	ACATGT	2 cut(s)	507, 769
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	5 cut(s)	49, 131, 496, 681, 762
PspOMI	GGGCCC	1 cut(s)	679
PspPI	GGNCC	2 cut(s)	679, 680
PsuI	RGATCY	2 cut(s)	102, 137
RsaI	GTAC	4 cut(s)	185, 592, 698, 774
RsaNI	GTAC	4 cut(s)	184, 591, 697, 773
RseI	CAYNNNNRTG	1 cut(s)	963
SaqAI	TTAA	4 cut(s)	198, 461, 944, 979
SatI	GCNGC	3 cut(s)	51, 335, 807
Sau3AI	GATC	8 cut(s)	4, 27, 102, 137, 385, 418, 618, 828
Sau96I	GGNCC	2 cut(s)	679, 680
ScrFI	CCNGG	3 cut(s)	35, 169, 208
SduI	GDGCHC	1 cut(s)	683
SfaNI	GCATC	3 cut(s)	825, 857, 918
SmiMI	CAYNNNNRTG	1 cut(s)	963
Sse9I	AATT	7 cut(s)	194, 367, 502, 700, 903, 941, 976
SsiI	CCGC	2 cut(s)	51, 127
SspMI	CTAG	1 cut(s)	857
StyD4I	CCNGG	3 cut(s)	33, 167, 206
TaaI	ACNGT	3 cut(s)	251, 595, 798
TaqI	TCGA	2 cut(s)	819, 912
TasI	AATT	7 cut(s)	194, 367, 502, 700, 903, 941, 976
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	3 cut(s)	172, 649, 821
Tru1I	TTAA	4 cut(s)	198, 461, 944, 979
Tru9I	TTAA	4 cut(s)	198, 461, 944, 979
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	334, 806
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	3 cut(s)	53, 293, 893
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	2 cut(s)	511, 773
XspI	CTAG	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.