Rh4BG160100

WD repeat-containing protein C2A9.03-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002709
Physical Location & Seq
Reverse (-)
28852029 .. 28854346
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG160100.1

Sequence Viewer

Length: 279 bp
ATGGCTTTTGAGCAGCCTCATCAGTTTGAATATATGGCGGATGAGGGTGACATGTCTGATTTCGTTGAGGACGCAGATGGGGATGCCGATGAAGAAAATCATGGTAGAGATATGGTTCTTGACGAATACGACATGCTTGGAGAGAATTACAGAGCTGTAGTTGATTCTAGAAATATCGGGGAATTTGGAAGTCCTGATTCTAAGCGTGGGGCTATCTACTCAAATAGATTTGGCATTTTTACACATGAACGTAGAAGTAACAAAGTGAGATGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

92

Amino Acids

10.61

Weight (kDa)

4.39

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 59
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 71
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmsI GCATC 2 cut(s) 73, 260
BseGI GGATG 2 cut(s) 46, 88
BseXI GCAGC 1 cut(s) 25
BspACI CCGC 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 46, 88
BstNSI RCATGY 2 cut(s) 55, 136
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 25
BtsCI GGATG 2 cut(s) 46, 88
CseI GACGC 1 cut(s) 80
CviAII CATG 4 cut(s) 52, 101, 133, 245
CviJI RGCY 4 cut(s) 5, 16, 155, 212
CviKI_1 RGCY 4 cut(s) 5, 16, 155, 212
DdeI CTNAG 1 cut(s) 201
EciI GGCGGA 1 cut(s) 53
FaeI CATG 4 cut(s) 55, 104, 136, 248
FaiI YATR 7 cut(s) 33, 35, 53, 102, 113, 134, 246
FatI CATG 4 cut(s) 51, 100, 132, 244
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 2 cut(s) 53, 95
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 1 cut(s) 168
GluI GCNGC 1 cut(s) 14
HgaI GACGC 1 cut(s) 80
Hin1II CATG 4 cut(s) 55, 104, 136, 248
HinfI GANTC 2 cut(s) 164, 197
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 3 cut(s) 119, 168, 194
HpyCH4IV ACGT 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 4 cut(s) 55, 104, 136, 248
LpnPI CCDG 1 cut(s) 207
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 73, 260
MaeI CTAG 1 cut(s) 168
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 47, 257
MboII GAAGA 1 cut(s) 104
MluCI AATT 2 cut(s) 145, 182
MnlI CCTC 3 cut(s) 27, 37, 61
NlaIII CATG 4 cut(s) 55, 104, 136, 248
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 2 cut(s) 55, 136
PciI ACATGT 1 cut(s) 51
PfeI GAWTC 2 cut(s) 164, 197
PkrI GCNGC 1 cut(s) 15
PscI ACATGT 1 cut(s) 51
SatI GCNGC 1 cut(s) 14
SetI ASST 2 cut(s) 157, 253
SfaNI GCATC 2 cut(s) 73, 260
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 2 cut(s) 145, 182
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 168
TaiI ACGT 1 cut(s) 253
TasI AATT 2 cut(s) 145, 182
TfiI GAWTC 2 cut(s) 164, 197
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 105, 261
XapI RAATTY 1 cut(s) 182
XbaI TCTAGA 1 cut(s) 167
XceI RCATGY 2 cut(s) 55, 136
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.