Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01065

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Forward (+)

8512 .. 9751

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G022940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTCGGAGCCGCGATTTTGGTTCATCACAAGGCTGAGAAGAAGAAGTATGTGTTGAAGAAGATCCGGCTTGCGAGGCAGACGGAGCGGTGCCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACTGGATACTGTGAAGGTGGAGATATAAATCCAATGGGGGTTTATTTTCCTGAGGAGAAACTATGCAGGTGGTTCACGCAGCTACTCTTGGCAGTTGAATACCTGCATTCAAATTATGTTCTACATCGTGATCTAAAATGTTCCAATATATTTCTTACTAAGGATCATGATGTTCGTCTTGGGGATTTTGGTCTTGCTAAAACTTTAAAGGCAGATGACTTGGCTTCTTCGGTATGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

160

Amino Acids

18.46

Weight (kDa)

8.44

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 159	4.6e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 153	1.1e-23	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	297
Acc36I	ACCTGC	2 cut(s)	297, 351
AccB1I	GGYRCC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	51, 127
AclWI	GGATC	3 cut(s)	12, 97, 411
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	2 cut(s)	185, 478
AgsI	TTSAA	3 cut(s)	97, 338, 351
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	16, 41, 322
AluI	AGCT	3 cut(s)	16, 41, 322
AlwI	GGATC	3 cut(s)	12, 97, 411
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	194
AsuC2I	CCSGG	2 cut(s)	35, 169
AxyI	CCTNAGG	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	13, 148
BciT130I	CCWGG	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	35, 169
BfuAI	ACCTGC	2 cut(s)	297, 351
BfuI	GTATCC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	2 cut(s)	51, 320
BlsI	GCNGC	2 cut(s)	52, 321
Bme1390I	CCNGG	3 cut(s)	35, 169, 208
BmiI	GGNNCC	2 cut(s)	49, 131
BmrFI	CCNGG	3 cut(s)	35, 169, 208
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpuMI	CCSGG	2 cut(s)	35, 169
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	34, 207
Bse1I	ACTGG	1 cut(s)	247
Bse21I	CCTNAGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	34, 207
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	66, 282
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	308
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	331
Bsh1236I	CGCG	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	4 cut(s)	34, 106, 133, 169
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	476
Bsp143I	GATC	6 cut(s)	4, 27, 102, 137, 370, 403
BspACI	CCGC	2 cut(s)	51, 127
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	67, 283
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	49, 131
BspMI	ACCTGC	2 cut(s)	297, 351
BspPI	GGATC	3 cut(s)	12, 97, 411
BspT107I	GGYRCC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	34, 207
BssMI	GATC	6 cut(s)	4, 27, 102, 137, 370, 403
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	75, 291, 399
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	6 cut(s)	7, 30, 105, 140, 373, 406
BstMBI	GATC	6 cut(s)	4, 27, 102, 137, 370, 403
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 47, 115, 124, 164, 231
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	3 cut(s)	33, 167, 206
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	102, 137
BstYI	RGATCY	2 cut(s)	102, 137
BstZI	CGGCCG	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	2 cut(s)	297, 351
Cac8I	GCNNGC	1 cut(s)	111
CciI	TCATGA	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	184, 477
CviAII	CATG	1 cut(s)	407
CviQI	GTAC	2 cut(s)	184, 477
DdeI	CTNAG	3 cut(s)	75, 291, 399
DpnI	GATC	6 cut(s)	6, 29, 104, 139, 372, 405
DpnII	GATC	6 cut(s)	4, 27, 102, 137, 370, 403
DraI	TTTAAA	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	31
Eco81I	CCTNAGG	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	206
FaeI	CATG	1 cut(s)	410
FatI	CATG	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	51, 320
Fsp4HI	GCNGC	2 cut(s)	51, 320
GluI	GCNGC	2 cut(s)	51, 320
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	4 cut(s)	34, 106, 133, 169
Hin1II	CATG	1 cut(s)	410
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	4 cut(s)	34, 106, 133, 169
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	4 cut(s)	149, 290, 368, 407
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	2 cut(s)	211, 248
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	3 cut(s)	234, 306, 346
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 47, 115, 124, 164, 231
HpyF3I	CTNAG	3 cut(s)	75, 291, 399
Hsp92II	CATG	1 cut(s)	410
Kzo9I	GATC	6 cut(s)	4, 27, 102, 137, 370, 403
LmnI	GCTCC	4 cut(s)	22, 38, 47, 124
Lsp1109I	GCAGC	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	6 cut(s)	6, 29, 104, 139, 372, 405
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	6 cut(s)	4, 27, 102, 137, 370, 403
MboII	GAAGA	5 cut(s)	91, 94, 109, 112, 459
MflI	RGATCY	2 cut(s)	102, 137
MluCI	AATT	2 cut(s)	194, 352
MnlI	CCTC	2 cut(s)	108, 286
MseI	TTAA	2 cut(s)	198, 446
MspI	CCGG	4 cut(s)	34, 106, 133, 169
MspR9I	CCNGG	3 cut(s)	35, 169, 208
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	6 cut(s)	22, 47, 115, 124, 164, 231
NciI	CCSGG	2 cut(s)	35, 169
NdeII	GATC	6 cut(s)	4, 27, 102, 137, 370, 403
NlaIII	CATG	1 cut(s)	410
NlaIV	GGNNCC	2 cut(s)	49, 131
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	52, 321
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	49, 131
PsuI	RGATCY	2 cut(s)	102, 137
RsaI	GTAC	2 cut(s)	185, 478
RsaNI	GTAC	2 cut(s)	184, 477
SaqAI	TTAA	2 cut(s)	198, 446
SatI	GCNGC	2 cut(s)	51, 320
Sau3AI	GATC	6 cut(s)	4, 27, 102, 137, 370, 403
ScrFI	CCNGG	3 cut(s)	35, 169, 208
SetI	ASST	6 cut(s)	18, 43, 259, 311, 324, 345
Sse9I	AATT	2 cut(s)	194, 352
SsiI	CCGC	2 cut(s)	51, 127
StyD4I	CCNGG	3 cut(s)	33, 167, 206
TaaI	ACNGT	1 cut(s)	251
TasI	AATT	2 cut(s)	194, 352
TatI	WGTACW	1 cut(s)	476
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	198, 446
Tru9I	TTAA	2 cut(s)	198, 446
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.