Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008241.1

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Forward (+)

100487 .. 102679

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008241.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggagtctaggatggatcagtatgagctgatggagcagatcggccggggagctttcggagccgcgattttggttcatcacaaggctgagaagaagaagtatgtgttgaagaagatccggcttgcgaggcagacggagcagtgccggagatctgctcatcaagagatggctcttattgcccggattcagcacccgtacattgtggaatttaaggaagcctgggttgagaaggagcactcatactgcgtctactccgccttcggtgactgtaccgcacgcgtctcggaagtgcgtgagcctagatccaccatcatcatcccggtgcacgagttcgagatcctctcttgcgattcaaacaagtacgacgactgcgtcatcgccaccgtcttcgtcgacaaatcgatcaaggtttggaacgtcagatccattggagctccgatttcggtgctcaatggccacagctaccccttcaaaaaagtcaaattctcgccgtaccggcaaagcttgatgatgtcgtgctcgtacgacttgtcggcgtgcttgccgttgcttcaatacaaggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

188

Amino Acids

21.74

Weight (kDa)

8.78

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	371
AccI	GTMKAC	2 cut(s)	249, 393
AccII	CGCG	2 cut(s)	65, 279
AciI	CCGC	3 cut(s)	63, 255, 273
AclWI	GGATC	5 cut(s)	24, 109, 297, 331, 417
AcoI	YGGCCR	2 cut(s)	43, 454
AcsI	RAATTY	2 cut(s)	206, 482
AfaI	GTAC	5 cut(s)	197, 271, 362, 494, 524
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	109, 354, 472, 554
AjnI	CCWGG	1 cut(s)	218
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	5 cut(s)	28, 53, 434, 462, 504
AluI	AGCT	5 cut(s)	28, 53, 434, 462, 504
Alw21I	GWGCWC	5 cut(s)	237, 327, 436, 450, 521
Alw26I	GTCTC	1 cut(s)	286
Alw44I	GTGCAC	1 cut(s)	323
AlwI	GGATC	5 cut(s)	24, 109, 297, 331, 417
AoxI	GGCC	2 cut(s)	43, 454
ApaLI	GTGCAC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	206, 482
AsuC2I	CCSGG	3 cut(s)	47, 181, 320
AsuHPI	GGTGA	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	5 cut(s)	237, 327, 436, 450, 521
BccI	CCATC	4 cut(s)	7, 25, 160, 317
BceAI	ACGGC	2 cut(s)	475, 529
BcgI	CGANNNNNNTGC	4 cut(s)	264, 298, 427, 461
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	3 cut(s)	47, 181, 320
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	3 cut(s)	9, 300, 565
BglI	GCCNNNNNGGC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	47, 181, 220, 320
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	4 cut(s)	47, 181, 220, 320
BpiI	GAAGAC	1 cut(s)	379
BplI	GAGNNNNNCTC	4 cut(s)	139, 171, 326, 358
BpuMI	CCSGG	3 cut(s)	47, 181, 320
Bsa29I	ATCGAT	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	46, 219
Bse118I	RCCGGY	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	46, 219
BseGI	GGATG	2 cut(s)	18, 315
BseMII	CTCAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	327
BseX3I	CGGCCG	1 cut(s)	43
Bsh1236I	CGCG	2 cut(s)	65, 279
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	45, 456
BshVI	ATCGAT	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	5 cut(s)	237, 327, 436, 450, 521
BsiSI	CCGG	6 cut(s)	46, 118, 145, 181, 320, 496
BsiWI	CGTACG	1 cut(s)	522
BsmAI	GTCTC	1 cut(s)	286
BsmBI	CGTCTC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	45, 456
Bsp1286I	GDGCHC	5 cut(s)	237, 327, 436, 450, 521
Bsp143I	GATC	8 cut(s)	16, 39, 114, 149, 302, 336, 402, 422
BspACI	CCGC	3 cut(s)	63, 255, 273
BspANI	GGCC	2 cut(s)	45, 456
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	1 cut(s)	401
BspFNI	CGCG	2 cut(s)	65, 279
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	5 cut(s)	24, 109, 297, 331, 417
BsrFI	RCCGGY	1 cut(s)	495
BssAI	RCCGGY	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	46, 219
BssMI	GATC	8 cut(s)	16, 39, 114, 149, 302, 336, 402, 422
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	2 cut(s)	269, 385
BstC8I	GCNNGC	4 cut(s)	123, 277, 538, 542
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	18, 315
BstFNI	CGCG	2 cut(s)	65, 279
BstKTI	GATC	8 cut(s)	19, 42, 117, 152, 305, 339, 405, 425
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	8 cut(s)	16, 39, 114, 149, 302, 336, 402, 422
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 496
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	4 cut(s)	45, 179, 218, 318
BstSLI	GKGCMC	1 cut(s)	327
BstUI	CGCG	2 cut(s)	65, 279
BstV2I	GAAGAC	1 cut(s)	379
BstX2I	RGATCY	5 cut(s)	114, 149, 302, 336, 422
BstYI	RGATCY	5 cut(s)	114, 149, 302, 336, 422
BstZI	CGGCCG	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	2 cut(s)	45, 456
BsuTUI	ATCGAT	1 cut(s)	401
BtgZI	GCGATG	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	18, 315
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	4 cut(s)	123, 277, 538, 542
Cfr10I	RCCGGY	1 cut(s)	495
ClaI	ATCGAT	1 cut(s)	401
CseI	GACGC	3 cut(s)	235, 268, 361
Csp6I	GTAC	5 cut(s)	196, 270, 361, 493, 523
CviQI	GTAC	5 cut(s)	196, 270, 361, 493, 523
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	8 cut(s)	18, 41, 116, 151, 304, 338, 404, 424
DpnII	GATC	8 cut(s)	16, 39, 114, 149, 302, 336, 402, 422
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	2 cut(s)	43, 454
EagI	CGGCCG	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	434
EclXI	CGGCCG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	436
Eco52I	CGGCCG	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	286
FaiI	YATR	3 cut(s)	24, 102, 241
FblI	GTMKAC	2 cut(s)	249, 393
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	25, 302
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	3 cut(s)	9, 300, 565
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	45, 456
HapII	CCGG	6 cut(s)	46, 118, 145, 181, 320, 496
HgaI	GACGC	3 cut(s)	235, 268, 361
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	3 cut(s)	5, 184, 350
HpaII	CCGG	6 cut(s)	46, 118, 145, 181, 320, 496
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	3 cut(s)	250, 325, 394
Hpy188I	TCNGA	4 cut(s)	59, 286, 422, 438
Hpy188III	TCNNGA	2 cut(s)	161, 334
Hpy8I	GTNNAC	3 cut(s)	250, 325, 394
Hpy99I	CGWCG	2 cut(s)	368, 395
HpyAV	CCTTC	3 cut(s)	223, 268, 478
HpyCH4III	ACNGT	2 cut(s)	269, 385
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	1 cut(s)	325
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 496
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	417
Kzo9I	GATC	8 cut(s)	16, 39, 114, 149, 302, 336, 402, 422
LmnI	GCTCC	7 cut(s)	34, 50, 59, 136, 232, 431, 439
LpnPI	CCDG	8 cut(s)	59, 131, 158, 194, 205, 232, 333, 509
MaeI	CTAG	3 cut(s)	9, 300, 565
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	8 cut(s)	18, 41, 116, 151, 304, 338, 404, 424
MboI	GATC	8 cut(s)	16, 39, 114, 149, 302, 336, 402, 422
MboII	GAAGA	5 cut(s)	103, 106, 121, 124, 379
MflI	RGATCY	5 cut(s)	114, 149, 302, 336, 422
MhlI	GDGCHC	5 cut(s)	237, 327, 436, 450, 521
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	2 cut(s)	206, 482
MluI	ACGCGT	1 cut(s)	277
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	2 cut(s)	120, 350
Mox20I	TGGCCA	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	456
MspI	CCGG	6 cut(s)	46, 118, 145, 181, 320, 496
MspR9I	CCNGG	4 cut(s)	47, 181, 220, 320
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	2 cut(s)	65, 279
MwoI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 496
NciI	CCSGG	3 cut(s)	47, 181, 320
NdeII	GATC	8 cut(s)	16, 39, 114, 149, 302, 336, 402, 422
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	184, 350
Pfl23II	CGTACG	1 cut(s)	522
PflFI	GACNNNGTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspLI	CGTACG	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	5 cut(s)	114, 149, 302, 336, 422
PsyI	GACNNNGTC	1 cut(s)	371
RsaI	GTAC	5 cut(s)	197, 271, 362, 494, 524
RsaNI	GTAC	5 cut(s)	196, 270, 361, 493, 523
RseI	CAYNNNNRTG	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	436
SalI	GTCGAC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	8 cut(s)	16, 39, 114, 149, 302, 336, 402, 422
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	47, 181, 220, 320
SduI	GDGCHC	5 cut(s)	237, 327, 436, 450, 521
SetI	ASST	7 cut(s)	30, 55, 411, 420, 436, 464, 506
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	206, 482
SsiI	CCGC	3 cut(s)	63, 255, 273
SspMI	CTAG	3 cut(s)	9, 300, 565
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	4 cut(s)	45, 179, 218, 318
TaaI	ACNGT	2 cut(s)	269, 385
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	3 cut(s)	333, 393, 401
TasI	AATT	2 cut(s)	206, 482
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	184, 350
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	371
VneI	GTGCAC	1 cut(s)	323
XapI	RAATTY	2 cut(s)	206, 482
XmiI	GTMKAC	2 cut(s)	249, 393
XspI	CTAG	3 cut(s)	9, 300, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.