Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003260.1

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

114462 .. 117967

Gene Structure 3506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003260.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgcgtcttgataaagaaggagtgagtttttgtacgcgaaccacatacgatgacaatgccatcacaaatgctgttgaaatatatgatagcctggggggtggaatgcatttcatggcatccaataatgattgtggtataagagaatatgacatggagagatttcagcttctgaatcactttcgattcccctggccagtgaatcatacatcaataagcccagatcgtagggttgttgccgtagttggagatcacgtggatggattgcttatggattctcagaatggaaagactattgctaaggttgttggtcatctagattactcctttgcttctgcatggcatcctgatggccgcatatttgccaccggaaatcaggacaagacttcccgagtttgggatataagaaatctttcatcacccattgcagttctgaagaataacttgggtgctactcggtctattcggttttcatcagatggaccagaattagagtctggtgaagtactgagaaatcaatggggcatgcctactccagcccactgccgtcgatcgcaaagccgccgcggcctcagaacccgattcgccgtcgccgatgacgtcttgagttttttcgatccacaccatgagtttcatcttcgcaaacagaaaacccccgcaggtaaaataggaggcattgctgtggttgatttggatcgagagaggaaagggatggagtctaggatggatcagtatgagctgatggagcagatcggccggggagctttgggagccgcgattttggttcatcacaaggctgagaagaagaagtatgtgttgaagaagatccggcttgcgaggcagacggagcggtgctggagatctgctcatcaagagatggctcttattgctcggattcagcacccgtacattgtggaatttaaggaactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

309

Amino Acids

35.2

Weight (kDa)

9.24

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	600
Acc36I	ACCTGC	1 cut(s)	647
AccBSI	CCGCTC	1 cut(s)	847
AccII	CGCG	3 cut(s)	37, 564, 773
AciI	CCGC	7 cut(s)	352, 559, 562, 564, 654, 771, 847
AclWI	GGATC	4 cut(s)	608, 699, 732, 817
AcoI	YGGCCR	3 cut(s)	191, 349, 751
AcsI	RAATTY	1 cut(s)	914
AcuI	CTGAAG	1 cut(s)	452
AcvI	CACGTG	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	597
AfaI	GTAC	3 cut(s)	34, 504, 905
AfiI	CCNNNNNNNGG	2 cut(s)	393, 394
AgsI	TTSAA	2 cut(s)	77, 817
AjnI	CCWGG	2 cut(s)	90, 188
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	3 cut(s)	166, 736, 761
AluI	AGCT	3 cut(s)	166, 736, 761
AlwI	GGATC	4 cut(s)	608, 699, 732, 817
AlwNI	CAGNNNCTG	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	387
AoxI	GGCC	4 cut(s)	191, 349, 565, 751
ApoI	RAATTY	1 cut(s)	914
Asp700I	GAANNNNTTC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	2 cut(s)	408, 509
AvaI	CYCGRG	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	193
BbrPI	CACGTG	1 cut(s)	253
BccI	CCATC	8 cut(s)	68, 251, 341, 470, 703, 715, 733, 868
BceAI	ACGGC	3 cut(s)	221, 528, 569
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	2 cut(s)	92, 190
BcnI	CCSGG	1 cut(s)	755
BfaI	CTAG	2 cut(s)	314, 717
BfuAI	ACCTGC	1 cut(s)	647
BglI	GCCNNNNNGGC	1 cut(s)	564
BglII	AGATCT	1 cut(s)	857
BisI	GCNGC	5 cut(s)	352, 559, 562, 565, 771
BlsI	GCNGC	5 cut(s)	353, 560, 563, 566, 772
BmcAI	AGTACT	1 cut(s)	504
Bme1390I	CCNGG	3 cut(s)	92, 190, 755
Bme18I	GGWCC	1 cut(s)	479
BmeT110I	CYCGRG	1 cut(s)	387
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	769
BmrFI	CCNGG	3 cut(s)	92, 190, 755
BmsI	GCATC	2 cut(s)	125, 349
BplI	GAGNNNNNCTC	2 cut(s)	847, 879
BpmI	CTGGAG	2 cut(s)	516, 874
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	755
BsaAI	YACGTR	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	597
BsaJI	CCNNGG	4 cut(s)	91, 188, 562, 754
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	393, 394
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	2 cut(s)	420, 672
Bse8I	GATNNNNATC	1 cut(s)	690
BseBI	CCWGG	2 cut(s)	92, 190
BseDI	CCNNGG	4 cut(s)	91, 188, 562, 754
BseGI	GGATG	5 cut(s)	116, 262, 340, 714, 726
BseJI	GATNNNNATC	1 cut(s)	690
BseLI	CCNNNNNNNGG	2 cut(s)	393, 394
BseMI	GCAATG	2 cut(s)	420, 672
BseMII	CTCAG	4 cut(s)	290, 497, 583, 786
BseNI	ACTGG	1 cut(s)	194
BseX3I	CGGCCG	1 cut(s)	751
Bsh1236I	CGCG	3 cut(s)	37, 564, 773
Bsh1285I	CGRYCG	2 cut(s)	551, 754
BshFI	GGCC	4 cut(s)	193, 351, 567, 753
BsiEI	CGRYCG	2 cut(s)	551, 754
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	3 cut(s)	366, 754, 826
BslI	CCNNNNNNNGG	2 cut(s)	393, 394
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	4 cut(s)	193, 351, 567, 753
BsoBI	CYCGRG	1 cut(s)	387
Bsp143I	GATC	9 cut(s)	220, 247, 548, 613, 691, 724, 747, 822, 857
BspACI	CCGC	7 cut(s)	352, 559, 562, 564, 654, 771, 847
BspANI	GGCC	4 cut(s)	193, 351, 567, 753
BspCNI	CTCAG	4 cut(s)	289, 498, 582, 787
BspFNI	CGCG	3 cut(s)	37, 564, 773
BspLI	GGNNCC	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	4 cut(s)	608, 699, 732, 817
BsrBI	CCGCTC	1 cut(s)	847
BsrDI	GCAATG	2 cut(s)	420, 672
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	4 cut(s)	91, 188, 562, 754
BssMI	GATC	9 cut(s)	220, 247, 548, 613, 691, 724, 747, 822, 857
BssNI	GRCGYC	1 cut(s)	597
Bst2UI	CCWGG	2 cut(s)	92, 190
BstACI	GRCGYC	1 cut(s)	597
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	524, 831
BstDEI	CTNAG	5 cut(s)	276, 297, 506, 569, 795
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	5 cut(s)	116, 262, 340, 714, 726
BstFNI	CGCG	3 cut(s)	37, 564, 773
BstKTI	GATC	9 cut(s)	223, 250, 551, 616, 694, 727, 750, 825, 860
BstMBI	GATC	9 cut(s)	220, 247, 548, 613, 691, 724, 747, 822, 857
BstMCI	CGRYCG	2 cut(s)	551, 754
BstMWI	GCNNNNNNNGC	6 cut(s)	564, 742, 767, 835, 844, 884
BstNI	CCWGG	2 cut(s)	92, 190
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	3 cut(s)	90, 188, 753
BstUI	CGCG	3 cut(s)	37, 564, 773
BstX2I	RGATCY	2 cut(s)	822, 857
BstYI	RGATCY	2 cut(s)	822, 857
BstZI	CGGCCG	1 cut(s)	751
BsuRI	GGCC	4 cut(s)	193, 351, 567, 753
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	5 cut(s)	116, 262, 340, 714, 726
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	201, 538
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	524, 831
CaiI	CAGNNNCTG	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	479
Cfr42I	CCGCGG	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	33, 503, 904
CviAII	CATG	5 cut(s)	112, 151, 336, 523, 623
CviQI	GTAC	3 cut(s)	33, 503, 904
DdeI	CTNAG	5 cut(s)	276, 297, 506, 569, 795
DpnI	GATC	9 cut(s)	222, 249, 550, 615, 693, 726, 749, 824, 859
DpnII	GATC	9 cut(s)	220, 247, 548, 613, 691, 724, 747, 822, 857
EaeI	YGGCCR	3 cut(s)	191, 349, 751
EagI	CGGCCG	1 cut(s)	751
EclXI	CGGCCG	1 cut(s)	751
Eco47I	GGWCC	1 cut(s)	479
Eco52I	CGGCCG	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	452
Eco72I	CACGTG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	90, 188
EcoT22I	ATGCAT	1 cut(s)	108
FaeI	CATG	5 cut(s)	115, 154, 339, 526, 626
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	5 cut(s)	111, 150, 335, 522, 622
FauI	CCCGC	1 cut(s)	661
Fnu4HI	GCNGC	5 cut(s)	352, 559, 562, 565, 771
FokI	GGATG	5 cut(s)	103, 269, 327, 721, 733
Fsp4HI	GCNGC	5 cut(s)	352, 559, 562, 565, 771
FspBI	CTAG	2 cut(s)	314, 717
GluI	GCNGC	5 cut(s)	352, 559, 562, 565, 771
GsuI	CTGGAG	2 cut(s)	516, 874
HaeIII	GGCC	4 cut(s)	193, 351, 567, 753
HapII	CCGG	3 cut(s)	366, 754, 826
Hin1I	GRCGYC	1 cut(s)	597
Hin1II	CATG	5 cut(s)	115, 154, 339, 526, 626
HinfI	GANTC	8 cut(s)	172, 183, 199, 272, 491, 579, 713, 892
HpaII	CCGG	3 cut(s)	366, 754, 826
HphI	GGTGA	2 cut(s)	408, 509
Hpy188I	TCNGA	6 cut(s)	171, 279, 432, 475, 572, 891
Hpy188III	TCNNGA	8 cut(s)	8, 314, 344, 374, 387, 601, 695, 869
Hpy99I	CGWCG	2 cut(s)	549, 590
HpyAV	CCTTC	1 cut(s)	11
HpyCH4IV	ACGT	2 cut(s)	252, 597
HpyCH4V	TGCA	3 cut(s)	106, 335, 425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	564, 742, 767, 835, 844, 884
HpyF3I	CTNAG	5 cut(s)	276, 297, 506, 569, 795
HpySE526I	ACGT	2 cut(s)	252, 597
Hsp92I	GRCGYC	1 cut(s)	597
Hsp92II	CATG	5 cut(s)	115, 154, 339, 526, 626
KspI	CCGCGG	1 cut(s)	565
Kzo9I	GATC	9 cut(s)	220, 247, 548, 613, 691, 724, 747, 822, 857
LmnI	GCTCC	4 cut(s)	742, 758, 767, 844
LweI	GCATC	2 cut(s)	125, 349
MaeI	CTAG	2 cut(s)	314, 717
MaeII	ACGT	2 cut(s)	252, 597
MalI	GATC	9 cut(s)	222, 249, 550, 615, 693, 726, 749, 824, 859
MbiI	CCGCTC	1 cut(s)	847
MboI	GATC	9 cut(s)	220, 247, 548, 613, 691, 724, 747, 822, 857
MboII	GAAGA	6 cut(s)	445, 626, 811, 814, 829, 832
MflI	RGATCY	2 cut(s)	822, 857
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	2 cut(s)	485, 914
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	500, 722
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	578, 662, 693, 828
Mox20I	TGGCCA	1 cut(s)	193
Mph1103I	ATGCAT	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	409
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	1 cut(s)	918
MslI	CAYNNNNRTG	3 cut(s)	255, 345, 677
Msp20I	TGGCCA	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	564
MspI	CCGG	3 cut(s)	366, 754, 826
MspR9I	CCNGG	3 cut(s)	92, 190, 755
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	2 cut(s)	92, 190
MvnI	CGCG	3 cut(s)	37, 564, 773
MwoI	GCNNNNNNNGC	6 cut(s)	564, 742, 767, 835, 844, 884
NciI	CCSGG	1 cut(s)	755
NdeII	GATC	9 cut(s)	220, 247, 548, 613, 691, 724, 747, 822, 857
NlaIII	CATG	5 cut(s)	115, 154, 339, 526, 626
NlaIV	GGNNCC	1 cut(s)	769
NsiI	ATGCAT	1 cut(s)	108
NspI	RCATGY	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	2 cut(s)	588, 594
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	6 cut(s)	172, 183, 199, 272, 579, 892
PkrI	GCNGC	5 cut(s)	353, 560, 563, 566, 772
Ple19I	CGATCG	1 cut(s)	551
PleI	GAGTC	2 cut(s)	499, 721
PmaCI	CACGTG	1 cut(s)	253
PmlI	CACGTG	1 cut(s)	253
PpsI	GAGTC	2 cut(s)	499, 721
Ppu21I	YACGTR	1 cut(s)	253
Psp6I	CCWGG	2 cut(s)	90, 188
PspCI	CACGTG	1 cut(s)	253
PspGI	CCWGG	2 cut(s)	90, 188
PspN4I	GGNNCC	1 cut(s)	769
PspPI	GGNCC	1 cut(s)	479
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	2 cut(s)	822, 857
PvuI	CGATCG	1 cut(s)	551
RsaI	GTAC	3 cut(s)	34, 504, 905
RsaNI	GTAC	3 cut(s)	33, 503, 904
RseI	CAYNNNNRTG	3 cut(s)	255, 345, 677
SacII	CCGCGG	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	5 cut(s)	352, 559, 562, 565, 771
Sau3AI	GATC	9 cut(s)	220, 247, 548, 613, 691, 724, 747, 822, 857
Sau96I	GGNCC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	504
SchI	GAGTC	2 cut(s)	500, 722
ScrFI	CCNGG	3 cut(s)	92, 190, 755
SetI	ASST	7 cut(s)	168, 255, 303, 600, 661, 738, 763
SfaNI	GCATC	2 cut(s)	125, 349
Sfr303I	CCGCGG	1 cut(s)	565
SgrBI	CCGCGG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	3 cut(s)	255, 345, 677
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	2 cut(s)	485, 914
SsiI	CCGC	7 cut(s)	352, 559, 562, 564, 654, 771, 847
SspMI	CTAG	2 cut(s)	314, 717
StyD4I	CCNGG	3 cut(s)	90, 188, 753
TaiI	ACGT	2 cut(s)	255, 600
TaqI	TCGA	4 cut(s)	181, 547, 612, 694
TaqII	GACCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	485, 914
TatI	WGTACW	1 cut(s)	502
TauI	GCSGC	5 cut(s)	354, 561, 564, 567, 773
TfiI	GAWTC	6 cut(s)	172, 183, 199, 272, 579, 892
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TscAI	CASTG	2 cut(s)	201, 545
TspDTI	ATGAA	5 cut(s)	100, 402, 459, 620, 773
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	2 cut(s)	201, 545
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	914
XbaI	TCTAGA	1 cut(s)	313
XceI	RCATGY	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	2 cut(s)	314, 717
ZraI	GACGTC	1 cut(s)	598
ZrmI	AGTACT	1 cut(s)	504
Zsp2I	ATGCAT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.