Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00748

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

14546 .. 15840

Gene Structure 1295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGTCTAGGATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTCGGAGCCGCGATTTTGGTTCATCACAAGGCTGAGAAGAAGAAGTATGTGTTGAAGAAGATCTGGCTTGCGAGGCAGACGGAGCGGTGCCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGTGAGGCACTTTTGTTCATGTGTGTATGTGGATGCGTATAAATCAGATTTGTATCTTATTGGTTTGGCTTTTAGATTTTTGGATGACATGGTTCAGGCATATGCATTAAATGGAAGAGGATTAGTTGGGGGAAGTTTCCAACTTGATTACCCTAGTGTTGGGGCAACAGAAACCCTTCTAATGGCTGCATGTATGGCTGATGGAACAACTATACTGTCCAATGTTGCCAGAGAACCAGAGGTGGTTGATCTTGCTCGATTTCTGACTAAAAGTGGGGCCTGTGTGGAAGGAGCAGGAAGCTTGACATCAAGGGAAATCTCATTTGCATGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

188

Amino Acids

21.16

Weight (kDa)

7.65

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 80	1.8e-11	Protein kinase domain
EPSP_synthase	PF00275	115 - 179	3.8e-12	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 139
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	389, 412
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	3 cut(s)	28, 53, 531
AluI	AGCT	3 cut(s)	28, 53, 531
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	2 cut(s)	43, 507
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	507
AsuC2I	CCSGG	2 cut(s)	47, 181
AsuHPI	GGTGA	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	4 cut(s)	7, 25, 160, 425
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	47, 181
BfaI	CTAG	2 cut(s)	9, 384
BglII	AGATCT	2 cut(s)	114, 149
BisI	GCNGC	2 cut(s)	63, 417
BlsI	GCNGC	2 cut(s)	64, 418
Bme1390I	CCNGG	3 cut(s)	47, 181, 220
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	3 cut(s)	61, 143, 508
BmrFI	CCNGG	3 cut(s)	47, 181, 220
BmsI	GCATC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpuMI	CCSGG	2 cut(s)	47, 181
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	46, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 412
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	46, 219
BseGI	GGATG	3 cut(s)	18, 268, 319
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	389, 412
BseMII	CTCAG	1 cut(s)	78
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	45, 509
BshNI	GGYRCC	1 cut(s)	141
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	46, 145, 181
BslI	CCNNNNNNNGG	2 cut(s)	389, 412
BsnI	GGCC	2 cut(s)	45, 509
Bsp143I	GATC	5 cut(s)	16, 39, 114, 149, 478
BspACI	CCGC	2 cut(s)	63, 139
BspANI	GGCC	2 cut(s)	45, 509
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	3 cut(s)	61, 143, 508
BspPI	GGATC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	46, 219
BssMI	GATC	5 cut(s)	16, 39, 114, 149, 478
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	18, 268, 319
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	5 cut(s)	19, 42, 117, 152, 481
BstMBI	GATC	5 cut(s)	16, 39, 114, 149, 478
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 425
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	423
BstSCI	CCNGG	3 cut(s)	45, 179, 218
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	2 cut(s)	114, 149
BstYI	RGATCY	2 cut(s)	114, 149
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	2 cut(s)	45, 509
BtsCI	GGATG	3 cut(s)	18, 268, 319
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	4 cut(s)	249, 319, 420, 558
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	5 cut(s)	18, 41, 116, 151, 480
DpnII	GATC	5 cut(s)	16, 39, 114, 149, 478
EaeI	YGGCCR	1 cut(s)	43
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
EclXI	CGGCCG	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	337
FaeI	CATG	4 cut(s)	252, 322, 423, 561
FatI	CATG	4 cut(s)	248, 318, 419, 557
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	63, 417
FokI	GGATG	3 cut(s)	25, 275, 326
Fsp4HI	GCNGC	2 cut(s)	63, 417
FspBI	CTAG	2 cut(s)	9, 384
GluI	GCNGC	2 cut(s)	63, 417
HaeIII	GGCC	2 cut(s)	45, 509
HapII	CCGG	3 cut(s)	46, 145, 181
Hin1II	CATG	4 cut(s)	252, 322, 423, 561
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	2 cut(s)	5, 184
HpaII	CCGG	3 cut(s)	46, 145, 181
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	59, 277, 495
Hpy188III	TCNNGA	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	223, 416, 512
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4V	TGCA	3 cut(s)	335, 419, 557
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 425
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	252, 322, 423, 561
Kzo9I	GATC	5 cut(s)	16, 39, 114, 149, 478
LmnI	GCTCC	5 cut(s)	34, 50, 59, 136, 521
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	9, 384
MalI	GATC	5 cut(s)	18, 41, 116, 151, 480
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	5 cut(s)	16, 39, 114, 149, 478
MboII	GAAGA	5 cut(s)	103, 106, 121, 124, 357
MflI	RGATCY	2 cut(s)	114, 149
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	4 cut(s)	120, 228, 341, 463
Mph1103I	ATGCAT	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	2 cut(s)	210, 338
MslI	CAYNNNNRTG	1 cut(s)	556
MspI	CCGG	3 cut(s)	46, 145, 181
MspR9I	CCNGG	3 cut(s)	47, 181, 220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	34, 59, 127, 136, 176, 425
NciI	CCSGG	2 cut(s)	47, 181
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	5 cut(s)	16, 39, 114, 149, 478
NlaIII	CATG	4 cut(s)	252, 322, 423, 561
NlaIV	GGNNCC	3 cut(s)	61, 143, 508
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	64, 418
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	3 cut(s)	61, 143, 508
PspPI	GGNCC	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	114, 149
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	210, 338
SatI	GCNGC	2 cut(s)	63, 417
Sau3AI	GATC	5 cut(s)	16, 39, 114, 149, 478
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	47, 181, 220
SetI	ASST	5 cut(s)	30, 55, 234, 474, 533
SfaNI	GCATC	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	556
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	2 cut(s)	63, 139
SspMI	CTAG	2 cut(s)	9, 384
StyD4I	CCNGG	3 cut(s)	45, 179, 218
TaaI	ACNGT	1 cut(s)	447
TaqI	TCGA	1 cut(s)	487
TasI	AATT	1 cut(s)	206
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	210, 338
Tru9I	TTAA	2 cut(s)	210, 338
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	65, 237
TspGWI	ACGGA	1 cut(s)	149
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	9, 384
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.