Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003511.1

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

147063 .. 150545

Gene Structure 3483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003511.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgacgatcccatcctccaagtctcccttcaaatctaacagtagccgatcactgccgcgctctccaagttcttctccgacgtcctcctcagaacctcgccatcgacgtcagagacttcgaggctccgaaacggcacagtttcagagggctgagttgatgaagaaatccaatggggtttattttcctgaggagaaactatgcaggtggttcacgcagctactcttggcagttgaatacctgcattcaaattatgttctacatcgtgatctaaaatgttccaatatatttcttactaaggatcatgatgttcgtcttggggattttggtcttgctaaaactttaaaggcatatgacttggcttcttcggaggataaactccttggaggcaggttggaccagttggggttcagatctcggagcaacgacatggtggcgttggaagagaagcaccggcagaggcgatggcgccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

157

Amino Acids

18.24

Weight (kDa)

10.27

Isoelectric Point (pI)

77.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	192
AatII	GACGTC	2 cut(s)	83, 109
Acc36I	ACCTGC	3 cut(s)	192, 246, 378
AccB1I	GGYRCC	1 cut(s)	465
AccII	CGCG	1 cut(s)	58
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	1 cut(s)	306
AcyI	GRCGYC	3 cut(s)	80, 106, 466
AgsI	TTSAA	3 cut(s)	31, 233, 246
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	27, 106
AlwI	GGATC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	214
AspLEI	GCGC	2 cut(s)	60, 468
AspS9I	GGNCC	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	394
AxyI	CCTNAGG	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	19, 108, 456
BceAI	ACGGC	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	27, 106
BfoI	RGCGCY	1 cut(s)	469
BfuAI	ACCTGC	3 cut(s)	192, 246, 378
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	2 cut(s)	56, 215
BlsI	GCNGC	2 cut(s)	57, 216
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	124, 467
BsaHI	GRCGYC	3 cut(s)	80, 106, 466
BsaJI	CCNNGG	1 cut(s)	379
Bse118I	RCCGGY	2 cut(s)	450, 468
Bse1I	ACTGG	1 cut(s)	397
Bse21I	CCTNAGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	11
BseMII	CTCAG	3 cut(s)	102, 141, 177
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	76, 203
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	451, 469
BsmAI	GTCTC	2 cut(s)	27, 106
BsmI	GAATGC	1 cut(s)	241
Bsp143I	GATC	5 cut(s)	6, 47, 265, 298, 410
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	3 cut(s)	101, 142, 178
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	124, 467
BspMI	ACCTGC	3 cut(s)	192, 246, 378
BspPI	GGATC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	465
BsrFI	RCCGGY	2 cut(s)	450, 468
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	2 cut(s)	450, 468
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	5 cut(s)	6, 47, 265, 298, 410
BssNI	GRCGYC	3 cut(s)	80, 106, 466
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	41, 138
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	3 cut(s)	80, 106, 466
BstDEI	CTNAG	4 cut(s)	88, 150, 186, 294
BstF5I	GGATG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	469
BstHHI	GCGC	2 cut(s)	60, 468
BstKTI	GATC	5 cut(s)	9, 50, 268, 301, 413
BstMAI	GTCTC	2 cut(s)	27, 106
BstMBI	GATC	5 cut(s)	6, 47, 265, 298, 410
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	410
BstYI	RGATCY	1 cut(s)	410
Bsu36I	CCTNAGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	3 cut(s)	192, 246, 378
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	2 cut(s)	60, 468
Cfr10I	RCCGGY	2 cut(s)	450, 468
Cfr13I	GGNCC	1 cut(s)	394
CviAII	CATG	2 cut(s)	302, 427
CviJI	RGCY	5 cut(s)	45, 123, 149, 217, 359
CviKI_1	RGCY	5 cut(s)	45, 123, 149, 217, 359
DdeI	CTNAG	4 cut(s)	88, 150, 186, 294
DinI	GGCGCC	1 cut(s)	467
DpnI	GATC	5 cut(s)	8, 49, 267, 300, 412
DpnII	GATC	5 cut(s)	6, 47, 265, 298, 410
DraI	TTTAAA	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	394
Eco81I	CCTNAGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	379
EgeI	GGCGCC	1 cut(s)	467
EheI	GGCGCC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	2 cut(s)	305, 430
FaiI	YATR	7 cut(s)	199, 252, 284, 303, 349, 351, 428
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	2 cut(s)	301, 426
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	56, 215
Fsp4HI	GCNGC	2 cut(s)	56, 215
GlaI	GCGC	2 cut(s)	59, 467
GluI	GCNGC	2 cut(s)	56, 215
HaeII	RGCGCY	1 cut(s)	469
HapII	CCGG	2 cut(s)	451, 469
HhaI	GCGC	2 cut(s)	60, 468
Hin1I	GRCGYC	3 cut(s)	80, 106, 466
Hin1II	CATG	2 cut(s)	305, 430
Hin6I	GCGC	2 cut(s)	58, 466
HinP1I	GCGC	2 cut(s)	58, 466
HpaII	CCGG	2 cut(s)	451, 469
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	8 cut(s)	78, 91, 111, 127, 144, 367, 410, 417
Hpy188III	TCNNGA	3 cut(s)	185, 263, 302
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	2 cut(s)	82, 108
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	2 cut(s)	41, 138
HpyCH4IV	ACGT	2 cut(s)	80, 106
HpyCH4V	TGCA	2 cut(s)	201, 241
HpyF3I	CTNAG	4 cut(s)	88, 150, 186, 294
HpySE526I	ACGT	2 cut(s)	80, 106
Hsp92I	GRCGYC	3 cut(s)	80, 106, 466
Hsp92II	CATG	2 cut(s)	305, 430
HspAI	GCGC	2 cut(s)	58, 466
KasI	GGCGCC	1 cut(s)	465
Kzo9I	GATC	5 cut(s)	6, 47, 265, 298, 410
LmnI	GCTCC	2 cut(s)	128, 417
LpnPI	CCDG	6 cut(s)	187, 198, 251, 373, 410, 464
Lsp1109I	GCAGC	1 cut(s)	226
MaeII	ACGT	2 cut(s)	80, 106
MalI	GATC	5 cut(s)	8, 49, 267, 300, 412
MboI	GATC	5 cut(s)	6, 47, 265, 298, 410
MboII	GAAGA	4 cut(s)	63, 172, 354, 452
MflI	RGATCY	1 cut(s)	410
MluCI	AATT	1 cut(s)	247
Mly113I	GGCGCC	1 cut(s)	466
MmeI	TCCRAC	3 cut(s)	101, 372, 417
MseI	TTAA	1 cut(s)	341
MspI	CCGG	2 cut(s)	451, 469
Mva1269I	GAATGC	1 cut(s)	241
MvnI	CGCG	1 cut(s)	58
NarI	GGCGCC	1 cut(s)	466
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	5 cut(s)	6, 47, 265, 298, 410
NlaIII	CATG	2 cut(s)	305, 430
NlaIV	GGNNCC	2 cut(s)	124, 467
PagI	TCATGA	1 cut(s)	301
PaqCI	CACCTGC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PctI	GAATGC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	57, 216
PluTI	GGCGCC	1 cut(s)	469
PspN4I	GGNNCC	2 cut(s)	124, 467
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	2 cut(s)	56, 215
Sau3AI	GATC	5 cut(s)	6, 47, 265, 298, 410
Sau96I	GGNCC	1 cut(s)	394
SetI	ASST	7 cut(s)	83, 97, 109, 206, 219, 240, 392
SfoI	GGCGCC	1 cut(s)	467
SgrAI	CRCCGGYG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	394
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	56
SspDI	GGCGCC	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	41, 138
TaiI	ACGT	2 cut(s)	83, 109
TaqI	TCGA	2 cut(s)	103, 118
TasI	AATT	1 cut(s)	247
TauI	GCSGC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	394
ZraI	GACGTC	2 cut(s)	81, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.