Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Forward (+)

55555651 .. 55557965

Gene Structure 2315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG357100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTCTAAAGGTCGCGTCTCCGTCAACATCAACGTCCTCCGCCGCAAGGATTTTTGGGACTGCAAGTCCTTCATCGTCCAATGGGGGTATGTGTTGAACAAGATCCGGCTTGCGAGGCAGACGGAGCGGTGCCGGAGATCTGCTCATCAAGAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACTGGATACTGTGAAGGTGGAGATATGGCTGAGTTGATGAAGAAATCCAATGGGGTTTATTTTCCCGAGGAGAAACTATGCAGGTGGTTCACGCAGCTACTCTTGGCAGTTGAATACCTGCATGAAAATTATGTTCTACATCGTGATCTAAAATGTTCCAATATTTTTCTTACTAAGGATCATGATGTTCGTCTTGGGGATTTTGGTATTGCTAAAACTTTAAAGGCAGATGACTTGGCTTCTTCGGTATGCACATCAACAAAAGCATTCTTCAAGGGCGTTGATACATGGAAAAAGGAAACTATTATGAAAAGGGAAGCCGCAAAGCGACTGGAGTCAAATGGAGCTGGTGTTGATGCAGAATACAAGCCTCTTCCAGCTGGCCTAAAAAATGACCAACAAAAGGAGCCAGAGGTAATTGCTACCTCAGAAGCTAGTATTGTCTTTTTGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

223

Amino Acids

25.58

Weight (kDa)

8.69

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	49 - 158	5.8e-26	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 152	1.2e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	288
Acc36I	ACCTGC	2 cut(s)	288, 342
AccB1I	GGYRCC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	15
AciI	CCGC	4 cut(s)	40, 43, 127, 537
AclWI	GGATC	2 cut(s)	97, 402
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	46, 619
AgsI	TTSAA	3 cut(s)	97, 329, 490
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	4 cut(s)	313, 563, 596, 650
AluI	AGCT	4 cut(s)	313, 563, 596, 650
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	2 cut(s)	97, 402
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	184
BciVI	GTATCC	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	651, 670
BfuAI	ACCTGC	2 cut(s)	288, 342
BfuI	GTATCC	1 cut(s)	215
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	3 cut(s)	43, 311, 537
BlsI	GCNGC	3 cut(s)	44, 312, 538
Bme1390I	CCNGG	1 cut(s)	184
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	131, 624
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	562
BoxI	GACNNNNGTC	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpmI	CTGGAG	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	183, 282
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 619
Bse1I	ACTGG	2 cut(s)	223, 552
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	183, 282
BseLI	CCNNNNNNNGG	2 cut(s)	46, 619
BseMII	CTCAG	2 cut(s)	237, 657
BseNI	ACTGG	2 cut(s)	223, 552
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	600
BshNI	GGYRCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	106, 133
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	46, 619
BsmAI	GTCTC	1 cut(s)	22
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	600
BsoBI	CYCGRG	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	102, 137, 361, 394
BspACI	CCGC	4 cut(s)	40, 43, 127, 537
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	2 cut(s)	238, 656
BspFNI	CGCG	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	2 cut(s)	131, 624
BspMI	ACCTGC	2 cut(s)	288, 342
BspPI	GGATC	2 cut(s)	97, 402
BspT107I	GGYRCC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	223, 552
BssECI	CCNNGG	2 cut(s)	183, 282
BssMI	GATC	4 cut(s)	102, 137, 361, 394
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	111, 598
BstDEI	CTNAG	3 cut(s)	246, 390, 643
BstFNI	CGCG	1 cut(s)	15
BstKTI	GATC	4 cut(s)	105, 140, 364, 397
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	102, 137, 361, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 124, 207
BstNI	CCWGG	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	182
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	102, 137
BstYI	RGATCY	2 cut(s)	102, 137
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	216
BveI	ACCTGC	2 cut(s)	288, 342
Cac8I	GCNNGC	2 cut(s)	111, 598
CciI	TCATGA	1 cut(s)	397
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	338, 398, 504
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	246, 390, 643
DpnI	GATC	4 cut(s)	104, 139, 363, 396
DpnII	GATC	4 cut(s)	102, 137, 361, 394
DraI	TTTAAA	1 cut(s)	438
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	594
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	3 cut(s)	341, 401, 507
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	3 cut(s)	337, 397, 503
Fnu4HI	GCNGC	3 cut(s)	43, 311, 537
Fsp4HI	GCNGC	3 cut(s)	43, 311, 537
FspBI	CTAG	2 cut(s)	651, 670
GluI	GCNGC	3 cut(s)	43, 311, 537
GsuI	CTGGAG	1 cut(s)	569
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	2 cut(s)	106, 133
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	3 cut(s)	341, 401, 507
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	2 cut(s)	106, 133
Hpy166II	GTNNAC	2 cut(s)	25, 306
Hpy188I	TCNGA	1 cut(s)	646
Hpy188III	TCNNGA	4 cut(s)	149, 281, 359, 398
Hpy8I	GTNNAC	2 cut(s)	25, 306
HpyAV	CCTTC	3 cut(s)	79, 187, 224
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	6 cut(s)	63, 210, 297, 337, 468, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 124, 207
HpyF3I	CTNAG	3 cut(s)	246, 390, 643
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	341, 401, 507
Kzo9I	GATC	4 cut(s)	102, 137, 361, 394
LmnI	GCTCC	3 cut(s)	124, 560, 622
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	2 cut(s)	651, 670
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	104, 139, 363, 396
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	4 cut(s)	102, 137, 361, 394
MboII	GAAGA	4 cut(s)	268, 450, 478, 581
MflI	RGATCY	2 cut(s)	102, 137
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	170, 343, 633
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	6 cut(s)	47, 108, 277, 597, 622, 652
MseI	TTAA	2 cut(s)	174, 437
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	2 cut(s)	106, 133
MspR9I	CCNGG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	115, 124, 207
NdeII	GATC	4 cut(s)	102, 137, 361, 394
NlaIII	CATG	3 cut(s)	341, 401, 507
NlaIV	GGNNCC	2 cut(s)	131, 624
NmuCI	GTSAC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	397
PaqCI	CACCTGC	1 cut(s)	288
PctI	GAATGC	1 cut(s)	482
PkrI	GCNGC	3 cut(s)	44, 312, 538
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PshAI	GACNNNNGTC	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	131, 624
PsuI	RGATCY	2 cut(s)	102, 137
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	174, 437
SatI	GCNGC	3 cut(s)	43, 311, 537
Sau3AI	GATC	4 cut(s)	102, 137, 361, 394
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	1 cut(s)	562
Sse9I	AATT	3 cut(s)	170, 343, 633
SsiI	CCGC	4 cut(s)	40, 43, 127, 537
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	651, 670
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	36
TasI	AATT	3 cut(s)	170, 343, 633
TauI	GCSGC	2 cut(s)	45, 539
Tru1I	TTAA	2 cut(s)	174, 437
Tru9I	TTAA	2 cut(s)	174, 437
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	4 cut(s)	61, 269, 354, 539
TspGWI	ACGGA	2 cut(s)	10, 137
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	2 cut(s)	651, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.