Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00849

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

2246 .. 8586

Gene Structure 6341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTCGGAGCCACTATTTTGGTTCATCACAAGGCTGAGAAGAAGAAGTATGTGTTGAAGAAGATCCGGCTTGCGAGGCAGACGGAGCGGTGCCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTCACTGGATACTGTGAAGGTGGAGATATAAATCCAATGGGGGTTTATTTTCCTGAGGAGAAACTATGCAGGTGGTTCACGCAGCTACTCTTGGCAGTTGAATACCTGCATTCAAATTATGTTCTACATCGTGATCTAAAATGTTCCAATATATTTCTTACTAAGGATCATGATGTTCGTCTTGGGGATTTTGGTCTTGCTAAAACTTTAAAGGCAGATGACTTGGCTTCTTCGGTTGTAGGAACCCCCAATTACATGTGTCCTGAACTGCTTGCTGATATTCCTTATGGCTTCAAATCTGATATCTGGTCTTTACTATTTCTTTGTTGTCTTTGGAGTACGGTTGGTGTTGCCTTGAATAATGTGATCGTTACCTCTAACAATACTTTTTTGCAGAATCATTACAAAATAAAAGCATACATCTTGGGCCCAACGAAGCTTTTGTGGGAAAATCAATATAGGCAGAGAGAAGGTGTAGAGAGGACACCGTGGGTTGCAGCACGCGTTCTCGAATCCTTGATCTTGATGCAATCTTTGGCATCCACTCCAGCTTCTACTCCCAAATCCATGAAAACAAACGCAAAATATCAACAAATTAGCATCGAAACAAAAGAAACAGCAACAGAAACAAAATTAACAAGTGGAACGCATAAAAATGGAAGAAGAAGCTATAGGTACAGATCGAGTCTCGAGCGCCTAATCTCAACCGCAGCTCCCGTCGTCTTCATGATTGTCGTCGGCTTCCAGTTCGTCTCTAGGTCGCTTTCCAGTCTGATATGGAGGTCCAATGGTCACTGGCGACTCGACTCCAGCCGGAGAAGGATAGGCGCAAACGACATCGACTTCGGAGACGGCAAGGGGGTCGATGGAGAGTCGGAGAGTAGCGTGGGGTGGAGAGAGAGAGAACTGATCTATAATTTTCGAGTGCATCCTAGTTCTTTAGTGCATTTTAGCAAAGGTAACAATGAAGAAGCAGTGTTATGGTTACAAGTTAGTTTCAGAATCTCTGTGTTATGGGCATCTGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

422

Amino Acids

48.14

Weight (kDa)

9.18

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 186	5.9e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 189	8.3e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	297
Acc36I	ACCTGC	2 cut(s)	297, 351
AccB1I	GGYRCC	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	741
AciI	CCGC	2 cut(s)	127, 945
AclWI	GGATC	3 cut(s)	12, 97, 411
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	194
AfaI	GTAC	3 cut(s)	185, 577, 914
AflIII	ACRYGT	2 cut(s)	492, 739
AgsI	TTSAA	5 cut(s)	97, 338, 351, 532, 595
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	7 cut(s)	16, 41, 322, 676, 788, 906, 950
AluI	AGCT	7 cut(s)	16, 41, 322, 676, 788, 906, 950
Alw26I	GTCTC	3 cut(s)	929, 994, 1080
AlwI	GGATC	3 cut(s)	12, 97, 411
Ama87I	CYCGRG	1 cut(s)	926
AoxI	GGCC	2 cut(s)	31, 664
ApaI	GGGCCC	1 cut(s)	668
ApeKI	GCWGC	3 cut(s)	319, 734, 947
ApoI	RAATTY	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	1064, 1096
AspLEI	GCGC	2 cut(s)	933, 1067
AspS9I	GGNCC	3 cut(s)	664, 665, 1020
AsuC2I	CCSGG	2 cut(s)	35, 169
AvaI	CYCGRG	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	1020
AxyI	CCTNAGG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	952
BbvI	GCAGC	3 cut(s)	331, 746, 959
BccI	CCATC	3 cut(s)	13, 148, 1097
BceAI	ACGGC	1 cut(s)	1105
BcgI	CGANNNNNNTGC	2 cut(s)	1081, 1115
BciT130I	CCWGG	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	239
BcnI	CCSGG	2 cut(s)	35, 169
BcoDI	GTCTC	3 cut(s)	929, 994, 1080
BfaI	CTAG	2 cut(s)	993, 1170
BfmI	CTRYAG	1 cut(s)	907
BfoI	RGCGCY	1 cut(s)	934
BfuAI	ACCTGC	2 cut(s)	297, 351
BfuI	GTATCC	1 cut(s)	239
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	3 cut(s)	320, 735, 948
BlsI	GCNGC	3 cut(s)	321, 736, 949
Bme1390I	CCNGG	3 cut(s)	35, 169, 208
Bme18I	GGWCC	1 cut(s)	1020
BmeT110I	CYCGRG	1 cut(s)	926
BmgT120I	GGNCC	3 cut(s)	664, 665, 1020
BmiI	GGNNCC	4 cut(s)	49, 131, 481, 666
BmrFI	CCNGG	3 cut(s)	35, 169, 208
BmsI	GCATC	5 cut(s)	753, 785, 846, 1174, 1265
BpiI	GAAGAC	1 cut(s)	952
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpmI	CTGGAG	2 cut(s)	768, 1030
BpuMI	CCSGG	2 cut(s)	35, 169
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	3 cut(s)	34, 207, 725
BsaXI	ACNNNNNCTCC	2 cut(s)	934, 964
Bse1I	ACTGG	4 cut(s)	247, 982, 1005, 1037
Bse21I	CCTNAGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	3 cut(s)	34, 207, 725
BseGI	GGATG	2 cut(s)	776, 1165
BseJI	GATNNNNATC	1 cut(s)	267
BseMII	CTCAG	2 cut(s)	66, 282
BseNI	ACTGG	4 cut(s)	247, 982, 1005, 1037
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	668
BseX3I	CGGCCG	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	331, 746, 959
Bsh1236I	CGCG	1 cut(s)	741
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	33, 666
BshNI	GGYRCC	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	34
BsiHKCI	CYCGRG	1 cut(s)	926
BsiSI	CCGG	5 cut(s)	34, 106, 133, 169, 1051
BsmAI	GTCTC	3 cut(s)	929, 994, 1080
BsmBI	CGTCTC	2 cut(s)	994, 1080
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	33, 666
BsoBI	CYCGRG	1 cut(s)	926
Bsp120I	GGGCCC	1 cut(s)	664
Bsp1286I	GDGCHC	1 cut(s)	668
BspACI	CCGC	2 cut(s)	127, 945
BspANI	GGCC	2 cut(s)	33, 666
BspCNI	CTCAG	2 cut(s)	67, 283
BspFNI	CGCG	1 cut(s)	741
BspHI	TCATGA	2 cut(s)	406, 963
BspLI	GGNNCC	4 cut(s)	49, 131, 481, 666
BspMI	ACCTGC	2 cut(s)	297, 351
BspPI	GGATC	3 cut(s)	12, 97, 411
BspT107I	GGYRCC	1 cut(s)	129
BsrBI	CCGCTC	1 cut(s)	127
BsrI	ACTGG	4 cut(s)	247, 982, 1005, 1037
BssECI	CCNNGG	3 cut(s)	34, 207, 725
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	251, 580, 726
BstAPI	GCANNNNNTGC	1 cut(s)	1262
BstC8I	GCNNGC	3 cut(s)	111, 510, 739
BstDEI	CTNAG	3 cut(s)	75, 291, 399
BstDSI	CCRYGG	1 cut(s)	725
BstF5I	GGATG	2 cut(s)	776, 1165
BstFNI	CGCG	1 cut(s)	741
BstH2I	RGCGCY	1 cut(s)	934
BstHHI	GCGC	2 cut(s)	933, 1067
BstMAI	GTCTC	3 cut(s)	929, 994, 1080
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 47, 115, 124, 164, 231, 1262
BstNI	CCWGG	1 cut(s)	208
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	3 cut(s)	33, 167, 206
BstSFI	CTRYAG	1 cut(s)	907
BstSLI	GKGCMC	1 cut(s)	668
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	3 cut(s)	331, 746, 959
BstV2I	GAAGAC	1 cut(s)	952
BstX2I	RGATCY	2 cut(s)	102, 137
BstXI	CCANNNNNNTGG	1 cut(s)	58
BstYI	RGATCY	2 cut(s)	102, 137
BstZI	CGGCCG	1 cut(s)	31
Bsu36I	CCTNAGG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	2 cut(s)	33, 666
BtgI	CCRYGG	1 cut(s)	725
BtsCI	GGATG	2 cut(s)	776, 1165
BtsI	GCAGTG	1 cut(s)	1218
BtsIMutI	CAGTG	3 cut(s)	240, 1030, 1218
BveI	ACCTGC	2 cut(s)	297, 351
Cac8I	GCNNGC	3 cut(s)	111, 510, 739
CciI	TCATGA	2 cut(s)	406, 963
CfoI	GCGC	2 cut(s)	933, 1067
Cfr13I	GGNCC	3 cut(s)	664, 665, 1020
Csp6I	GTAC	3 cut(s)	184, 576, 913
CviAII	CATG	5 cut(s)	407, 493, 805, 964, 1266
CviQI	GTAC	3 cut(s)	184, 576, 913
DdeI	CTNAG	3 cut(s)	75, 291, 399
DraI	TTTAAA	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	31
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	668
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	1020
Eco52I	CGGCCG	1 cut(s)	31
Eco81I	CCTNAGG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	926
EcoRII	CCWGG	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	668
Esp3I	CGTCTC	2 cut(s)	994, 1080
FaeI	CATG	5 cut(s)	410, 496, 808, 967, 1269
FatI	CATG	5 cut(s)	406, 492, 804, 963, 1265
Fnu4HI	GCNGC	3 cut(s)	320, 735, 948
FokI	GGATG	2 cut(s)	763, 1152
FriOI	GRGCYC	1 cut(s)	668
Fsp4HI	GCNGC	3 cut(s)	320, 735, 948
FspBI	CTAG	2 cut(s)	993, 1170
GlaI	GCGC	2 cut(s)	932, 1066
GluI	GCNGC	3 cut(s)	320, 735, 948
GsuI	CTGGAG	2 cut(s)	768, 1030
HaeII	RGCGCY	1 cut(s)	934
HaeIII	GGCC	2 cut(s)	33, 666
HapII	CCGG	5 cut(s)	34, 106, 133, 169, 1051
HhaI	GCGC	2 cut(s)	933, 1067
Hin1II	CATG	5 cut(s)	410, 496, 808, 967, 1269
Hin6I	GCGC	2 cut(s)	931, 1065
HinP1I	GCGC	2 cut(s)	931, 1065
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	8 cut(s)	172, 634, 749, 922, 1038, 1043, 1109, 1239
HpaII	CCGG	5 cut(s)	34, 106, 133, 169, 1051
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	6 cut(s)	47, 538, 1011, 1085, 1114, 1238
Hpy188III	TCNNGA	9 cut(s)	149, 290, 368, 407, 500, 746, 760, 926, 964
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	2 cut(s)	959, 977
HpyAV	CCTTC	4 cut(s)	211, 248, 701, 1050
HpyCH4III	ACNGT	3 cut(s)	251, 580, 726
HpyCH4V	TGCA	9 cut(s)	234, 306, 346, 631, 734, 766, 1165, 1183, 1265
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 47, 115, 124, 164, 231, 1262
HpyF3I	CTNAG	3 cut(s)	75, 291, 399
Hsp92II	CATG	5 cut(s)	410, 496, 808, 967, 1269
HspAI	GCGC	2 cut(s)	931, 1065
LmnI	GCTCC	5 cut(s)	22, 38, 47, 124, 955
Lsp1109I	GCAGC	3 cut(s)	331, 746, 959
LweI	GCATC	5 cut(s)	753, 785, 846, 1174, 1265
MaeI	CTAG	2 cut(s)	993, 1170
MaeIII	GTNAC	5 cut(s)	238, 607, 1028, 1196, 1221
MbiI	CCGCTC	1 cut(s)	127
MboII	GAAGA	9 cut(s)	91, 94, 109, 112, 459, 909, 912, 952, 1217
MflI	RGATCY	2 cut(s)	102, 137
MhlI	GDGCHC	1 cut(s)	668
MluCI	AATT	6 cut(s)	194, 352, 487, 831, 869, 1153
MluI	ACGCGT	1 cut(s)	739
MlyI	GAGTC	4 cut(s)	931, 1032, 1037, 1118
MmeI	TCCRAC	1 cut(s)	1092
MnlI	CCTC	5 cut(s)	108, 286, 622, 711, 1011
MseI	TTAA	3 cut(s)	198, 446, 872
MslI	CAYNNNNRTG	1 cut(s)	891
MspI	CCGG	5 cut(s)	34, 106, 133, 169, 1051
MspR9I	CCNGG	3 cut(s)	35, 169, 208
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	7 cut(s)	22, 47, 115, 124, 164, 231, 1262
NciI	CCSGG	2 cut(s)	35, 169
NlaIII	CATG	5 cut(s)	410, 496, 808, 967, 1269
NlaIV	GGNNCC	4 cut(s)	49, 131, 481, 666
NmuCI	GTSAC	2 cut(s)	238, 1028
NspI	RCATGY	1 cut(s)	496
PaeR7I	CTCGAG	1 cut(s)	926
PagI	TCATGA	2 cut(s)	406, 963
PaqCI	CACCTGC	1 cut(s)	297
PciI	ACATGT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	4 cut(s)	172, 634, 749, 1239
PkrI	GCNGC	3 cut(s)	321, 736, 949
PleI	GAGTC	4 cut(s)	930, 1032, 1037, 1117
PpsI	GAGTC	4 cut(s)	930, 1032, 1037, 1117
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	4 cut(s)	49, 131, 481, 666
PspOMI	GGGCCC	1 cut(s)	664
PspPI	GGNCC	3 cut(s)	664, 665, 1020
PsuI	RGATCY	2 cut(s)	102, 137
RsaI	GTAC	3 cut(s)	185, 577, 914
RsaNI	GTAC	3 cut(s)	184, 576, 913
RseI	CAYNNNNRTG	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	198, 446, 872
SatI	GCNGC	3 cut(s)	320, 735, 948
Sau96I	GGNCC	3 cut(s)	664, 665, 1020
SchI	GAGTC	4 cut(s)	931, 1032, 1037, 1118
ScrFI	CCNGG	3 cut(s)	35, 169, 208
SduI	GDGCHC	1 cut(s)	668
SfaNI	GCATC	5 cut(s)	753, 785, 846, 1174, 1265
SfcI	CTRYAG	1 cut(s)	907
Sfr274I	CTCGAG	1 cut(s)	926
SinI	GGWCC	1 cut(s)	1020
SlaI	CTCGAG	1 cut(s)	926
SmiMI	CAYNNNNRTG	1 cut(s)	891
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	6 cut(s)	194, 352, 487, 831, 869, 1153
SsiI	CCGC	2 cut(s)	127, 945
SspMI	CTAG	2 cut(s)	993, 1170
StyD4I	CCNGG	3 cut(s)	33, 167, 206
TaaI	ACNGT	3 cut(s)	251, 580, 726
TaqI	TCGA	8 cut(s)	747, 840, 920, 927, 1041, 1077, 1101, 1159
TasI	AATT	6 cut(s)	194, 352, 487, 831, 869, 1153
TfiI	GAWTC	4 cut(s)	172, 634, 749, 1239
Tru1I	TTAA	3 cut(s)	198, 446, 872
Tru9I	TTAA	3 cut(s)	198, 446, 872
TscAI	CASTG	3 cut(s)	247, 1037, 1218
TseFI	GTSAC	2 cut(s)	238, 1028
TseI	GCWGC	3 cut(s)	319, 734, 947
Tsp45I	GTSAC	2 cut(s)	238, 1028
TspDTI	ATGAA	4 cut(s)	53, 821, 952, 1218
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	3 cut(s)	247, 1037, 1218
VpaK11BI	GGWCC	1 cut(s)	1020
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	926
XspI	CTAG	2 cut(s)	993, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.