Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Reverse (-)

50500983 .. 50501498

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAGTCTAGGATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTCGGAGCCGCGATTTTGGTTCATCACAAGGCTGAGAAGAAGAAGTATGTGTTGAAGAAGATCCGGCTTGAGAGGCAGACGGAGCGGTGTCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGAATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGTTGAGGCACTTTTGTTCATGTGTGTATGTGGATGCGTATAAATCACTTTCTGGAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009987 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030154 GO:0030855 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0048869 GO:0055028 GO:0060429 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

96

Amino Acids

11.38

Weight (kDa)

9.4

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 78	4.1e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 139
AclWI	GGATC	2 cut(s)	24, 109
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	183, 206, 285
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	28, 53
AluI	AGCT	2 cut(s)	28, 53
AlwI	GGATC	2 cut(s)	24, 109
AoxI	GGCC	1 cut(s)	43
ApoI	RAATTY	3 cut(s)	183, 206, 285
AsuC2I	CCSGG	1 cut(s)	47
BccI	CCATC	3 cut(s)	7, 25, 160
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	47
BfaI	CTAG	1 cut(s)	9
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	47, 220
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	47, 220
BmsI	GCATC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	46, 219
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	46, 219
BseGI	GGATG	2 cut(s)	18, 268
BseMII	CTCAG	1 cut(s)	78
BseX3I	CGGCCG	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	46, 118
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	16, 39, 114, 149
BspACI	CCGC	2 cut(s)	63, 139
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	24, 109
BsrBI	CCGCTC	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	46, 219
BssMI	GATC	4 cut(s)	16, 39, 114, 149
Bst2UI	CCWGG	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	18, 268
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	4 cut(s)	19, 42, 117, 152
BstMBI	GATC	4 cut(s)	16, 39, 114, 149
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 59, 127, 136, 176
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	45, 218
BstUI	CGCG	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	114, 149
BstYI	RGATCY	2 cut(s)	114, 149
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	18, 268
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	249
CviJI	RGCY	8 cut(s)	28, 45, 53, 62, 86, 121, 170, 218
CviKI_1	RGCY	8 cut(s)	28, 45, 53, 62, 86, 121, 170, 218
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	4 cut(s)	18, 41, 116, 151
DpnII	GATC	4 cut(s)	16, 39, 114, 149
EaeI	YGGCCR	1 cut(s)	43
EagI	CGGCCG	1 cut(s)	43
EclXI	CGGCCG	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	252
FaiI	YATR	5 cut(s)	24, 102, 250, 258, 270
FatI	CATG	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	2 cut(s)	25, 275
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	2 cut(s)	46, 118
Hin1II	CATG	1 cut(s)	252
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	46, 118
Hpy188I	TCNGA	2 cut(s)	59, 147
Hpy188III	TCNNGA	2 cut(s)	161, 282
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 59, 127, 136, 176
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	16, 39, 114, 149
LmnI	GCTCC	4 cut(s)	34, 50, 59, 136
LpnPI	CCDG	5 cut(s)	59, 131, 205, 232, 267
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	9
MalI	GATC	4 cut(s)	18, 41, 116, 151
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	4 cut(s)	16, 39, 114, 149
MboII	GAAGA	4 cut(s)	103, 106, 121, 124
MflI	RGATCY	2 cut(s)	114, 149
MluCI	AATT	3 cut(s)	183, 206, 285
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	120, 228
MseI	TTAA	1 cut(s)	210
MspI	CCGG	2 cut(s)	46, 118
MspR9I	CCNGG	2 cut(s)	47, 220
MvaI	CCWGG	1 cut(s)	220
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	5 cut(s)	34, 59, 127, 136, 176
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	16, 39, 114, 149
NlaIII	CATG	1 cut(s)	252
NlaIV	GGNNCC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	114, 149
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	16, 39, 114, 149
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	47, 220
SetI	ASST	2 cut(s)	30, 55
SfaNI	GCATC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	3 cut(s)	183, 206, 285
SsiI	CCGC	2 cut(s)	63, 139
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	45, 218
TasI	AATT	3 cut(s)	183, 206, 285
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TspDTI	ATGAA	2 cut(s)	65, 237
TspGWI	ACGGA	1 cut(s)	149
XapI	RAATTY	3 cut(s)	183, 206, 285
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.