Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002709

Physical Location & Seq

Genomic Coordinates Forward (+)

13248676 .. 13256834

Gene Structure 8159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG161000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGTCTAGGATGGATCAGTATGAGCTGATGGAGCAGATCGGCCGGGGAGCTTTCGGAGCCGCGATTTTGGTTTATCACAAGGCTGAGAAGAAGAAGTATGTGTTGAAGAAGATCCGGCTTGAGAGGCAGACGGAGCGGTGCCGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGGATTCAGCACCCGTACATTGTGGAATTTAAGGAAGCCTGGGTTGAGAAGTTGAGGCACTTTTGTTCATTGGAAGGAAGAGATGATATCACTAATCTTGATGAGTTGGTCAAGGATTACAAAAGAAACAGAAGACGTGGAATGCTCGGATGGTTTAAACTGAAAGGTCTTAGTTACTCTCCAGAGATGCAGCAAAAACTCTTGCCTGTGCCCTTTTCATTTCACAATATAATGGACTGGCATTCCTTTGATTCCAAAGTTGGAGATAGGCTACACACATCAATGGATGTCAAGTCGAAACCATGCAAGAGGTTCGTGCTCTATTACCACGACATCCTTTTCAATGGCACTGATGTGGCAAATGCTACATCTGCTAGGGCAGCAAATGGGACGGGCCTCGGCAACTACCAGTTTGGTATGCTGGTTGTCTTCAATGATCCTCTGACCAAAGACCACCATCTTCTGTCTCCTGCCGTCGGAAGAGCTCAAGGCTTCTTTTTCTATGACATGAAGGACGACTACACTGCCTGGTTTGCCTACACTTTGGTGTTCAACTCGAGCGAGCACAAGGGTACACTCAATATCATGGGGGCCGATTTGATGCATGCCGAGACTAGGGATCTTTCGGTGGTCGGAGGAACGGGAGATTTCTTCATGGCTAGAGGGATTTGCACATTCAAGACTGATACTTTTCAGGGTGCCAACTATTTTCGTCTCCAAATGGACATCAAGTTGTATGAATGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009806 GO:0009807 GO:0009987 GO:0018130 GO:0018904 GO:0018958 GO:0019438 GO:0019748 GO:0030234 GO:0042349 GO:0042537 GO:0044237 GO:0044249 GO:0044281 GO:0044550 GO:0046189 GO:0046483 GO:0050790 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901360 GO:1901362 GO:1901503 GO:1901576 GO:1901598 GO:1901599 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

309

Amino Acids

35.91

Weight (kDa)

8.91

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	8 - 84	2.7e-12	Protein kinase domain
Dirigent	PF03018	162 - 304	1.1e-36	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54510 AT1G54510 AT1G54510 AT1G54510
rosa_chinensis	RchiOBHm_Chr7g0212351
rosa_multiflora	Rmu_sc0000918.1_g000039 Rmu_sc0003260.1_g000026 Rmu_sc0003511.1_g000025 Rmu_sc0003605.1_g000015 Rmu_sc0003743.1_g000016 Rmu_sc0008241.1_g000020 Rmu_sc0009929.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400290 Rroxscaffold_7G00173120
rosa_rugosa	Rorug02G0444000 Rorug02G0444100
rosa_samantha	Rh1AG276500 Rh1CG264200 Rh2AG236200 Rh2AG277600 Rh2BG442800 Rh2DG243500 Rh2DG434100 Rh2DG453100 Rh4BG160100 Rh4DG156000 Rh5AG238700 Rh5AG296400 Rh5AG296500 Rh5CG269700 Rh6DG357100 Rh7AG428700 Rh7CG161000 Rh7CG447600
rosa_wichuraiana	Rw0G015970 Rw0G018910 Rw0G022940 Rw1G027130 Rw5G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	141, 878
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	63, 139
AclWI	GGATC	4 cut(s)	24, 109, 611, 807
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	2 cut(s)	197, 754
AfiI	CCNNNNNNNGG	2 cut(s)	656, 795
AgsI	TTSAA	5 cut(s)	109, 523, 613, 733, 859
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	2 cut(s)	218, 707
AleI	CACNNNNGTG	2 cut(s)	533, 725
AluBI	AGCT	3 cut(s)	28, 53, 665
AluI	AGCT	3 cut(s)	28, 53, 665
Alw21I	GWGCWC	3 cut(s)	501, 667, 747
Alw26I	GTCTC	3 cut(s)	651, 785, 899
AlwI	GGATC	4 cut(s)	24, 109, 611, 807
Ama87I	CYCGRG	1 cut(s)	736
AoxI	GGCC	3 cut(s)	43, 574, 771
ApeKI	GCWGC	2 cut(s)	370, 560
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	574, 771
AsuC2I	CCSGG	2 cut(s)	47, 181
AvaI	CYCGRG	1 cut(s)	736
BaeGI	GKGCMC	1 cut(s)	393
BanI	GGYRCC	2 cut(s)	141, 878
BanII	GRGCYC	1 cut(s)	667
BarI	GAAGNNNNNNTAC	2 cut(s)	683, 715
BbsI	GAAGAC	2 cut(s)	319, 601
Bbv12I	GWGCWC	3 cut(s)	501, 667, 747
BbvI	GCAGC	2 cut(s)	382, 572
BccI	CCATC	5 cut(s)	7, 25, 160, 324, 645
BceAI	ACGGC	1 cut(s)	638
BcgI	CGANNNNNNTGC	4 cut(s)	475, 509, 686, 720
BciT130I	CCWGG	2 cut(s)	220, 709
BcnI	CCSGG	2 cut(s)	47, 181
BcoDI	GTCTC	3 cut(s)	651, 785, 899
BfaI	CTAG	4 cut(s)	9, 555, 795, 840
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	3 cut(s)	63, 371, 561
BlsI	GCNGC	3 cut(s)	64, 372, 562
Bme1390I	CCNGG	4 cut(s)	47, 181, 220, 709
BmeT110I	CYCGRG	1 cut(s)	736
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	574, 771
BmiI	GGNNCC	4 cut(s)	61, 143, 772, 880
BmrFI	CCNGG	4 cut(s)	47, 181, 220, 709
BmsI	GCATC	2 cut(s)	357, 771
BpiI	GAAGAC	2 cut(s)	319, 601
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	345
BpuEI	CTTGAG	2 cut(s)	143, 651
BpuMI	CCSGG	2 cut(s)	47, 181
BsaJI	CCNNGG	3 cut(s)	46, 219, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 795
Bse1I	ACTGG	2 cut(s)	422, 589
BseBI	CCWGG	2 cut(s)	220, 709
BseDI	CCNNGG	3 cut(s)	46, 219, 577
BseGI	GGATG	4 cut(s)	18, 335, 472, 513
BseLI	CCNNNNNNNGG	2 cut(s)	656, 795
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	422, 589
BseSI	GKGCMC	1 cut(s)	393
BseX3I	CGGCCG	1 cut(s)	43
BseXI	GCAGC	2 cut(s)	382, 572
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	3 cut(s)	45, 576, 773
BshNI	GGYRCC	2 cut(s)	141, 878
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	3 cut(s)	501, 667, 747
BsiHKCI	CYCGRG	1 cut(s)	736
BsiSI	CCGG	4 cut(s)	46, 118, 145, 181
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	656, 795
BsmAI	GTCTC	3 cut(s)	651, 785, 899
BsmBI	CGTCTC	1 cut(s)	899
BsmFI	GGGAC	1 cut(s)	583
BsmI	GAATGC	2 cut(s)	327, 421
BsnI	GGCC	3 cut(s)	45, 576, 773
BsoBI	CYCGRG	1 cut(s)	736
Bsp1286I	GDGCHC	4 cut(s)	393, 501, 667, 747
Bsp143I	GATC	6 cut(s)	16, 39, 114, 149, 616, 799
BspACI	CCGC	2 cut(s)	63, 139
BspANI	GGCC	3 cut(s)	45, 576, 773
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	4 cut(s)	61, 143, 772, 880
BspPI	GGATC	4 cut(s)	24, 109, 611, 807
BspQI	GCTCTTC	1 cut(s)	655
BspT107I	GGYRCC	2 cut(s)	141, 878
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	422, 589
BssECI	CCNNGG	3 cut(s)	46, 219, 577
BssMI	GATC	6 cut(s)	16, 39, 114, 149, 616, 799
Bst2UI	CCWGG	2 cut(s)	220, 709
Bst6I	CTCTTC	2 cut(s)	253, 655
BstC8I	GCNNGC	2 cut(s)	743, 786
BstDEI	CTNAG	2 cut(s)	87, 350
BstF5I	GGATG	4 cut(s)	18, 335, 472, 513
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	6 cut(s)	19, 42, 117, 152, 619, 802
BstMAI	GTCTC	3 cut(s)	651, 785, 899
BstMBI	GATC	6 cut(s)	16, 39, 114, 149, 616, 799
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	8 cut(s)	34, 59, 127, 136, 176, 551, 560, 713
BstNI	CCWGG	2 cut(s)	220, 709
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	4 cut(s)	45, 179, 218, 707
BstSLI	GKGCMC	1 cut(s)	393
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	382, 572
BstV2I	GAAGAC	2 cut(s)	319, 601
BstX2I	RGATCY	3 cut(s)	114, 149, 799
BstYI	RGATCY	3 cut(s)	114, 149, 799
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	45, 576, 773
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	4 cut(s)	18, 335, 472, 513
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	528, 702
Cac8I	GCNNGC	2 cut(s)	743, 786
Cfr13I	GGNCC	2 cut(s)	574, 771
Csp6I	GTAC	2 cut(s)	196, 753
CviAII	CATG	5 cut(s)	483, 688, 766, 785, 835
CviQI	GTAC	2 cut(s)	196, 753
DdeI	CTNAG	2 cut(s)	87, 350
DpnI	GATC	6 cut(s)	18, 41, 116, 151, 618, 801
DpnII	GATC	6 cut(s)	16, 39, 114, 149, 616, 799
DraI	TTTAAA	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	43
EagI	CGGCCG	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	253, 655
EarI	CTCTTC	2 cut(s)	253, 655
Ecl136II	GAGCTC	1 cut(s)	665
EclXI	CGGCCG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	667
Eco32I	GATATC	1 cut(s)	268
Eco52I	CGGCCG	1 cut(s)	43
Eco53kI	GAGCTC	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	736
EcoICRI	GAGCTC	1 cut(s)	665
EcoRII	CCWGG	2 cut(s)	218, 707
EcoRV	GATATC	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	786
EcoT38I	GRGCYC	1 cut(s)	667
Esp3I	CGTCTC	1 cut(s)	899
FaeI	CATG	5 cut(s)	486, 691, 769, 788, 838
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	5 cut(s)	482, 687, 765, 784, 834
Fnu4HI	GCNGC	3 cut(s)	63, 371, 561
FokI	GGATG	4 cut(s)	25, 342, 479, 500
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	3 cut(s)	63, 371, 561
FspBI	CTAG	4 cut(s)	9, 555, 795, 840
GluI	GCNGC	3 cut(s)	63, 371, 561
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	3 cut(s)	45, 576, 773
HapII	CCGG	4 cut(s)	46, 118, 145, 181
Hin1II	CATG	5 cut(s)	486, 691, 769, 788, 838
HinfI	GANTC	3 cut(s)	5, 184, 431
HpaII	CCGG	4 cut(s)	46, 118, 145, 181
Hpy166II	GTNNAC	1 cut(s)	755
Hpy188I	TCNGA	5 cut(s)	59, 329, 624, 659, 815
Hpy188III	TCNNGA	4 cut(s)	161, 278, 362, 859
Hpy8I	GTNNAC	1 cut(s)	755
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	2 cut(s)	248, 685
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	4 cut(s)	370, 486, 784, 852
HpyF10VI	GCNNNNNNNGC	8 cut(s)	34, 59, 127, 136, 176, 551, 560, 713
HpyF3I	CTNAG	2 cut(s)	87, 350
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	486, 691, 769, 788, 838
Kzo9I	GATC	6 cut(s)	16, 39, 114, 149, 616, 799
LguI	GCTCTTC	1 cut(s)	655
LmnI	GCTCC	4 cut(s)	34, 50, 59, 136
Lsp1109I	GCAGC	2 cut(s)	382, 572
LweI	GCATC	2 cut(s)	357, 771
MaeI	CTAG	4 cut(s)	9, 555, 795, 840
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	6 cut(s)	18, 41, 116, 151, 618, 801
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	6 cut(s)	16, 39, 114, 149, 616, 799
MflI	RGATCY	3 cut(s)	114, 149, 799
MhlI	GDGCHC	4 cut(s)	393, 501, 667, 747
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	3 cut(s)	421, 637, 793
MnlI	CCTC	7 cut(s)	120, 228, 483, 587, 630, 809, 836
Mph1103I	ATGCAT	1 cut(s)	786
MseI	TTAA	3 cut(s)	210, 336, 928
MslI	CAYNNNNRTG	3 cut(s)	461, 533, 725
MspI	CCGG	4 cut(s)	46, 118, 145, 181
MspR9I	CCNGG	4 cut(s)	47, 181, 220, 709
MssI	GTTTAAAC	1 cut(s)	337
Mva1269I	GAATGC	2 cut(s)	327, 421
MvaI	CCWGG	2 cut(s)	220, 709
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	8 cut(s)	34, 59, 127, 136, 176, 551, 560, 713
NciI	CCSGG	2 cut(s)	47, 181
NdeII	GATC	6 cut(s)	16, 39, 114, 149, 616, 799
NlaIII	CATG	5 cut(s)	486, 691, 769, 788, 838
NlaIV	GGNNCC	4 cut(s)	61, 143, 772, 880
NmeAIII	GCCGAG	2 cut(s)	558, 814
NsiI	ATGCAT	1 cut(s)	786
NspI	RCATGY	1 cut(s)	788
OliI	CACNNNNGTG	2 cut(s)	533, 725
PaeI	GCATGC	1 cut(s)	788
PaeR7I	CTCGAG	1 cut(s)	736
PciSI	GCTCTTC	1 cut(s)	655
PctI	GAATGC	2 cut(s)	327, 421
PfeI	GAWTC	2 cut(s)	184, 431
PkrI	GCNGC	3 cut(s)	64, 372, 562
PleI	GAGTC	1 cut(s)	13
PmeI	GTTTAAAC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	667
Psp6I	CCWGG	2 cut(s)	218, 707
PspGI	CCWGG	2 cut(s)	218, 707
PspN4I	GGNNCC	4 cut(s)	61, 143, 772, 880
PspPI	GGNCC	2 cut(s)	574, 771
PspXI	VCTCGAGB	1 cut(s)	736
PsuI	RGATCY	3 cut(s)	114, 149, 799
RsaI	GTAC	2 cut(s)	197, 754
RsaNI	GTAC	2 cut(s)	196, 753
RseI	CAYNNNNRTG	3 cut(s)	461, 533, 725
SacI	GAGCTC	1 cut(s)	667
SapI	GCTCTTC	1 cut(s)	655
SaqAI	TTAA	3 cut(s)	210, 336, 928
SatI	GCNGC	3 cut(s)	63, 371, 561
Sau3AI	GATC	6 cut(s)	16, 39, 114, 149, 616, 799
Sau96I	GGNCC	2 cut(s)	574, 771
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	4 cut(s)	47, 181, 220, 709
SduI	GDGCHC	4 cut(s)	393, 501, 667, 747
SetI	ASST	6 cut(s)	30, 55, 319, 349, 494, 667
SfaNI	GCATC	2 cut(s)	357, 771
Sfr274I	CTCGAG	1 cut(s)	736
SlaI	CTCGAG	1 cut(s)	736
SmiMI	CAYNNNNRTG	3 cut(s)	461, 533, 725
SmlI	CTYRAG	3 cut(s)	122, 666, 736
SmoI	CTYRAG	3 cut(s)	122, 666, 736
SphI	GCATGC	1 cut(s)	788
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	2 cut(s)	63, 139
SspMI	CTAG	4 cut(s)	9, 555, 795, 840
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	4 cut(s)	45, 179, 218, 707
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	476, 737
TasI	AATT	1 cut(s)	206
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	184, 431
Tru1I	TTAA	3 cut(s)	210, 336, 928
Tru9I	TTAA	3 cut(s)	210, 336, 928
TscAI	CASTG	2 cut(s)	535, 709
TseI	GCWGC	2 cut(s)	370, 560
TspDTI	ATGAA	4 cut(s)	237, 387, 704, 823
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	2 cut(s)	535, 709
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	788
XhoI	CTCGAG	1 cut(s)	736
XspI	CTAG	4 cut(s)	9, 555, 795, 840
Zsp2I	ATGCAT	1 cut(s)	786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.