Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0003009

Physical Location & Seq

Genomic Coordinates Reverse (-)

64830 .. 65889

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggctgaggacgaacagatcgtcgccaccaccgagaccgtcgcccccccgccggccgacgacaagcctgaggccaagtccggcaaggccaccaaggccaaggagcccaaggccaagaagcccgctgctcccaagaaggccaggactgctcccactcatcctccttatgaagagatgatcaaggatgcgattgtgactcttaaggagaggactggttcgagccagtatgcgatcactaagttcatcgaggagaagcacaagcagctccctccaaacttcaagaagcttctgctctaccatttgaagaagctcgtcagctccgacaagctcgccaaggtcaaaagctcctataagattccgtcggttcggtccgccgcagctccacctaagcccgctgctgctccggccaagaagaagcctgccgccgcggccaagcccaaggccaaggctgctgcgaagccaaagggaaagactaagtcggtcaaggcggcgagcaagtctccggccaaggctaaggccgctgctgctaagccgaagccgaagcccaaagccaagcctgcggccaaggcaaagcctgctccggccaagaccaaggcggctgctccggccaaggccaaggctgctccggctaaggcaaaggctgctccggccaagaccaaggctgccccggctgccaagcctaaggcagcagctcccaagcccaagcttaaggagaagccagccaaggctgcgaggacgttgaccaggtcatcgcctgggaggaaggctccgacggctaggtcggccaagccagcgccgaagaaggcagcgacaccgaagaaggcacccacccgtactgtgaagccgagaagcgtcaagtcgccggctaagaaagcaccagctaggaagggaaggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005739 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

299

Amino Acids

31.04

Weight (kDa)

10.79

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	53 - 114	1.2e-18	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30620 AT2G30620
fragaria_vesca	FvH4_2g02381 FvH4_2g22280 FvH4_6g02630 FvH4_7g09410
malus_domestica	MD01G1078700.v1.1 MD04G1226600.v1.1 MD05G1204100.v1.1 MD10G1191200.v1.1 MD12G1243700.v1.1
prunus_persica	Prupe.6G345300_v2.0.a1 Prupe.8G230400_v2.0.a1
pyrus_communis	pycom04g19980 pycom05g19050 pycom10g16480 pycom12g22270
rosa_chinensis	RchiOBHm_Chr3g0450571 RchiOBHm_Chr6g0289241
rosa_laevigata	RLG00000012318 RLG00000025721
rosa_multiflora	Rmu_co8346219.1_g000001 Rmu_sc0000078.1_g000047 Rmu_sc0001527.1_g000013 Rmu_sc0005951.1_g000008
rosa_roxburghii	Rroxscaffold_6G00428260 Rroxscaffold_7G00179420
rosa_rugosa	Rorug02G0628700 Rorug06G0202300
rosa_samantha	Rh3AG029400 Rh3BG029800 Rh3CG028700 Rh3DG029500 Rh6BG320600 Rh6CG326700 Rh6DG312600
rosa_wichuraiana	Rw3G002260 Rw6G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	823
AccII	CGCG	1 cut(s)	428
AcoI	YGGCCR	9 cut(s)	54, 405, 429, 504, 561, 582, 606, 648, 783
AfaI	GTAC	1 cut(s)	835
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflII	CTTAAG	2 cut(s)	200, 707
AgsI	TTSAA	2 cut(s)	280, 304
AjnI	CCWGG	3 cut(s)	140, 743, 754
Alw26I	GTCTC	2 cut(s)	29, 504
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	796
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	668
AvaII	GGWCC	1 cut(s)	369
AxyI	CCTNAGG	2 cut(s)	69, 681
BanI	GGYRCC	1 cut(s)	823
BanII	GRGCYC	1 cut(s)	108
BbvCI	CCTCAGC	1 cut(s)	6
BceAI	ACGGC	1 cut(s)	789
BciT130I	CCWGG	3 cut(s)	142, 745, 756
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	2 cut(s)	29, 504
BfaI	CTAG	2 cut(s)	777, 882
BfoI	RGCGCY	1 cut(s)	797
BfrI	CTTAAG	2 cut(s)	200, 707
BglI	GCCNNNNNGGC	2 cut(s)	95, 428
BlpI	GCTNAGC	1 cut(s)	528
Bme1390I	CCNGG	4 cut(s)	142, 668, 745, 756
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	105, 768, 825
BmrFI	CCNGG	4 cut(s)	142, 668, 745, 756
BmsI	GCATC	1 cut(s)	175
BplI	GAGNNNNNCTC	4 cut(s)	484, 516, 751, 783
Bpu10I	CCTNAGC	4 cut(s)	6, 387, 513, 630
Bpu1102I	GCTNAGC	1 cut(s)	528
BpuMI	CCSGG	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse118I	RCCGGY	2 cut(s)	52, 862
Bse1I	ACTGG	2 cut(s)	217, 223
Bse21I	CCTNAGG	2 cut(s)	69, 681
BseBI	CCWGG	3 cut(s)	142, 745, 756
BseGI	GGATG	2 cut(s)	157, 190
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	217, 223
BseRI	GAGGAG	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	823
BsiEI	CGRYCG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	29, 504
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	18, 177, 231
Bsp1720I	GCTNAGC	1 cut(s)	528
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	3 cut(s)	105, 768, 825
BspT107I	GGYRCC	1 cut(s)	823
BspTI	CTTAAG	2 cut(s)	200, 707
BspTNI	GGTCTC	1 cut(s)	29
BsrFI	RCCGGY	2 cut(s)	52, 862
BsrI	ACTGG	2 cut(s)	217, 223
BssAI	RCCGGY	2 cut(s)	52, 862
BssMI	GATC	3 cut(s)	18, 177, 231
Bst2UI	CCWGG	3 cut(s)	142, 745, 756
Bst4CI	ACNGT	2 cut(s)	40, 838
Bst6I	CTCTTC	1 cut(s)	165
BstAFI	CTTAAG	2 cut(s)	200, 707
BstAPI	GCANNNNNTGC	2 cut(s)	575, 641
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	157, 190
BstFNI	CGCG	1 cut(s)	428
BstH2I	RGCGCY	1 cut(s)	797
BstHHI	GCGC	1 cut(s)	796
BstKTI	GATC	3 cut(s)	21, 180, 234
BstMAI	GTCTC	2 cut(s)	29, 504
BstMBI	GATC	3 cut(s)	18, 177, 231
BstMCI	CGRYCG	1 cut(s)	57
BstNI	CCWGG	3 cut(s)	142, 745, 756
BstSCI	CCNGG	4 cut(s)	140, 666, 743, 754
BstUI	CGCG	1 cut(s)	428
BstZI	CGGCCG	1 cut(s)	54
Bsu36I	CCTNAGG	2 cut(s)	69, 681
BtgI	CCRYGG	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	735
BtsCI	GGATG	2 cut(s)	157, 190
CfoI	GCGC	1 cut(s)	796
Cfr10I	RCCGGY	2 cut(s)	52, 862
Cfr13I	GGNCC	1 cut(s)	369
Cfr42I	CCGCGG	1 cut(s)	429
CpoI	CGGWCCG	1 cut(s)	369
CseI	GACGC	1 cut(s)	841
CsiI	ACCWGGT	1 cut(s)	743
Csp6I	GTAC	1 cut(s)	834
CspI	CGGWCCG	1 cut(s)	369
CviQI	GTAC	1 cut(s)	834
DpnI	GATC	3 cut(s)	20, 179, 233
DpnII	GATC	3 cut(s)	18, 177, 231
DrdI	GACNNNNNNGTC	1 cut(s)	778
DseDI	GACNNNNNNGTC	1 cut(s)	778
EaeI	YGGCCR	9 cut(s)	54, 405, 429, 504, 561, 582, 606, 648, 783
EagI	CGGCCG	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	361
EclXI	CGGCCG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	369
Eco52I	CGGCCG	1 cut(s)	54
Eco81I	CCTNAGG	2 cut(s)	69, 681
EcoRII	CCWGG	3 cut(s)	140, 743, 754
EcoT38I	GRGCYC	1 cut(s)	108
FaiI	YATR	3 cut(s)	168, 228, 351
FauI	CCCGC	3 cut(s)	57, 130, 400
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	2 cut(s)	144, 197
FriOI	GRGCYC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	777, 882
GlaI	GCGC	1 cut(s)	795
HaeII	RGCGCY	1 cut(s)	797
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	1 cut(s)	796
Hin6I	GCGC	1 cut(s)	794
HinP1I	GCGC	1 cut(s)	794
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HindIII	AAGCTT	2 cut(s)	284, 704
HinfI	GANTC	2 cut(s)	196, 355
Hpy166II	GTNNAC	1 cut(s)	741
Hpy188I	TCNGA	2 cut(s)	322, 771
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	741
Hpy99I	CGWCG	5 cut(s)	26, 44, 62, 364, 775
HpyAV	CCTTC	6 cut(s)	130, 757, 796, 814, 880, 885
HpyCH4III	ACNGT	2 cut(s)	40, 838
HpyCH4IV	ACGT	1 cut(s)	737
HpySE526I	ACGT	1 cut(s)	737
HspAI	GCGC	1 cut(s)	794
KroI	GCCGGC	2 cut(s)	52, 862
KroNI	GCCGGC	2 cut(s)	54, 864
Ksp22I	TGATCA	1 cut(s)	177
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	3 cut(s)	18, 177, 231
LweI	GCATC	1 cut(s)	175
MabI	ACCWGGT	1 cut(s)	743
MaeI	CTAG	2 cut(s)	777, 882
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	20, 179, 233
MboI	GATC	3 cut(s)	18, 177, 231
MboII	GAAGA	5 cut(s)	182, 316, 424, 811, 829
MhlI	GDGCHC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	2 cut(s)	345, 794
MnlI	CCTC	7 cut(s)	64, 171, 201, 241, 279, 726, 753
MroNI	GCCGGC	2 cut(s)	52, 862
MseI	TTAA	2 cut(s)	201, 708
MspA1I	CMGCKG	4 cut(s)	125, 395, 428, 521
MspCI	CTTAAG	2 cut(s)	200, 707
MspR9I	CCNGG	4 cut(s)	142, 668, 745, 756
MvaI	CCWGG	3 cut(s)	142, 745, 756
MvnI	CGCG	1 cut(s)	428
NaeI	GCCGGC	2 cut(s)	54, 864
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	3 cut(s)	18, 177, 231
NgoMIV	GCCGGC	2 cut(s)	52, 862
NlaIV	GGNNCC	3 cut(s)	105, 768, 825
NmeAIII	GCCGAG	1 cut(s)	870
NmuCI	GTSAC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 30, 318
PdiI	GCCGGC	2 cut(s)	54, 864
PfeI	GAWTC	1 cut(s)	355
PflFI	GACNNNGTC	2 cut(s)	475, 745
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp6I	CCWGG	3 cut(s)	140, 743, 754
PspGI	CCWGG	3 cut(s)	140, 743, 754
PspN4I	GGNNCC	3 cut(s)	105, 768, 825
PspPI	GGNCC	1 cut(s)	369
PsyI	GACNNNGTC	2 cut(s)	475, 745
RsaI	GTAC	1 cut(s)	835
RsaNI	GTAC	1 cut(s)	834
Rsr2I	CGGWCCG	1 cut(s)	369
RsrII	CGGWCCG	1 cut(s)	369
SacII	CCGCGG	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	201, 708
Sau3AI	GATC	3 cut(s)	18, 177, 231
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	4 cut(s)	142, 668, 745, 756
SduI	GDGCHC	1 cut(s)	108
SexAI	ACCWGGT	1 cut(s)	743
SfaNI	GCATC	1 cut(s)	175
SfiI	GGCCNNNNNGGCC	1 cut(s)	95
Sfr303I	CCGCGG	1 cut(s)	429
SgrBI	CCGCGG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	200, 707
SmoI	CTYRAG	2 cut(s)	200, 707
SspMI	CTAG	2 cut(s)	777, 882
StyD4I	CCNGG	4 cut(s)	140, 666, 743, 754
TaaI	ACNGT	2 cut(s)	40, 838
TaiI	ACGT	1 cut(s)	740
TaqI	TCGA	2 cut(s)	218, 246
TaqII	GACCGA	2 cut(s)	357, 469
TauI	GCSGC	8 cut(s)	377, 425, 428, 431, 491, 521, 563, 599
TfiI	GAWTC	1 cut(s)	355
Tru1I	TTAA	2 cut(s)	201, 708
Tru9I	TTAA	2 cut(s)	201, 708
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	183, 232
TspGWI	ACGGA	1 cut(s)	348
Tth111I	GACNNNGTC	2 cut(s)	475, 745
Vha464I	CTTAAG	2 cut(s)	200, 707
VpaK11BI	GGWCC	1 cut(s)	369
XspI	CTAG	2 cut(s)	777, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.