Rmu_sc0001647.1_g000029

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001647.1
OG0006725
Physical Location & Seq
Forward (+)
115589 .. 118950
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1080 bp
atgggagagcgtaaggttctcaacaagtactacccgccggacttcgacccgtccaagctgccccgagtccggcggcccaagaaccagcagattaaggtccgtatgatgcttccgatgagcatcagatgcaacacctgtggcaactacatctacagggcaccaaattcaactcccggaaagaagatgtcgtcggcgagattttacttcaagtgcaccaagtgctcggcggagcttgcgatgaagacggacccgcagaactcagactatgtggtggaggccggggctacacgaaatttcgaaccttggcgtaatgaggatgaggaagtggataaggagaagcagaagagggaggccgaagaaatgggagatgccatgaaatctttggagaacagaaccttggattcgaaaagagagatggatatccttgccgctttggatgagatgaagtccatgaagtccaggcatgcaactgtgagtgtggatgagatgttggaggctttacaacatacggttgcgcacaaggagaaaaggctggaagaggaggatgaagcagtcataaaatcgatcgtattccatgttagtacttacattctctctcttttcaactcaaaagattatgttcgaaggattgatgatgatgatttagatgatgatgaagatttattagagccgttaagtggcaatggtgaaacgtctaatcatctgtcaaagttatctaatgaatatgtatacatatttgccatgcagaaacaaaagctttctcaagataatagcaaaccaacaggttcgttgacaaaaaccagtatatctgatagctcaagcagcagaggaaaacagaatggttcagaagattctaaaatcattttcacgtctccaactgttaggctttcagtagttaagaaaccagtggtggctaaagttaacaatttggcaaaagtggacgagaaagaagttggagaggagtctaaaagtttgactaaagatgagaaagaagaggacggcaagaataagaccgacggtggaagcaacgtattacaatcgctgttccaaaactacaacagtgatgatagtgatgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

359

Amino Acids

40.79

Weight (kDa)

5.47

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 9 - 356 1.1e-74 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 516
AccB1I GGYRCC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 729
AciI CCGC 5 cut(s) 35, 73, 227, 251, 429
AcsI RAATTY 2 cut(s) 163, 292
AdeI CACNNNGTG 1 cut(s) 219
AfaI GTAC 2 cut(s) 29, 583
AfiI CCNNNNNNNGG 2 cut(s) 69, 677
AgsI TTSAA 3 cut(s) 168, 208, 604
AjiI CACGTC 1 cut(s) 870
AjnI CCWGG 1 cut(s) 458
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 4 cut(s) 58, 232, 757, 816
AluI AGCT 4 cut(s) 58, 232, 757, 816
Alw21I GWGCWC 2 cut(s) 215, 224
Alw26I GTCTC 1 cut(s) 876
Alw44I GTGCAC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 3 cut(s) 74, 276, 351
ApaLI GTGCAC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 58, 822
ApoI RAATTY 2 cut(s) 163, 292
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 3 cut(s) 75, 97, 247
AsuC2I CCSGG 2 cut(s) 174, 280
AsuHPI GGTGA 1 cut(s) 698
AsuII TTCGAA 3 cut(s) 297, 404, 622
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 97, 247
BaeGI GKGCMC 2 cut(s) 160, 215
BanI GGYRCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 2 cut(s) 215, 224
BbvI GCAGC 2 cut(s) 45, 834
BccI CCATC 1 cut(s) 409
BceAI ACGGC 2 cut(s) 655, 1015
BciT130I CCWGG 1 cut(s) 460
BcnI CCSGG 2 cut(s) 174, 280
BcoDI GTCTC 1 cut(s) 876
BfmI CTRYAG 1 cut(s) 151
BisI GCNGC 4 cut(s) 59, 74, 429, 823
BlsI GCNGC 4 cut(s) 60, 75, 430, 824
BmcAI AGTACT 2 cut(s) 29, 583
Bme1390I CCNGG 3 cut(s) 174, 280, 460
Bme18I GGWCC 2 cut(s) 97, 247
BmeT110I CYCGRG 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 870
BmgT120I GGNCC 3 cut(s) 75, 97, 247
BmiI GGNNCC 2 cut(s) 159, 249
BmrFI CCNGG 3 cut(s) 174, 280, 460
BmsI GCATC 4 cut(s) 96, 116, 129, 358
BpiI GAAGAC 1 cut(s) 248
Bpu14I TTCGAA 3 cut(s) 297, 404, 622
BpuEI CTTGAG 2 cut(s) 747, 802
BpuMI CCSGG 2 cut(s) 174, 280
Bsa29I ATCGAT 1 cut(s) 563
BsaBI GATNNNNATC 2 cut(s) 119, 419
BsaJI CCNNGG 3 cut(s) 279, 302, 396
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 677
Bse1I ACTGG 2 cut(s) 801, 905
Bse3DI GCAATG 1 cut(s) 688
Bse8I GATNNNNATC 2 cut(s) 119, 419
BseBI CCWGG 1 cut(s) 460
BseCI ATCGAT 1 cut(s) 563
BseDI CCNNGG 3 cut(s) 279, 302, 396
BseGI GGATG 4 cut(s) 322, 442, 487, 550
BseJI GATNNNNATC 2 cut(s) 119, 419
BseLI CCNNNNNNNGG 2 cut(s) 69, 677
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 801, 905
BseRI GAGGAG 2 cut(s) 554, 974
BseSI GKGCMC 2 cut(s) 160, 215
BseXI GCAGC 2 cut(s) 45, 834
Bsh1285I CGRYCG 1 cut(s) 567
BshFI GGCC 3 cut(s) 76, 278, 353
BshNI GGYRCC 1 cut(s) 157
BshVI ATCGAT 1 cut(s) 563
BsiEI CGRYCG 1 cut(s) 567
BsiHKAI GWGCWC 2 cut(s) 215, 224
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 4 cut(s) 38, 70, 174, 279
BslI CCNNNNNNNGG 2 cut(s) 69, 677
BsmAI GTCTC 1 cut(s) 876
BsmBI CGTCTC 1 cut(s) 876
BsnI GGCC 3 cut(s) 76, 278, 353
BsoBI CYCGRG 1 cut(s) 63
Bsp119I TTCGAA 3 cut(s) 297, 404, 622
Bsp1286I GDGCHC 3 cut(s) 160, 215, 224
Bsp143I GATC 1 cut(s) 564
BspACI CCGC 5 cut(s) 35, 73, 227, 251, 429
BspANI GGCC 3 cut(s) 76, 278, 353
BspCNI CTCAG 1 cut(s) 272
BspDI ATCGAT 1 cut(s) 563
BspLI GGNNCC 2 cut(s) 159, 249
BspT104I TTCGAA 3 cut(s) 297, 404, 622
BspT107I GGYRCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 688
BsrI ACTGG 2 cut(s) 801, 905
BssECI CCNNGG 3 cut(s) 279, 302, 396
BssMI GATC 1 cut(s) 564
BssNAI GTATAC 1 cut(s) 730
BssT1I CCWWGG 2 cut(s) 302, 396
Bst1107I GTATAC 1 cut(s) 730
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 5 cut(s) 472, 511, 880, 1019, 1061
Bst6I CTCTTC 3 cut(s) 338, 531, 987
BstAPI GCANNNNNTGC 2 cut(s) 126, 219
BstBI TTCGAA 3 cut(s) 297, 404, 622
BstC8I GCNNGC 2 cut(s) 234, 465
BstDEI CTNAG 1 cut(s) 259
BstF5I GGATG 4 cut(s) 322, 442, 487, 550
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 1 cut(s) 567
BstMAI GTCTC 1 cut(s) 876
BstMBI GATC 1 cut(s) 564
BstMCI CGRYCG 1 cut(s) 567
BstMWI GCNNNNNNNGC 4 cut(s) 126, 219, 233, 822
BstNI CCWGG 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 172, 278, 458
BstSFI CTRYAG 1 cut(s) 151
BstSLI GKGCMC 2 cut(s) 160, 215
BstV1I GCAGC 2 cut(s) 45, 834
BstV2I GAAGAC 1 cut(s) 248
BstZ17I GTATAC 1 cut(s) 730
Bsu15I ATCGAT 1 cut(s) 563
BsuRI GGCC 3 cut(s) 76, 278, 353
BsuTUI ATCGAT 1 cut(s) 563
BtgZI GCGATG 1 cut(s) 251
BtrI CACGTC 1 cut(s) 870
BtsCI GGATG 4 cut(s) 322, 442, 487, 550
BtsIMutI CAGTG 2 cut(s) 912, 1066
Cac8I GCNNGC 2 cut(s) 234, 465
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 3 cut(s) 75, 97, 247
ClaI ATCGAT 1 cut(s) 563
Csp6I GTAC 2 cut(s) 28, 582
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 5 cut(s) 373, 451, 464, 575, 742
CviQI GTAC 2 cut(s) 28, 582
DdeI CTNAG 1 cut(s) 259
DpnI GATC 1 cut(s) 566
DpnII GATC 1 cut(s) 564
DraIII CACNNNGTG 1 cut(s) 219
Eam1104I CTCTTC 3 cut(s) 338, 531, 987
EarI CTCTTC 3 cut(s) 338, 531, 987
EciI GGCGGA 1 cut(s) 242
Eco130I CCWWGG 2 cut(s) 302, 396
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 97, 247
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 458
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 302, 396
ErhI CCWWGG 2 cut(s) 302, 396
Esp3I CGTCTC 1 cut(s) 876
FaeI CATG 5 cut(s) 376, 454, 467, 578, 745
FatI CATG 5 cut(s) 372, 450, 463, 574, 741
FauI CCCGC 2 cut(s) 42, 258
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 4 cut(s) 59, 74, 429, 823
FokI GGATG 4 cut(s) 329, 449, 494, 557
Fsp4HI GCNGC 4 cut(s) 59, 74, 429, 823
FspI TGCGCA 1 cut(s) 516
GlaI GCGC 1 cut(s) 516
GluI GCNGC 4 cut(s) 59, 74, 429, 823
HaeIII GGCC 3 cut(s) 76, 278, 353
HapII CCGG 4 cut(s) 38, 70, 174, 279
HhaI GCGC 1 cut(s) 517
Hin1II CATG 5 cut(s) 376, 454, 467, 578, 745
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HincII GTYRAC 2 cut(s) 792, 922
HindII GTYRAC 2 cut(s) 792, 922
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 4 cut(s) 66, 401, 851, 962
HpaI GTTAAC 1 cut(s) 922
HpaII CCGG 4 cut(s) 38, 70, 174, 279
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 5 cut(s) 213, 730, 792, 922, 940
Hpy188I TCNGA 5 cut(s) 114, 125, 262, 811, 847
Hpy188III TCNNGA 1 cut(s) 764
Hpy8I GTNNAC 5 cut(s) 213, 730, 792, 922, 940
Hpy99I CGWCG 2 cut(s) 193, 1019
HpyAV CCTTC 1 cut(s) 618
HpyCH4III ACNGT 5 cut(s) 472, 511, 880, 1019, 1061
HpyCH4IV ACGT 3 cut(s) 692, 869, 1029
HpyCH4V TGCA 4 cut(s) 129, 213, 467, 745
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 219, 233, 822
HpyF3I CTNAG 1 cut(s) 259
HpySE526I ACGT 3 cut(s) 692, 869, 1029
Hsp92II CATG 5 cut(s) 376, 454, 467, 578, 745
HspAI GCGC 1 cut(s) 515
KspAI GTTAAC 1 cut(s) 922
Kzo9I GATC 1 cut(s) 564
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 2 cut(s) 45, 834
LweI GCATC 4 cut(s) 96, 116, 129, 358
MaeII ACGT 3 cut(s) 692, 869, 1029
MalI GATC 1 cut(s) 566
MboI GATC 1 cut(s) 564
MboII GAAGA 8 cut(s) 193, 253, 355, 368, 548, 668, 860, 1004
MhlI GDGCHC 3 cut(s) 160, 215, 224
MluCI AATT 3 cut(s) 163, 292, 925
MlyI GAGTC 2 cut(s) 75, 971
MmeI TCCRAC 3 cut(s) 471, 899, 934
MseI TTAA 4 cut(s) 93, 674, 897, 921
MspI CCGG 4 cut(s) 38, 70, 174, 279
MspR9I CCNGG 3 cut(s) 174, 280, 460
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 4 cut(s) 126, 219, 233, 822
NciI CCSGG 2 cut(s) 174, 280
NdeII GATC 1 cut(s) 564
NlaIII CATG 5 cut(s) 376, 454, 467, 578, 745
NlaIV GGNNCC 2 cut(s) 159, 249
NmeAIII GCCGAG 1 cut(s) 203
NsbI TGCGCA 1 cut(s) 516
NspI RCATGY 1 cut(s) 467
NspV TTCGAA 3 cut(s) 297, 404, 622
PaeI GCATGC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 401, 851
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 4 cut(s) 60, 75, 430, 824
Ple19I CGATCG 1 cut(s) 567
PleI GAGTC 2 cut(s) 74, 970
PpsI GAGTC 2 cut(s) 74, 970
Psp6I CCWGG 1 cut(s) 458
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 2 cut(s) 159, 249
PspPI GGNCC 3 cut(s) 75, 97, 247
PvuI CGATCG 1 cut(s) 567
RsaI GTAC 2 cut(s) 29, 583
RsaNI GTAC 2 cut(s) 28, 582
SaqAI TTAA 4 cut(s) 93, 674, 897, 921
SatI GCNGC 4 cut(s) 59, 74, 429, 823
Sau3AI GATC 1 cut(s) 564
Sau96I GGNCC 3 cut(s) 75, 97, 247
ScaI AGTACT 2 cut(s) 29, 583
SchI GAGTC 2 cut(s) 75, 971
ScrFI CCNGG 3 cut(s) 174, 280, 460
SduI GDGCHC 3 cut(s) 160, 215, 224
SfaNI GCATC 4 cut(s) 96, 116, 129, 358
SfcI CTRYAG 1 cut(s) 151
SfuI TTCGAA 3 cut(s) 297, 404, 622
SinI GGWCC 2 cut(s) 97, 247
SmlI CTYRAG 2 cut(s) 762, 817
SmoI CTYRAG 2 cut(s) 762, 817
SphI GCATGC 1 cut(s) 467
Sse9I AATT 3 cut(s) 163, 292, 925
SsiI CCGC 5 cut(s) 35, 73, 227, 251, 429
StyD4I CCNGG 3 cut(s) 172, 278, 458
StyI CCWWGG 2 cut(s) 302, 396
TaaI ACNGT 5 cut(s) 472, 511, 880, 1019, 1061
TaiI ACGT 3 cut(s) 695, 872, 1032
TaqI TCGA 5 cut(s) 45, 297, 404, 563, 622
TaqII GACCGA 1 cut(s) 1028
TasI AATT 3 cut(s) 163, 292, 925
TatI WGTACW 2 cut(s) 27, 581
TauI GCSGC 2 cut(s) 76, 431
TfiI GAWTC 2 cut(s) 401, 851
Tru1I TTAA 4 cut(s) 93, 674, 897, 921
Tru9I TTAA 4 cut(s) 93, 674, 897, 921
TscAI CASTG 2 cut(s) 912, 1066
TseI GCWGC 2 cut(s) 58, 822
TspDTI ATGAA 7 cut(s) 254, 389, 458, 467, 561, 669, 735
TspGWI ACGGA 2 cut(s) 89, 260
TspRI CASTG 2 cut(s) 912, 1066
VneI GTGCAC 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 97, 247
XapI RAATTY 2 cut(s) 163, 292
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 729
ZrmI AGTACT 2 cut(s) 29, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.