Rmu_sc0002038.1_g000037

ABC transporter A family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002038.1
OG0005930
Physical Location & Seq
Reverse (-)
129115 .. 135503
6389 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1152 bp
atggacgagcaagacaactacccggttgggagtggctgcatgcatgagctagtaagggagctgtatgcacaggcaggtaacatgcttattcatctgaggcccgaagaagagttgagcttgggaggtgagacccggaagctcacgtacccggaagcctataatacccgacatgacccttgctcaaggtcggaggctcataccctaactcctagagaccctccttctagcgccaatgtttttgttgaagaatacggcggggctaaccatgccgcggggcccacctatgaggtcattgattatgcttggcggtatgtacagaggatagggaaagtcaagaagttgctattggaaccggatacaagtcatgcaattatttgcaacaatctcaaaaaggtttatcctggaagagatggaaaccctgacaaatttgccatgaaagggatatctcttactttgtctcgaggggagtgctttggtatgcttggccctaatggtgctgggaagacctcttttattaatatggcagtggaagaatctttgaaaagtatcaatttgtttcatggtggggttgcagaccaaagagctggaaagtatagtggagatagccacagacagcggataataagttggattgatggcacaggacagctatcagctgcatttgacttcacaaccaagggagttcttcagtgcgccgacggctcacccaaggtcaaagccgcaactggcatcgatcgcggggttgtcggctggagtaaggcccctactaccctcgtgcagttgatagagagagtgcccgcctctcatcgtgggccgcagaaggagagggcagtgccctcaaatgaaccagttacctctgcagggctggaacagcagaagaaatcgagaactgtcatcgctggtgccacacgggtggtgctgcagaagaagcggcgacagaatgacacctatgaggaggaaggagacgacgaggggaccatcggggccctccagcagaagaaggtaaggaaggacgctccgcaggtgactgtggccgttgctggggaagtgccgtcgagcgggctagactcgtttgcctcctatgccgaattcataaccgactccgagctggagtttctcttccacctctgtgagcggctgggaattggctaa

Protein Analysis

383

Amino Acids

41.79

Weight (kDa)

6.39

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 146 - 177 6.9e-06 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1012
Acc36I ACCTGC 2 cut(s) 65, 1012
AccB1I GGYRCC 1 cut(s) 902
AccBSI CCGCTC 2 cut(s) 1059, 1135
AccII CGCG 2 cut(s) 272, 738
AcoI YGGCCR 1 cut(s) 1032
AcsI RAATTY 2 cut(s) 425, 1088
AcuI CTGAAG 1 cut(s) 671
AfaI GTAC 2 cut(s) 146, 315
AfiI CCNNNNNNNGG 5 cut(s) 271, 438, 861, 1041, 1058
AgsI TTSAA 2 cut(s) 245, 541
AjnI CCWGG 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AleI CACNNNNGTG 2 cut(s) 911, 1128
AluBI AGCT 8 cut(s) 49, 61, 117, 139, 584, 649, 656, 1108
AluI AGCT 8 cut(s) 49, 61, 117, 139, 584, 649, 656, 1108
Alw26I GTCTC 4 cut(s) 122, 207, 462, 957
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 7 cut(s) 98, 275, 484, 759, 812, 984, 1032
ApaI GGGCCC 2 cut(s) 279, 988
ApeKI GCWGC 3 cut(s) 36, 656, 919
ApoI RAATTY 2 cut(s) 425, 1088
AseI ATTAAT 1 cut(s) 516
AspLEI GCGC 2 cut(s) 230, 695
AspS9I GGNCC 9 cut(s) 99, 275, 276, 485, 760, 812, 975, 984, 985
AsuC2I CCSGG 3 cut(s) 23, 133, 149
AsuHPI GGTGA 3 cut(s) 137, 696, 1036
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 1 cut(s) 975
BaeGI GKGCMC 4 cut(s) 279, 798, 837, 988
BanI GGYRCC 1 cut(s) 902
BanII GRGCYC 2 cut(s) 279, 988
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BauI CACGAG 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 509
BbvI GCAGC 3 cut(s) 23, 643, 906
BccI CCATC 3 cut(s) 404, 629, 986
BceAI ACGGC 4 cut(s) 268, 715, 1019, 1036
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 1 cut(s) 349
BcnI CCSGG 3 cut(s) 23, 133, 149
BcoDI GTCTC 4 cut(s) 122, 207, 462, 957
BfaI CTAG 4 cut(s) 50, 210, 225, 1064
BfmI CTRYAG 2 cut(s) 858, 920
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 2 cut(s) 65, 1012
BfuI GTATCC 1 cut(s) 349
BisI GCNGC 8 cut(s) 37, 270, 657, 720, 815, 920, 932, 1136
BlsI GCNGC 8 cut(s) 38, 271, 658, 721, 816, 921, 933, 1137
Bme1390I CCNGG 4 cut(s) 23, 133, 149, 402
Bme18I GGWCC 1 cut(s) 975
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 9 cut(s) 99, 275, 276, 485, 760, 812, 975, 984, 985
BmiI GGNNCC 8 cut(s) 276, 277, 351, 762, 904, 976, 985, 986
BmrFI CCNGG 4 cut(s) 23, 133, 149, 402
BmsI GCATC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 3 cut(s) 772, 974, 1130
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 3 cut(s) 23, 133, 149
Bsa29I ATCGAT 1 cut(s) 732
BsaAI YACGTR 1 cut(s) 144
BsaI GGTCTC 2 cut(s) 122, 207
BsaJI CCNNGG 3 cut(s) 270, 675, 708
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 5 cut(s) 271, 438, 861, 1041, 1058
Bse1I ACTGG 2 cut(s) 730, 848
BseBI CCWGG 1 cut(s) 402
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 270, 675, 708
BseLI CCNNNNNNNGG 5 cut(s) 271, 438, 861, 1041, 1058
BseMII CTCAG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 730, 848
BseRI GAGGAG 1 cut(s) 968
BseSI GKGCMC 4 cut(s) 279, 798, 837, 988
BseXI GCAGC 3 cut(s) 23, 643, 906
BseYI CCCAGC 3 cut(s) 497, 1040, 1138
BsgI GTGCAG 1 cut(s) 797
Bsh1236I CGCG 2 cut(s) 272, 738
Bsh1285I CGRYCG 1 cut(s) 736
BshFI GGCC 7 cut(s) 100, 277, 486, 761, 814, 986, 1034
BshNI GGYRCC 1 cut(s) 902
BshVI ATCGAT 1 cut(s) 732
BsiEI CGRYCG 1 cut(s) 736
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 4 cut(s) 23, 133, 149, 353
BslFI GGGAC 1 cut(s) 988
BslI CCNNNNNNNGG 5 cut(s) 271, 438, 861, 1041, 1058
BsmAI GTCTC 4 cut(s) 122, 207, 462, 957
BsmBI CGTCTC 1 cut(s) 957
BsmFI GGGAC 1 cut(s) 988
BsnI GGCC 7 cut(s) 100, 277, 486, 761, 814, 986, 1034
Bso31I GGTCTC 2 cut(s) 122, 207
BsoBI CYCGRG 1 cut(s) 459
Bsp120I GGGCCC 2 cut(s) 275, 984
Bsp1286I GDGCHC 4 cut(s) 279, 798, 837, 988
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 1 cut(s) 733
BspANI GGCC 7 cut(s) 100, 277, 486, 761, 814, 986, 1034
BspCNI CTCAG 1 cut(s) 87
BspDI ATCGAT 1 cut(s) 732
BspFNI CGCG 2 cut(s) 272, 738
BspLI GGNNCC 8 cut(s) 276, 277, 351, 762, 904, 976, 985, 986
BspMAI CTGCAG 2 cut(s) 862, 924
BspMI ACCTGC 2 cut(s) 65, 1012
BspT107I GGYRCC 1 cut(s) 902
BspTNI GGTCTC 2 cut(s) 122, 207
BsrBI CCGCTC 2 cut(s) 1059, 1135
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 2 cut(s) 730, 848
BssECI CCNNGG 3 cut(s) 270, 675, 708
BssMI GATC 1 cut(s) 733
BssSI CACGAG 1 cut(s) 773
BssT1I CCWWGG 2 cut(s) 675, 708
Bst2BI CACGAG 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 892, 1030
Bst6I CTCTTC 3 cut(s) 102, 400, 1124
BstAUI TGTACA 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 3 cut(s) 41, 798, 1061
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 270
BstFNI CGCG 2 cut(s) 272, 738
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 230, 695
BstKTI GATC 1 cut(s) 736
BstMAI GTCTC 4 cut(s) 122, 207, 462, 957
BstMBI GATC 1 cut(s) 733
BstMCI CGRYCG 1 cut(s) 736
BstMWI GCNNNNNNNGC 6 cut(s) 266, 699, 735, 871, 928, 1082
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 43, 85
BstSCI CCNGG 4 cut(s) 21, 131, 147, 400
BstSFI CTRYAG 2 cut(s) 858, 920
BstSLI GKGCMC 4 cut(s) 279, 798, 837, 988
BstUI CGCG 2 cut(s) 272, 738
BstV1I GCAGC 3 cut(s) 23, 643, 906
BstV2I GAAGAC 1 cut(s) 509
BstXI CCANNNNNNTGG 2 cut(s) 584, 913
Bsu15I ATCGAT 1 cut(s) 732
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 7 cut(s) 100, 277, 486, 761, 814, 986, 1034
BsuTUI ATCGAT 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 880
BtsI GCAGTG 2 cut(s) 531, 837
BtsIMutI CAGTG 3 cut(s) 531, 695, 837
BveI ACCTGC 2 cut(s) 65, 1012
Cac8I GCNNGC 3 cut(s) 41, 798, 1061
CfoI GCGC 2 cut(s) 230, 695
Cfr13I GGNCC 9 cut(s) 99, 275, 276, 485, 760, 812, 975, 984, 985
Cfr42I CCGCGG 1 cut(s) 273
ClaI ATCGAT 1 cut(s) 732
CseI GACGC 1 cut(s) 1022
Csp6I GTAC 2 cut(s) 145, 314
CviAII CATG 8 cut(s) 40, 44, 82, 170, 266, 365, 433, 560
CviQI GTAC 2 cut(s) 145, 314
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 735
DpnII GATC 1 cut(s) 733
EaeI YGGCCR 1 cut(s) 1032
Eam1104I CTCTTC 3 cut(s) 102, 400, 1124
EarI CTCTTC 3 cut(s) 102, 400, 1124
Eco130I CCWWGG 2 cut(s) 675, 708
Eco24I GRGCYC 2 cut(s) 279, 988
Eco31I GGTCTC 2 cut(s) 122, 207
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 975
Eco57I CTGAAG 1 cut(s) 671
Eco88I CYCGRG 1 cut(s) 459
EcoO109I RGGNCCY 4 cut(s) 275, 760, 984, 985
EcoRI GAATTC 1 cut(s) 1088
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 675, 708
EcoT22I ATGCAT 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 279, 988
ErhI CCWWGG 2 cut(s) 675, 708
Esp3I CGTCTC 1 cut(s) 957
FaeI CATG 8 cut(s) 43, 47, 85, 173, 269, 368, 436, 563
FaqI GGGAC 1 cut(s) 988
FatI CATG 8 cut(s) 39, 43, 81, 169, 265, 364, 432, 559
FauI CCCGC 5 cut(s) 248, 265, 731, 805, 1052
Fnu4HI GCNGC 8 cut(s) 37, 270, 657, 720, 815, 920, 932, 1136
FriOI GRGCYC 2 cut(s) 279, 988
Fsp4HI GCNGC 8 cut(s) 37, 270, 657, 720, 815, 920, 932, 1136
FspBI CTAG 4 cut(s) 50, 210, 225, 1064
GlaI GCGC 2 cut(s) 229, 694
GluI GCNGC 8 cut(s) 37, 270, 657, 720, 815, 920, 932, 1136
GsaI CCCAGC 3 cut(s) 501, 1044, 1142
GsuI CTGGAG 3 cut(s) 772, 974, 1130
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 7 cut(s) 100, 277, 486, 761, 814, 986, 1034
HapII CCGG 4 cut(s) 23, 133, 149, 353
HgaI GACGC 1 cut(s) 1022
HhaI GCGC 2 cut(s) 230, 695
Hin1II CATG 8 cut(s) 43, 47, 85, 173, 269, 368, 436, 563
Hin6I GCGC 2 cut(s) 228, 693
HinP1I GCGC 2 cut(s) 228, 693
HinfI GANTC 3 cut(s) 533, 1067, 1100
HpaII CCGG 4 cut(s) 23, 133, 149, 353
HphI GGTGA 3 cut(s) 137, 696, 1036
Hpy188I TCNGA 3 cut(s) 96, 190, 1105
Hpy188III TCNNGA 3 cut(s) 334, 459, 885
Hpy99I CGWCG 3 cut(s) 701, 971, 1057
HpyAV CCTTC 5 cut(s) 231, 814, 953, 994, 1003
HpyCH4III ACNGT 2 cut(s) 892, 1030
HpyCH4IV ACGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 6 cut(s) 266, 699, 735, 871, 928, 1082
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 8 cut(s) 43, 47, 85, 173, 269, 368, 436, 563
HspAI GCGC 2 cut(s) 228, 693
KspI CCGCGG 1 cut(s) 273
Kzo9I GATC 1 cut(s) 733
LmnI GCTCC 2 cut(s) 58, 1021
Lsp1109I GCAGC 3 cut(s) 23, 643, 906
LweI GCATC 1 cut(s) 738
MaeI CTAG 4 cut(s) 50, 210, 225, 1064
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 3 cut(s) 77, 850, 1024
MalI GATC 1 cut(s) 735
MbiI CCGCTC 2 cut(s) 1059, 1135
MboI GATC 1 cut(s) 733
MhlI GDGCHC 4 cut(s) 279, 798, 837, 988
MluCI AATT 5 cut(s) 369, 425, 550, 1088, 1143
MlyI GAGTC 2 cut(s) 1061, 1094
MmeI TCCRAC 2 cut(s) 168, 608
Mph1103I ATGCAT 1 cut(s) 45
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 2 cut(s) 911, 1128
MspA1I CMGCKG 3 cut(s) 272, 616, 656
MspI CCGG 4 cut(s) 23, 133, 149, 353
MspR9I CCNGG 4 cut(s) 23, 133, 149, 402
MvaI CCWGG 1 cut(s) 402
MvnI CGCG 2 cut(s) 272, 738
MwoI GCNNNNNNNGC 6 cut(s) 266, 699, 735, 871, 928, 1082
NciI CCSGG 3 cut(s) 23, 133, 149
NdeII GATC 1 cut(s) 733
NlaIII CATG 8 cut(s) 43, 47, 85, 173, 269, 368, 436, 563
NlaIV GGNNCC 8 cut(s) 276, 277, 351, 762, 904, 976, 985, 986
NmuCI GTSAC 1 cut(s) 1024
NsiI ATGCAT 1 cut(s) 45
NspI RCATGY 2 cut(s) 43, 85
OliI CACNNNNGTG 2 cut(s) 911, 1128
PaeI GCATGC 1 cut(s) 43
PaeR7I CTCGAG 1 cut(s) 459
PaqCI CACCTGC 1 cut(s) 1012
PfeI GAWTC 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 400
PkrI GCNGC 8 cut(s) 38, 271, 658, 721, 816, 921, 933, 1137
Ple19I CGATCG 1 cut(s) 736
PleI GAGTC 2 cut(s) 1061, 1094
PpsI GAGTC 2 cut(s) 1061, 1094
Ppu21I YACGTR 1 cut(s) 144
PshBI ATTAAT 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 400
PspFI CCCAGC 3 cut(s) 497, 1040, 1138
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 8 cut(s) 276, 277, 351, 762, 904, 976, 985, 986
PspOMI GGGCCC 2 cut(s) 275, 984
PspPI GGNCC 9 cut(s) 99, 275, 276, 485, 760, 812, 975, 984, 985
PstI CTGCAG 2 cut(s) 862, 924
PvuI CGATCG 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 2 cut(s) 146, 315
RsaNI GTAC 2 cut(s) 145, 314
RseI CAYNNNNRTG 2 cut(s) 911, 1128
SacII CCGCGG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 8 cut(s) 37, 270, 657, 720, 815, 920, 932, 1136
Sau3AI GATC 1 cut(s) 733
Sau96I GGNCC 9 cut(s) 99, 275, 276, 485, 760, 812, 975, 984, 985
SchI GAGTC 2 cut(s) 1061, 1094
ScrFI CCNGG 4 cut(s) 23, 133, 149, 402
SduI GDGCHC 4 cut(s) 279, 798, 837, 988
SfaNI GCATC 1 cut(s) 738
SfcI CTRYAG 2 cut(s) 858, 920
Sfr274I CTCGAG 1 cut(s) 459
Sfr303I CCGCGG 1 cut(s) 273
SgrBI CCGCGG 1 cut(s) 273
SinI GGWCC 1 cut(s) 975
SlaI CTCGAG 1 cut(s) 459
SmiMI CAYNNNNRTG 2 cut(s) 911, 1128
SmlI CTYRAG 2 cut(s) 181, 459
SmoI CTYRAG 2 cut(s) 181, 459
SphI GCATGC 1 cut(s) 43
Sse9I AATT 5 cut(s) 369, 425, 550, 1088, 1143
SspMI CTAG 4 cut(s) 50, 210, 225, 1064
StyD4I CCNGG 4 cut(s) 21, 131, 147, 400
StyI CCWWGG 2 cut(s) 675, 708
TaaI ACNGT 2 cut(s) 892, 1030
TaiI ACGT 1 cut(s) 146
TaqI TCGA 4 cut(s) 460, 732, 884, 1055
TasI AATT 5 cut(s) 369, 425, 550, 1088, 1143
TatI WGTACW 1 cut(s) 313
TauI GCSGC 5 cut(s) 272, 722, 817, 934, 1138
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 3 cut(s) 531, 695, 837
TseFI GTSAC 1 cut(s) 1024
TseI GCWGC 3 cut(s) 36, 656, 919
Tsp45I GTSAC 1 cut(s) 1024
TspDTI ATGAA 5 cut(s) 80, 449, 548, 858, 1081
TspRI CASTG 3 cut(s) 531, 695, 837
VpaK11BI GGWCC 1 cut(s) 975
VspI ATTAAT 1 cut(s) 516
XapI RAATTY 2 cut(s) 425, 1088
XceI RCATGY 2 cut(s) 43, 85
XhoI CTCGAG 1 cut(s) 459
XspI CTAG 4 cut(s) 50, 210, 225, 1064
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.