Rmu_sc0002146.1_g000001

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002146.1
OG0002011
Physical Location & Seq
Forward (+)
1 .. 3246
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 745 bp
aatgaaatcaggaccaaaggatggctggcactctatcatgcctctatgtttgagagggaaatcagcttcacgtttttgcatatttccaaatttgaaggcagcagactgcagtccaggaaacgtacctgtctatctaaatgtttatgacttgacacctgcaaatggctatgtttattgggcaggtgttggtatctttcactctggggtggaagtctatggtgtagaatatgcctttggagcccatgagtactcatcaagtggtgtctttgaggttgaacctcgacaatgccctggcttcaagtttagaaggtcaattttcatcggcacaacatgcttggatcctttccaggttagagagttcatggagcgtcaatctgcaaactacaatggtgacacatatcacttgattgttaagaactgcaaccatttctgtcaagatatatgttataagctgactggaaaatcgacaccaaaatgggtcaatcgcctcgcaaaaataggttcattttgcaactgtatactcccagatgcccttaagtcaaccactgttccacatgaccccaatttcccaggatatgaaagtgaaaaaaagagactaagaagtgccttcacttgcttgtcatcaatctcaatgcctcagagggaagtatcaatgtcgtcattatttctacattcacactataaaggctgcctaccaccgtgggagtttaaaaggtctagaagtggctcattgaaaaaagggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

247

Amino Acids

27.8

Weight (kDa)

9.11

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 42 - 177 7.2e-50 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 448
AarI CACCTGC 2 cut(s) 164, 171
Acc36I ACCTGC 2 cut(s) 164, 171
AccB7I CCANNNNNTGG 1 cut(s) 21
AccI GTMKAC 1 cut(s) 518
AclWI GGATC 2 cut(s) 333, 346
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 2 cut(s) 124, 249
AfiI CCNNNNNNNGG 2 cut(s) 21, 162
AflII CTTAAG 1 cut(s) 534
AgsI TTSAA 4 cut(s) 95, 276, 299, 734
AjnI CCWGG 4 cut(s) 113, 290, 346, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
AluBI AGCT 2 cut(s) 66, 452
AluI AGCT 2 cut(s) 66, 452
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 2 cut(s) 333, 346
ApeKI GCWGC 2 cut(s) 99, 688
ApoI RAATTY 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 402
AvaII GGWCC 1 cut(s) 12
BamHI GGATCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 111, 675
BccI CCATC 1 cut(s) 15
BciT130I CCWGG 4 cut(s) 115, 292, 348, 571
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 718
BfmI CTRYAG 1 cut(s) 107
BfrI CTTAAG 1 cut(s) 534
BfuAI ACCTGC 2 cut(s) 164, 171
BisI GCNGC 2 cut(s) 100, 689
BlsI GCNGC 2 cut(s) 101, 690
BmcAI AGTACT 1 cut(s) 249
Bme1390I CCNGG 4 cut(s) 115, 292, 348, 571
Bme18I GGWCC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 239, 340
BmrFI CCNGG 4 cut(s) 115, 292, 348, 571
BmsI GCATC 1 cut(s) 518
BoxI GACNNNNGTC 1 cut(s) 109
BsaJI CCNNGG 3 cut(s) 290, 569, 699
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 162
Bse1I ACTGG 1 cut(s) 461
BseBI CCWGG 4 cut(s) 115, 292, 348, 571
BseDI CCNNGG 3 cut(s) 290, 569, 699
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 21, 162
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 111, 675
BslI CCNNNNNNNGG 2 cut(s) 21, 162
BsmAI GTCTC 1 cut(s) 587
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 650
BspLI GGNNCC 2 cut(s) 239, 340
BspMAI CTGCAG 1 cut(s) 111
BspMI ACCTGC 2 cut(s) 164, 171
BspPI GGATC 2 cut(s) 333, 346
BspTI CTTAAG 1 cut(s) 534
BsrI ACTGG 1 cut(s) 461
BssECI CCNNGG 3 cut(s) 290, 569, 699
BssMI GATC 1 cut(s) 338
BssNAI GTATAC 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 519
Bst2UI CCWGG 4 cut(s) 115, 292, 348, 571
Bst4CI ACNGT 3 cut(s) 516, 548, 700
BstAFI CTTAAG 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 597, 637
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 1 cut(s) 341
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 2 cut(s) 237, 331
BstNI CCWGG 4 cut(s) 115, 292, 348, 571
BstNSI RCATGY 1 cut(s) 334
BstPAI GACNNNNGTC 1 cut(s) 109
BstSCI CCNGG 4 cut(s) 113, 290, 346, 569
BstSFI CTRYAG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 111, 675
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BstZ17I GTATAC 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 544
BveI ACCTGC 2 cut(s) 164, 171
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 12
CseI GACGC 1 cut(s) 357
Csp6I GTAC 2 cut(s) 123, 248
CviAII CATG 5 cut(s) 38, 243, 331, 362, 555
CviJI RGCY 8 cut(s) 25, 66, 166, 240, 295, 452, 688, 727
CviKI_1 RGCY 8 cut(s) 25, 66, 166, 240, 295, 452, 688, 727
CviQI GTAC 2 cut(s) 123, 248
DdeI CTNAG 2 cut(s) 597, 637
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
DraI TTTAAA 1 cut(s) 710
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 12
EcoRII CCWGG 4 cut(s) 113, 290, 346, 569
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 5 cut(s) 41, 246, 334, 365, 558
FatI CATG 5 cut(s) 37, 242, 330, 361, 554
FblI GTMKAC 1 cut(s) 518
Fnu4HI GCNGC 2 cut(s) 100, 689
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 100, 689
FspBI CTAG 1 cut(s) 718
GluI GCNGC 2 cut(s) 100, 689
HgaI GACGC 1 cut(s) 357
Hin1II CATG 5 cut(s) 41, 246, 334, 365, 558
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HphI GGTGA 1 cut(s) 402
Hpy166II GTNNAC 2 cut(s) 519, 541
Hpy188I TCNGA 1 cut(s) 640
Hpy188III TCNNGA 3 cut(s) 10, 435, 718
Hpy8I GTNNAC 2 cut(s) 519, 541
HpyAV CCTTC 3 cut(s) 89, 301, 617
HpyCH4III ACNGT 3 cut(s) 516, 548, 700
HpyCH4IV ACGT 2 cut(s) 71, 121
HpyCH4V TGCA 6 cut(s) 79, 109, 159, 378, 421, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 331
HpyF3I CTNAG 2 cut(s) 597, 637
HpySE526I ACGT 2 cut(s) 71, 121
Hsp92II CATG 5 cut(s) 41, 246, 334, 365, 558
Kzo9I GATC 1 cut(s) 338
LmnI GCTCC 2 cut(s) 237, 365
Lsp1109I GCAGC 2 cut(s) 111, 675
LweI GCATC 1 cut(s) 518
MaeI CTAG 1 cut(s) 718
MaeII ACGT 2 cut(s) 71, 121
MaeIII GTNAC 1 cut(s) 390
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 3 cut(s) 89, 313, 563
MnlI CCTC 7 cut(s) 48, 52, 263, 289, 498, 634, 646
MseI TTAA 3 cut(s) 412, 535, 709
MslI CAYNNNNRTG 1 cut(s) 473
MspCI CTTAAG 1 cut(s) 534
MspR9I CCNGG 4 cut(s) 115, 292, 348, 571
MvaI CCWGG 4 cut(s) 115, 292, 348, 571
MwoI GCNNNNNNNGC 2 cut(s) 237, 331
NdeII GATC 1 cut(s) 338
NlaIII CATG 5 cut(s) 41, 246, 334, 365, 558
NlaIV GGNNCC 2 cut(s) 239, 340
NmuCI GTSAC 1 cut(s) 390
NspI RCATGY 1 cut(s) 334
PaqCI CACCTGC 2 cut(s) 164, 171
PflMI CCANNNNNTGG 1 cut(s) 21
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 2 cut(s) 101, 690
PshAI GACNNNNGTC 1 cut(s) 109
PsiI TTATAA 1 cut(s) 448
Psp6I CCWGG 4 cut(s) 113, 290, 346, 569
PspGI CCWGG 4 cut(s) 113, 290, 346, 569
PspN4I GGNNCC 2 cut(s) 239, 340
PspPI GGNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 111
PsuI RGATCY 1 cut(s) 338
RsaI GTAC 2 cut(s) 124, 249
RsaNI GTAC 2 cut(s) 123, 248
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 3 cut(s) 412, 535, 709
SatI GCNGC 2 cut(s) 100, 689
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 12
ScaI AGTACT 1 cut(s) 249
ScrFI CCNGG 4 cut(s) 115, 292, 348, 571
SduI GDGCHC 1 cut(s) 242
SfaNI GCATC 1 cut(s) 518
SfcI CTRYAG 1 cut(s) 107
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse9I AATT 3 cut(s) 89, 313, 563
SspMI CTAG 1 cut(s) 718
StyD4I CCNGG 4 cut(s) 113, 290, 346, 569
TaaI ACNGT 3 cut(s) 516, 548, 700
TaiI ACGT 2 cut(s) 74, 124
TaqI TCGA 2 cut(s) 281, 465
TasI AATT 3 cut(s) 89, 313, 563
TatI WGTACW 1 cut(s) 247
Tru1I TTAA 3 cut(s) 412, 535, 709
Tru9I TTAA 3 cut(s) 412, 535, 709
TscAI CASTG 1 cut(s) 551
TseFI GTSAC 1 cut(s) 390
TseI GCWGC 2 cut(s) 99, 688
Tsp45I GTSAC 1 cut(s) 390
TspDTI ATGAA 5 cut(s) 18, 308, 350, 493, 592
TspRI CASTG 1 cut(s) 551
Van91I CCANNNNNTGG 1 cut(s) 21
Vha464I CTTAAG 1 cut(s) 534
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 89
XbaI TCTAGA 1 cut(s) 717
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 518
XspI CTAG 1 cut(s) 718
ZrmI AGTACT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.