Rmu_sc0002150.1_g000008

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002150.1
OG0005204
Physical Location & Seq
Forward (+)
33193 .. 34014
822 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 822 bp
atggcttcttcggaagccgattcccgtctccgacaggtcgtttctccagccctagagaagatcatcaagaacgcctcatggcgcaagcacgccaagctcgccaacgaatgcaaggccgtcatcgagcgcctctccaacccggacaaggcggcccagcccgccggcccggattccgaacccgacgcctccgagcccggcccgctccacgacggaggctccggtgagtactccctcgccgacgccgagtcgattctcagccctctcatcggcgccgccgcatccggagtgctgaagatcgccgatcccgccgtcgattgcatccagaagctcatcgcgcatggctacctgcgcggcgaggccgacgcctccggtggcgccgaggcgaagttgctgacgaaattgatcgagtccgtttgtaaatgccacgatttgggggacgatcagatggagctgctggtgctgaagacgctgctgtcagcagtgacgtcgatttcgctgcggattcacggcgattgcttgcttcagatagtgaggacttgctacgatatctatttggggagtaagaatatagtgaatcagacgacggcgaaggcctcgctgatccagatgctggtgattgtgttccggcgaatggaggcggactcttctacggtgccgattaatcccattgtggtggcggaattgatggatcccattgagaaatctgatgctgatggctccatgactatgttcgtgcaagggtttattaccaaaattatgtctgacattgatggggtgttgaatccgacgacgcctactaagctttccgggcatgatggggcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

274

Amino Acids

29.06

Weight (kDa)

5.08

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCB PF16213 6 - 214 2.5e-39 Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 472
AatII GACGTC 1 cut(s) 488
Acc36I ACCTGC 1 cut(s) 354
AccB1I GGYRCC 3 cut(s) 269, 374, 652
AccB7I CCANNNNNTGG 2 cut(s) 430, 610
AccBSI CCGCTC 1 cut(s) 202
AccII CGCG 2 cut(s) 335, 351
AccIII TCCGGA 1 cut(s) 281
AclWI GGATC 4 cut(s) 296, 595, 683, 696
AcuI CTGAAG 3 cut(s) 311, 482, 506
AcyI GRCGYC 7 cut(s) 183, 240, 270, 363, 375, 485, 791
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 5 cut(s) 145, 266, 430, 610, 631
AgsI TTSAA 1 cut(s) 781
AhdI GACNNNNNGTC 1 cut(s) 244
AluBI AGCT 4 cut(s) 97, 328, 451, 802
AluI AGCT 4 cut(s) 97, 328, 451, 802
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 4 cut(s) 296, 595, 683, 696
AlwNI CAGNNNCTG 1 cut(s) 610
Aor13HI TCCGGA 1 cut(s) 281
AoxI GGCC 6 cut(s) 114, 150, 163, 196, 357, 591
ApeKI GCWGC 3 cut(s) 451, 469, 496
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
AseI ATTAAT 1 cut(s) 660
AspLEI GCGC 6 cut(s) 84, 129, 272, 337, 351, 377
AspS9I GGNCC 3 cut(s) 151, 164, 197
AsuC2I CCSGG 4 cut(s) 140, 167, 195, 808
AsuHPI GGTGA 2 cut(s) 233, 625
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 3 cut(s) 269, 374, 652
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 470
BbvI GCAGC 3 cut(s) 438, 456, 483
BccI CCATC 5 cut(s) 439, 679, 707, 764, 809
BceAI ACGGC 4 cut(s) 101, 293, 523, 600
BcgI CGANNNNNNTGC 4 cut(s) 468, 478, 502, 512
BcnI CCSGG 4 cut(s) 140, 167, 195, 808
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 3 cut(s) 130, 273, 378
BfuAI ACCTGC 1 cut(s) 354
BisI GCNGC 7 cut(s) 150, 273, 276, 352, 452, 470, 497
BlsI GCNGC 7 cut(s) 151, 274, 277, 353, 453, 471, 498
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 4 cut(s) 140, 167, 195, 808
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgT120I GGNCC 3 cut(s) 151, 164, 197
BmiI GGNNCC 6 cut(s) 217, 271, 376, 654, 690, 718
BmrFI CCNGG 4 cut(s) 140, 167, 195, 808
BmsI GCATC 4 cut(s) 287, 327, 597, 697
BpiI GAAGAC 1 cut(s) 470
BplI GAGNNNNNCTC 4 cut(s) 116, 148, 626, 658
BpmI CTGGAG 1 cut(s) 30
BpuMI CCSGG 4 cut(s) 140, 167, 195, 808
BsaHI GRCGYC 7 cut(s) 183, 240, 270, 363, 375, 485, 791
BsaJI CCNNGG 1 cut(s) 378
BsaWI WCCGGW 3 cut(s) 218, 281, 368
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 5 cut(s) 145, 266, 430, 610, 631
Bse118I RCCGGY 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 278, 318
BseLI CCNNNNNNNGG 5 cut(s) 145, 266, 430, 610, 631
BseMII CTCAG 1 cut(s) 268
BseXI GCAGC 3 cut(s) 438, 456, 483
BseYI CCCAGC 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 335, 351
BshFI GGCC 6 cut(s) 116, 152, 165, 198, 359, 593
BshNI GGYRCC 3 cut(s) 269, 374, 652
BsiSI CCGG 9 cut(s) 140, 162, 167, 195, 219, 282, 369, 625, 807
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 5 cut(s) 145, 266, 430, 610, 631
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 6 cut(s) 116, 152, 165, 198, 359, 593
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 281
Bsp143I GATC 7 cut(s) 60, 294, 301, 402, 439, 600, 688
BspANI GGCC 6 cut(s) 116, 152, 165, 198, 359, 593
BspCNI CTCAG 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 281
BspFNI CGCG 2 cut(s) 335, 351
BspLI GGNNCC 6 cut(s) 217, 271, 376, 654, 690, 718
BspMI ACCTGC 1 cut(s) 354
BspPI GGATC 4 cut(s) 296, 595, 683, 696
BspT107I GGYRCC 3 cut(s) 269, 374, 652
BsrBI CCGCTC 1 cut(s) 202
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 7 cut(s) 60, 294, 301, 402, 439, 600, 688
BssNI GRCGYC 7 cut(s) 183, 240, 270, 363, 375, 485, 791
Bst4CI ACNGT 1 cut(s) 652
Bst6I CTCTTC 1 cut(s) 649
BstACI GRCGYC 7 cut(s) 183, 240, 270, 363, 375, 485, 791
BstC8I GCNNGC 7 cut(s) 86, 90, 99, 159, 163, 200, 518
BstDEI CTNAG 2 cut(s) 254, 798
BstF5I GGATG 2 cut(s) 278, 318
BstFNI CGCG 2 cut(s) 335, 351
BstH2I RGCGCY 3 cut(s) 130, 273, 378
BstHHI GCGC 6 cut(s) 84, 129, 272, 337, 351, 377
BstKTI GATC 7 cut(s) 63, 297, 304, 405, 442, 603, 691
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 7 cut(s) 60, 294, 301, 402, 439, 600, 688
BstSCI CCNGG 4 cut(s) 138, 165, 193, 806
BstUI CGCG 2 cut(s) 335, 351
BstV1I GCAGC 3 cut(s) 438, 456, 483
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 673
BstYI RGATCY 1 cut(s) 688
BsuRI GGCC 6 cut(s) 116, 152, 165, 198, 359, 593
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 2 cut(s) 278, 318
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 486
BveI ACCTGC 1 cut(s) 354
Cac8I GCNNGC 7 cut(s) 86, 90, 99, 159, 163, 200, 518
CaiI CAGNNNCTG 1 cut(s) 610
CfoI GCGC 6 cut(s) 84, 129, 272, 337, 351, 377
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 3 cut(s) 151, 164, 197
CseI GACGC 5 cut(s) 191, 248, 371, 475, 799
Csp6I GTAC 1 cut(s) 226
CviAII CATG 4 cut(s) 78, 338, 721, 812
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 254, 798
DinI GGCGCC 2 cut(s) 271, 376
DpnI GATC 7 cut(s) 62, 296, 303, 404, 441, 602, 690
DpnII GATC 7 cut(s) 60, 294, 301, 402, 439, 600, 688
DrdI GACNNNNNNGTC 1 cut(s) 472
DriI GACNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 649
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 649
EciI GGCGGA 2 cut(s) 653, 692
Eco147I AGGCCT 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 195
Eco32I GATATC 1 cut(s) 547
Eco57I CTGAAG 3 cut(s) 311, 482, 506
EcoRV GATATC 1 cut(s) 547
EcoT38I GRGCYC 1 cut(s) 195
EgeI GGCGCC 2 cut(s) 271, 376
EheI GGCGCC 2 cut(s) 271, 376
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 4 cut(s) 81, 341, 724, 815
FaiI YATR 7 cut(s) 79, 339, 569, 722, 728, 758, 813
FaqI GGGAC 1 cut(s) 449
FatI CATG 4 cut(s) 77, 337, 720, 811
FauI CCCGC 3 cut(s) 166, 207, 313
Fnu4HI GCNGC 7 cut(s) 150, 273, 276, 352, 452, 470, 497
FokI GGATG 2 cut(s) 265, 305
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 7 cut(s) 150, 273, 276, 352, 452, 470, 497
FspBI CTAG 1 cut(s) 53
GlaI GCGC 6 cut(s) 83, 128, 271, 336, 350, 376
GluI GCNGC 7 cut(s) 150, 273, 276, 352, 452, 470, 497
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 30
HaeII RGCGCY 3 cut(s) 130, 273, 378
HaeIII GGCC 6 cut(s) 116, 152, 165, 198, 359, 593
HapII CCGG 9 cut(s) 140, 162, 167, 195, 219, 282, 369, 625, 807
HgaI GACGC 5 cut(s) 191, 248, 371, 475, 799
HhaI GCGC 6 cut(s) 84, 129, 272, 337, 351, 377
Hin1I GRCGYC 7 cut(s) 183, 240, 270, 363, 375, 485, 791
Hin1II CATG 4 cut(s) 81, 341, 724, 815
Hin6I GCGC 6 cut(s) 82, 127, 270, 335, 349, 375
HinP1I GCGC 6 cut(s) 82, 127, 270, 335, 349, 375
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 9 cut(s) 20, 170, 245, 250, 407, 502, 574, 641, 781
HpaII CCGG 9 cut(s) 140, 162, 167, 195, 219, 282, 369, 625, 807
HphI GGTGA 2 cut(s) 233, 625
Hpy188III TCNNGA 4 cut(s) 67, 282, 322, 604
Hpy99I CGWCG 9 cut(s) 185, 212, 242, 314, 365, 490, 586, 790, 793
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 3 cut(s) 111, 318, 736
HpyF3I CTNAG 2 cut(s) 254, 798
HpySE526I ACGT 1 cut(s) 485
Hsp92I GRCGYC 7 cut(s) 183, 240, 270, 363, 375, 485, 791
Hsp92II CATG 4 cut(s) 81, 341, 724, 815
HspAI GCGC 6 cut(s) 82, 127, 270, 335, 349, 375
KasI GGCGCC 2 cut(s) 269, 374
Kpn2I TCCGGA 1 cut(s) 281
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 7 cut(s) 60, 294, 301, 402, 439, 600, 688
LmnI GCTCC 4 cut(s) 207, 221, 448, 722
Lsp1109I GCAGC 3 cut(s) 438, 456, 483
LweI GCATC 4 cut(s) 287, 327, 597, 697
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 481
MalI GATC 7 cut(s) 62, 296, 303, 404, 441, 602, 690
MbiI CCGCTC 1 cut(s) 202
MboI GATC 7 cut(s) 60, 294, 301, 402, 439, 600, 688
MboII GAAGA 4 cut(s) 70, 304, 475, 636
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 1 cut(s) 195
MluCI AATT 3 cut(s) 398, 680, 753
Mly113I GGCGCC 2 cut(s) 270, 375
MlyI GAGTC 3 cut(s) 254, 416, 635
MmeI TCCRAC 3 cut(s) 55, 159, 809
MroI TCCGGA 1 cut(s) 281
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 1 cut(s) 660
MslI CAYNNNNRTG 2 cut(s) 671, 725
MspI CCGG 9 cut(s) 140, 162, 167, 195, 219, 282, 369, 625, 807
MspR9I CCNGG 4 cut(s) 140, 167, 195, 808
Mva1269I GAATGC 1 cut(s) 113
MvnI CGCG 2 cut(s) 335, 351
NaeI GCCGGC 1 cut(s) 163
NarI GGCGCC 2 cut(s) 270, 375
NciI CCSGG 4 cut(s) 140, 167, 195, 808
NdeII GATC 7 cut(s) 60, 294, 301, 402, 439, 600, 688
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 81, 341, 724, 815
NlaIV GGNNCC 6 cut(s) 217, 271, 376, 654, 690, 718
NmeAIII GCCGAG 2 cut(s) 268, 403
NmuCI GTSAC 1 cut(s) 481
PceI AGGCCT 1 cut(s) 593
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 113
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 6 cut(s) 20, 170, 250, 502, 574, 781
PflMI CCANNNNNTGG 2 cut(s) 430, 610
PkrI GCNGC 7 cut(s) 151, 274, 277, 353, 453, 471, 498
PleI GAGTC 3 cut(s) 253, 415, 635
PluTI GGCGCC 2 cut(s) 273, 378
PpsI GAGTC 3 cut(s) 253, 415, 635
PshBI ATTAAT 1 cut(s) 660
PspFI CCCAGC 1 cut(s) 153
PspN4I GGNNCC 6 cut(s) 217, 271, 376, 654, 690, 718
PspPI GGNCC 3 cut(s) 151, 164, 197
PstNI CAGNNNCTG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 688
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 2 cut(s) 671, 725
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 7 cut(s) 150, 273, 276, 352, 452, 470, 497
Sau3AI GATC 7 cut(s) 60, 294, 301, 402, 439, 600, 688
Sau96I GGNCC 3 cut(s) 151, 164, 197
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 3 cut(s) 254, 416, 635
ScrFI CCNGG 4 cut(s) 140, 167, 195, 808
SduI GDGCHC 1 cut(s) 195
SetI ASST 7 cut(s) 39, 99, 330, 348, 453, 488, 804
SfaNI GCATC 4 cut(s) 287, 327, 597, 697
SfoI GGCGCC 2 cut(s) 271, 376
SmiMI CAYNNNNRTG 2 cut(s) 671, 725
Sse9I AATT 3 cut(s) 398, 680, 753
SseBI AGGCCT 1 cut(s) 593
SspDI GGCGCC 2 cut(s) 269, 374
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 1 cut(s) 593
StyD4I CCNGG 4 cut(s) 138, 165, 193, 806
TaaI ACNGT 1 cut(s) 652
TaiI ACGT 1 cut(s) 488
TaqI TCGA 5 cut(s) 123, 248, 312, 405, 488
TasI AATT 3 cut(s) 398, 680, 753
TatI WGTACW 1 cut(s) 225
TauI GCSGC 4 cut(s) 152, 275, 278, 354
TfiI GAWTC 6 cut(s) 20, 170, 250, 502, 574, 781
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 3 cut(s) 451, 469, 496
Tsp45I GTSAC 1 cut(s) 481
TspGWI ACGGA 2 cut(s) 225, 400
TspRI CASTG 1 cut(s) 486
Van91I CCANNNNNTGG 2 cut(s) 430, 610
VspI ATTAAT 1 cut(s) 660
XspI CTAG 1 cut(s) 53
ZraI GACGTC 1 cut(s) 486
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.