Rmu_sc0002313.1_g000001

PHD-zinc-finger like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002313.1
OG0004120
Physical Location & Seq
Forward (+)
1 .. 7376
7376 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3093 bp
aacatatgcaaggtgaagtggggcgcttgtgttcgatgcagtcatggtgcttgcagaacttccttccatccaatgtgtgcgagagaggcaagacaaagaatggaaatttgggcaaaatatgggctcaataatgttgaattgaaggctttctgctcaaagcattcagaagtaccaaataacagcaacactgaaccagaggatccttctgtctccattgacaagaattcaaatatctctgacagttctcatgtgacatcatcaccaaaaaaattaaacaagttgaaaattggcggtagaaatggtgataatgttgcagtcagtgttgagacttcagataattctgataaattcagtgatagcagatcacaggagatacctatgaatgataggggtaaattcgagaggagctgtgaggatgtcaatgcatctgggaaccttaaccttacccctattttacagaagctgattgattgtggaaaagttgacgtgaaggatgtggcgttggagattggcgtctcacccgattctttatctgcttcacttgctgatgatagcgtggtccctgatgtgcaatgcagaataattaaatggcttaaagaccatacctacttggatctaatgcagaaaaatgtaaaaacaaacttaagaccgtcatttgcatcattggccgagtttggaggttctgatgctccattatcagagtctggtatgtcagatccagtagctgttaaatcagtacccccacggaggagaacaaaaggtggtgttaggattttaaaggacaacaaagttcgtagctcatcagagcaggccttttgtgacaatgggattccactggacaagattaaattagataaaactatcagtgaaggaccaaaagatttgaaagaagagtccgtcagtgatgttgttgagaagaatatgacggtgctcaatgggttacaagattctttgccgacacattcacctgaaatggaaggttattcaactaagcccttaaattgcagccttttgcaaaaaggtcaagaagtggtgactattactcctttgcagaccaactcggtgattgcaaatgtagatccatcgttttcagttgaaaaaccagttcctgaaagcaagaaatcgggggcagaagctcctagttcttatgtccacccgcctatgcagaagacattgtcacagatggagaacggggtgtctctaaagaatccaatacatggttcaagtcaaggagaagtctctcgtgtggaggcatcttcccatgcaagtgtttgctgtaatcatcaaaatacacatccaaaatgttatgatacgatttgtaaaactgatgagaggaatttagaacagttggctaaggctcgtaaactgggagttctagaaatgtctccagaagatgaagtggaaggagaactcatttattatcagcataggttgcaaaacaatataactgcgagaaagcattatactgatgttttgatacgtaatgttgctaagagtctgccgaaagagattgatgcagcacggaatcagaagtgggatgctgtgctggttaaccaatatctttgcgagcttcgagaggcaaagaagcaaggtaggaaggagagacggcataaggaagcacaggctgttttagcagctgcaactgctgcagctgctgcctcttctaggatttcatcatttaggaaagatgtcgttgatgaacacccccatcaggagaatgtggtgaagctgagcactttcagtgggaggtccagcttttcctcacagatgataccacgggcaaaagagacatttccaagggtggctgtccctagagtttctgtggaaaagcactctggtgcagttaattcaggctcagatatctctaaagaacatcctaggtcatgtgatatctgcagacgttctgagacgatgttaaacccgattttagtctgttccagttgcaaggttgctgttcacttggattgctatcgtagtgctagagaatctacaggtccatggtactgtgaattatgtgaagacaaagctactgccaatgtttgggagaaagagcatttaactgcagaatgtggtttatgcggtgggaaaactggtgcttttaggaaatcctctgatggtcaatgggtccatgccttctgtgctgagtgggtctttgagtcaacattcaaaaggggacaagtatcactgattgatggaatggacacagtttcaaagggccttgatttctgttatatctgccgacgcaaatttggtgtctgcataaagtgcagctatggccattgtcaggcaacatttcatccctcgtgtggtagaagttctgatttttatatgaatgtaaaaactctcagtggcaagcagcaacacaaggcatactgtgagaggcatagccttgagcagagggtgaaggctgatacacaaaaacatggaatggaggaattaaagaacctctatacaataagggctgagctggagagattacgccttatttgcgaaagaattatcaaacgggaaaaagtaaagagggaattactcatttgttcacatgaccttctcgctgtgaaaagagatcatgttgcccgttccgtgcttgttaacagtcctttcttgctaccggatgctagttctgaatcagcaacaacttctcttaaagcgcagacagatgattacaggtcatgcagtgagacattccaaagatcagatgatgtgactgtagatagtacaatttctgttaggcacaggactagagttcctataactattgataacgaccaaaggacagatgatgacagctccacatcccaaaatcaatttacccacaatctttcggataggatgcaattttctgagaaacagattccattcagaccttctgccgcgaattgtaatctttcagaagatggtggatacaggtcaaaatctaagaagcatgccgagatgttttcgaaagaactggtgatgacatcagatcaggcatcggtgaaaaatatgctattacccaaaggatatgcatatgtacctgctgattgcattccaaatgagaagcaggccaaccaggatacttgttctggtgaacgaccagaaggagatgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000785 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005886 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008289 GO:0008757 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009987 GO:0010093 GO:0010314 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0034968 GO:0035091 GO:0036211 GO:0042054 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048449 GO:0048580 GO:0048608 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051568 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901981 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD_2 zf-HC5HC2H_2

Protein Analysis

1030

Amino Acids

114.52

Weight (kDa)

8.23

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HC5HC2H_2 PF13832 2 - 54 1.9e-07 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 2 - 55 8.3e-10 PHD-like zinc-binding domain
PHD_2 PF13831 640 - 673 6.4e-10 PHD-finger
zf-HC5HC2H_2 PF13832 689 - 795 4.2e-19 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 710 - 796 2.6e-12 PHD-like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 3025
AccB7I CCANNNNNTGG 2 cut(s) 1217, 2040
AccII CGCG 1 cut(s) 2876
AciI CCGC 4 cut(s) 291, 1157, 2079, 2874
AclWI GGATC 5 cut(s) 194, 207, 621, 710, 1073
AcoI YGGCCR 2 cut(s) 666, 2275
AcsI RAATTY 6 cut(s) 105, 223, 347, 395, 1336, 2246
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 5 cut(s) 171, 738, 2003, 2719, 3015
AfiI CCNNNNNNNGG 7 cut(s) 747, 1217, 1665, 1711, 2040, 2284, 2306
AflII CTTAAG 1 cut(s) 643
AjiI CACGTC 1 cut(s) 487
AjnI CCWGG 1 cut(s) 3051
AjuI GAANNNNNNNTTGG 4 cut(s) 91, 123, 1204, 1236
AleI CACNNNNGTG 1 cut(s) 1836
Alw21I GWGCWC 2 cut(s) 933, 1736
AlwI GGATC 5 cut(s) 194, 207, 621, 710, 1073
AlwNI CAGNNNCTG 5 cut(s) 463, 704, 725, 1109, 1655
AoxI GGCC 5 cut(s) 666, 810, 2215, 2275, 3045
ApoI RAATTY 6 cut(s) 105, 223, 347, 395, 1336, 2246
ArsI GACNNNNNNTTYG 2 cut(s) 2238, 2270
Asp700I GAANNNNTTC 1 cut(s) 146
AspA2I CCTAGG 1 cut(s) 1877
AspLEI GCGC 2 cut(s) 26, 2653
AspS9I GGNCC 6 cut(s) 559, 872, 1749, 1994, 2125, 2215
AsuII TTCGAA 1 cut(s) 2942
AvaII GGWCC 5 cut(s) 559, 872, 1749, 1994, 2125
AvrII CCTAGG 1 cut(s) 1877
BalI TGGCCA 1 cut(s) 2277
BamHI GGATCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 2 cut(s) 1242, 2302
BbsI GAAGAC 2 cut(s) 1175, 2025
Bbv12I GWGCWC 2 cut(s) 933, 1736
BccI CCATC 8 cut(s) 75, 1090, 1177, 1716, 2108, 2186, 2891, 3080
BceAI ACGGC 1 cut(s) 1622
BciT130I CCWGG 1 cut(s) 3053
BciVI GTATCC 2 cut(s) 2897, 3049
BfaI CTAG 8 cut(s) 1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
BfmI CTRYAG 5 cut(s) 1647, 1894, 1989, 2061, 2709
BfoI RGCGCY 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 643
BfuAI ACCTGC 1 cut(s) 3025
BfuI GTATCC 2 cut(s) 2897, 3049
BlnI CCTAGG 1 cut(s) 1877
BlpI GCTNAGC 2 cut(s) 1730, 2463
Bme1390I CCNGG 1 cut(s) 3053
Bme18I GGWCC 5 cut(s) 559, 872, 1749, 1994, 2125
BmgBI CACGTC 1 cut(s) 487
BmgT120I GGNCC 6 cut(s) 559, 872, 1749, 1994, 2125, 2215
BmiI GGNNCC 4 cut(s) 201, 434, 561, 2126
BmrFI CCNGG 1 cut(s) 3053
BmrI ACTGGG 1 cut(s) 1376
BmuI ACTGGG 1 cut(s) 1376
BpiI GAAGAC 2 cut(s) 1175, 2025
BpmI CTGGAG 2 cut(s) 1371, 2489
Bpu10I CCTNAGC 1 cut(s) 1353
Bpu1102I GCTNAGC 2 cut(s) 1730, 2463
Bpu14I TTCGAA 1 cut(s) 2942
BpuEI CTTGAG 1 cut(s) 2411
BsaAI YACGTR 1 cut(s) 1481
BsaBI GATNNNNATC 1 cut(s) 1968
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 5 cut(s) 743, 1775, 1796, 1877, 1997
BsaWI WCCGGW 1 cut(s) 2611
BsaXI ACNNNNNCTCC 2 cut(s) 1027, 1057
Bsc4I CCNNNNNNNGG 7 cut(s) 747, 1217, 1665, 1711, 2040, 2284, 2306
Bse1I ACTGG 7 cut(s) 719, 840, 1103, 1371, 1938, 2095, 2955
Bse3DI GCAATG 1 cut(s) 578
Bse8I GATNNNNATC 1 cut(s) 1968
BseBI CCWGG 1 cut(s) 3053
BseDI CCNNGG 5 cut(s) 743, 1775, 1796, 1877, 1997
BseJI GATNNNNATC 1 cut(s) 1968
BseLI CCNNNNNNNGG 7 cut(s) 747, 1217, 1665, 1711, 2040, 2284, 2306
BseMI GCAATG 1 cut(s) 578
BseMII CTCAG 7 cut(s) 1721, 1869, 1896, 2133, 2359, 2454, 2835
BseNI ACTGG 7 cut(s) 719, 840, 1103, 1371, 1938, 2095, 2955
BseRI GAGGAG 2 cut(s) 418, 763
BsgI GTGCAG 2 cut(s) 1860, 2287
Bsh1236I CGCG 1 cut(s) 2876
BshFI GGCC 5 cut(s) 668, 812, 2217, 2277, 3047
BsiHKAI GWGCWC 2 cut(s) 933, 1736
BsiSI CCGG 1 cut(s) 2612
BslFI GGGAC 3 cut(s) 545, 1793, 2187
BslI CCNNNNNNNGG 7 cut(s) 747, 1217, 1665, 1711, 2040, 2284, 2306
BsmBI CGTCTC 3 cut(s) 520, 1597, 1901
BsmFI GGGAC 3 cut(s) 545, 1793, 2187
BsmI GAATGC 2 cut(s) 160, 3027
BsnI GGCC 5 cut(s) 668, 812, 2217, 2277, 3047
Bsp119I TTCGAA 1 cut(s) 2942
Bsp1286I GDGCHC 3 cut(s) 126, 933, 1736
Bsp143I GATC 8 cut(s) 199, 362, 613, 715, 1078, 2566, 2693, 2965
Bsp1720I GCTNAGC 2 cut(s) 1730, 2463
Bsp19I CCATGG 1 cut(s) 1997
BspACI CCGC 4 cut(s) 291, 1157, 2079, 2874
BspANI GGCC 5 cut(s) 668, 812, 2217, 2277, 3047
BspCNI CTCAG 7 cut(s) 1722, 1868, 1897, 2134, 2358, 2455, 2836
BspFNI CGCG 1 cut(s) 2876
BspLI GGNNCC 4 cut(s) 201, 434, 561, 2126
BspMAI CTGCAG 3 cut(s) 1651, 1898, 2065
BspMI ACCTGC 1 cut(s) 3025
BspPI GGATC 5 cut(s) 194, 207, 621, 710, 1073
BspT104I TTCGAA 1 cut(s) 2942
BspTI CTTAAG 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 578
BsrI ACTGG 7 cut(s) 719, 840, 1103, 1371, 1938, 2095, 2955
BssECI CCNNGG 5 cut(s) 743, 1775, 1796, 1877, 1997
BssMI GATC 8 cut(s) 199, 362, 613, 715, 1078, 2566, 2693, 2965
BssNI GRCGYC 1 cut(s) 513
BssSI CACGAG 2 cut(s) 1242, 2302
BssT1I CCWWGG 3 cut(s) 1796, 1877, 1997
Bst2BI CACGAG 2 cut(s) 1242, 2302
Bst2UI CCWGG 1 cut(s) 3053
Bst4CI ACNGT 9 cut(s) 242, 651, 928, 1347, 2006, 2206, 2375, 2597, 2710
Bst6I CTCTTC 2 cut(s) 885, 1666
BstACI GRCGYC 1 cut(s) 513
BstAFI CTTAAG 1 cut(s) 643
BstAPI GCANNNNNTGC 4 cut(s) 1432, 1646, 1655, 2265
BstBAI YACGTR 1 cut(s) 1481
BstBI TTCGAA 1 cut(s) 2942
BstC8I GCNNGC 6 cut(s) 52, 810, 1568, 2354, 2928, 3045
BstDSI CCRYGG 3 cut(s) 743, 1775, 1997
BstENI CCTNNNNNAGG 1 cut(s) 1663
BstFNI CGCG 1 cut(s) 2876
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 2653
BstKTI GATC 8 cut(s) 202, 365, 616, 718, 1081, 2569, 2696, 2968
BstMBI GATC 8 cut(s) 199, 362, 613, 715, 1078, 2566, 2693, 2965
BstNI CCWGG 1 cut(s) 3053
BstNSI RCATGY 1 cut(s) 2930
BstSCI CCNGG 1 cut(s) 3051
BstSFI CTRYAG 5 cut(s) 1647, 1894, 1989, 2061, 2709
BstSNI TACGTA 1 cut(s) 1481
BstUI CGCG 1 cut(s) 2876
BstV2I GAAGAC 2 cut(s) 1175, 2025
BstX2I RGATCY 4 cut(s) 199, 613, 715, 1078
BstYI RGATCY 4 cut(s) 199, 613, 715, 1078
BsuI GTATCC 2 cut(s) 2897, 3049
BsuRI GGCC 5 cut(s) 668, 812, 2217, 2277, 3047
BtgI CCRYGG 3 cut(s) 743, 1775, 1997
BtrI CACGTC 1 cut(s) 487
BtsI GCAGTG 1 cut(s) 2683
BveI ACCTGC 1 cut(s) 3025
Cac8I GCNNGC 6 cut(s) 52, 810, 1568, 2354, 2928, 3045
CaiI CAGNNNCTG 5 cut(s) 463, 704, 725, 1109, 1655
CfoI GCGC 2 cut(s) 26, 2653
Cfr13I GGNCC 6 cut(s) 559, 872, 1749, 1994, 2125, 2215
CseI GACGC 2 cut(s) 502, 2250
Csp6I GTAC 5 cut(s) 170, 737, 2002, 2718, 3014
CviQI GTAC 5 cut(s) 170, 737, 2002, 2718, 3014
DpnI GATC 8 cut(s) 201, 364, 615, 717, 1080, 2568, 2695, 2967
DpnII GATC 8 cut(s) 199, 362, 613, 715, 1078, 2566, 2693, 2965
DraI TTTAAA 1 cut(s) 777
EaeI YGGCCR 2 cut(s) 666, 2275
Eam1104I CTCTTC 2 cut(s) 885, 1666
EarI CTCTTC 2 cut(s) 885, 1666
Eco105I TACGTA 1 cut(s) 1481
Eco130I CCWWGG 3 cut(s) 1796, 1877, 1997
Eco147I AGGCCT 1 cut(s) 812
Eco24I GRGCYC 1 cut(s) 126
Eco32I GATATC 2 cut(s) 1861, 1891
Eco47I GGWCC 5 cut(s) 559, 872, 1749, 1994, 2125
Eco57I CTGAAG 1 cut(s) 315
EcoNI CCTNNNNNAGG 1 cut(s) 1663
EcoO109I RGGNCCY 1 cut(s) 2215
EcoRI GAATTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 3051
EcoRV GATATC 2 cut(s) 1861, 1891
EcoT14I CCWWGG 3 cut(s) 1796, 1877, 1997
EcoT22I ATGCAT 2 cut(s) 427, 3010
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 3 cut(s) 1796, 1877, 1997
Esp3I CGTCTC 3 cut(s) 520, 1597, 1901
FaqI GGGAC 3 cut(s) 545, 1793, 2187
FauI CCCGC 1 cut(s) 1164
FauNDI CATATG 2 cut(s) 5, 3010
FriOI GRGCYC 1 cut(s) 126
FspBI CTAG 8 cut(s) 1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
GlaI GCGC 2 cut(s) 25, 2652
GsuI CTGGAG 2 cut(s) 1371, 2489
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 5 cut(s) 668, 812, 2217, 2277, 3047
HapII CCGG 1 cut(s) 2612
HgaI GACGC 2 cut(s) 502, 2250
HhaI GCGC 2 cut(s) 26, 2653
Hin1I GRCGYC 1 cut(s) 513
Hin6I GCGC 2 cut(s) 24, 2651
HinP1I GCGC 2 cut(s) 24, 2651
HincII GTYRAC 4 cut(s) 484, 1552, 2160, 2593
HindII GTYRAC 4 cut(s) 484, 1552, 2160, 2593
HpaI GTTAAC 2 cut(s) 1552, 2593
HpaII CCGG 1 cut(s) 2612
Hpy166II GTNNAC 9 cut(s) 484, 1153, 1364, 1552, 1957, 2160, 2540, 2593, 3071
Hpy188III TCNNGA 7 cut(s) 400, 1025, 1109, 1376, 1388, 1574, 1712
Hpy8I GTNNAC 9 cut(s) 484, 1153, 1364, 1552, 1957, 2160, 2540, 2593, 3071
Hpy99I CGWCG 1 cut(s) 2244
HpyCH4III ACNGT 9 cut(s) 242, 651, 928, 1347, 2006, 2206, 2375, 2597, 2710
HpyCH4IV ACGT 3 cut(s) 486, 1480, 1900
HpySE526I ACGT 3 cut(s) 486, 1480, 1900
Hsp92I GRCGYC 1 cut(s) 513
HspAI GCGC 2 cut(s) 24, 2651
KspAI GTTAAC 2 cut(s) 1552, 2593
Kzo9I GATC 8 cut(s) 199, 362, 613, 715, 1078, 2566, 2693, 2965
LmnI GCTCC 4 cut(s) 405, 694, 1141, 2795
MaeI CTAG 8 cut(s) 1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
MaeII ACGT 3 cut(s) 486, 1480, 1900
MaeIII GTNAC 6 cut(s) 250, 818, 939, 1033, 1176, 2704
MalI GATC 8 cut(s) 201, 364, 615, 717, 1080, 2568, 2695, 2967
MboI GATC 8 cut(s) 199, 362, 613, 715, 1078, 2566, 2693, 2965
MboII GAAGA 8 cut(s) 902, 928, 1180, 1248, 1403, 1653, 2030, 2906
MflI RGATCY 4 cut(s) 199, 613, 715, 1078
MhlI GDGCHC 3 cut(s) 126, 933, 1736
MlsI TGGCCA 1 cut(s) 2277
MluNI TGGCCA 1 cut(s) 2277
MlyI GAGTC 4 cut(s) 710, 902, 1504, 2165
MmeI TCCRAC 1 cut(s) 483
Mox20I TGGCCA 1 cut(s) 2277
Mph1103I ATGCAT 2 cut(s) 427, 3010
MroXI GAANNNNTTC 1 cut(s) 146
MscI TGGCCA 1 cut(s) 2277
MslI CAYNNNNRTG 2 cut(s) 1266, 1836
Msp20I TGGCCA 1 cut(s) 2277
MspA1I CMGCKG 2 cut(s) 1637, 1652
MspCI CTTAAG 1 cut(s) 643
MspI CCGG 1 cut(s) 2612
MspR9I CCNGG 1 cut(s) 3053
Mva1269I GAATGC 2 cut(s) 160, 3027
MvaI CCWGG 1 cut(s) 3053
MvnI CGCG 1 cut(s) 2876
NcoI CCATGG 1 cut(s) 1997
NdeI CATATG 2 cut(s) 5, 3010
NdeII GATC 8 cut(s) 199, 362, 613, 715, 1078, 2566, 2693, 2965
NlaIV GGNNCC 4 cut(s) 201, 434, 561, 2126
NmeAIII GCCGAG 2 cut(s) 694, 2956
NmuCI GTSAC 5 cut(s) 250, 818, 1033, 1176, 2704
NsiI ATGCAT 2 cut(s) 427, 3010
NspI RCATGY 1 cut(s) 2930
NspV TTCGAA 1 cut(s) 2942
OliI CACNNNNGTG 1 cut(s) 1836
PaeI GCATGC 1 cut(s) 2930
PceI AGGCCT 1 cut(s) 812
PctI GAATGC 2 cut(s) 160, 3027
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 8 cut(s) 524, 829, 947, 1207, 1525, 1985, 2627, 2854
PflFI GACNNNGTC 1 cut(s) 1174
PflMI CCANNNNNTGG 2 cut(s) 1217, 2040
PleI GAGTC 4 cut(s) 709, 901, 1503, 2164
PpsI GAGTC 4 cut(s) 709, 901, 1503, 2164
Ppu21I YACGTR 1 cut(s) 1481
Psp6I CCWGG 1 cut(s) 3051
PspGI CCWGG 1 cut(s) 3051
PspN4I GGNNCC 4 cut(s) 201, 434, 561, 2126
PspPI GGNCC 6 cut(s) 559, 872, 1749, 1994, 2125, 2215
PstI CTGCAG 3 cut(s) 1651, 1898, 2065
PstNI CAGNNNCTG 5 cut(s) 463, 704, 725, 1109, 1655
PsuI RGATCY 4 cut(s) 199, 613, 715, 1078
PsyI GACNNNGTC 1 cut(s) 1174
PvuII CAGCTG 2 cut(s) 1637, 1652
RsaI GTAC 5 cut(s) 171, 738, 2003, 2719, 3015
RsaNI GTAC 5 cut(s) 170, 737, 2002, 2718, 3014
RseI CAYNNNNRTG 2 cut(s) 1266, 1836
Sau3AI GATC 8 cut(s) 199, 362, 613, 715, 1078, 2566, 2693, 2965
Sau96I GGNCC 6 cut(s) 559, 872, 1749, 1994, 2125, 2215
SchI GAGTC 4 cut(s) 710, 902, 1504, 2165
ScrFI CCNGG 1 cut(s) 3053
SduI GDGCHC 3 cut(s) 126, 933, 1736
SfcI CTRYAG 5 cut(s) 1647, 1894, 1989, 2061, 2709
SfuI TTCGAA 1 cut(s) 2942
SinI GGWCC 5 cut(s) 559, 872, 1749, 1994, 2125
SmiMI CAYNNNNRTG 2 cut(s) 1266, 1836
SmlI CTYRAG 2 cut(s) 643, 2390
SmoI CTYRAG 2 cut(s) 643, 2390
SnaBI TACGTA 1 cut(s) 1481
SphI GCATGC 1 cut(s) 2930
SseBI AGGCCT 1 cut(s) 812
SsiI CCGC 4 cut(s) 291, 1157, 2079, 2874
SspMI CTAG 8 cut(s) 1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
StuI AGGCCT 1 cut(s) 812
StyD4I CCNGG 1 cut(s) 3051
StyI CCWWGG 3 cut(s) 1796, 1877, 1997
TaaI ACNGT 9 cut(s) 242, 651, 928, 1347, 2006, 2206, 2375, 2597, 2710
TaiI ACGT 3 cut(s) 489, 1483, 1903
TaqI TCGA 4 cut(s) 34, 399, 1573, 2942
TatI WGTACW 1 cut(s) 2717
TauI GCSGC 1 cut(s) 2876
TfiI GAWTC 8 cut(s) 524, 829, 947, 1207, 1525, 1985, 2627, 2854
TseFI GTSAC 5 cut(s) 250, 818, 1033, 1176, 2704
Tsp45I GTSAC 5 cut(s) 250, 818, 1033, 1176, 2704
TspDTI ATGAA 6 cut(s) 395, 1410, 1662, 1713, 2285, 2345
TspGWI ACGGA 4 cut(s) 760, 886, 1537, 2572
Tth111I GACNNNGTC 1 cut(s) 1174
Van91I CCANNNNNTGG 2 cut(s) 1217, 2040
Vha464I CTTAAG 1 cut(s) 643
VpaK11BI GGWCC 5 cut(s) 559, 872, 1749, 1994, 2125
XagI CCTNNNNNAGG 1 cut(s) 1663
XapI RAATTY 6 cut(s) 105, 223, 347, 395, 1336, 2246
XbaI TCTAGA 1 cut(s) 1375
XceI RCATGY 1 cut(s) 2930
XmaJI CCTAGG 1 cut(s) 1877
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 8 cut(s) 1140, 1376, 1665, 1812, 1878, 1980, 2619, 2742
Zsp2I ATGCAT 2 cut(s) 427, 3010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.