Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002454.1

Orthogroup ID

OG0002205

Physical Location & Seq

Genomic Coordinates Forward (+)

25609 .. 29064

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ctgcccactgctgggtttagggcgacctgggtgaagggagacccacgacgtcgtttcgtttatctttggaaaacggcgtcgtttgccttagcagctcttgttttcgaacgcttcaccacggcccaatctctacacggagagagaagaatgagggggagaagctacagttacagcccttcaccgccgagaggttacagcagacgacgtcgtagccctagccctagaggccgctatggaggaggccgtgctagggatcttcccaccagtcttttggttcgcaatcttcgccatgactgccggcctgaggatttacgtgggccgttcgggcaatttggtcccctcaaggacatctacttgcctagggattattatactggatttgaagaaacttggtttgaattcattgagaagaagttggaagtctcgaagaatttcaactcaattttatctatggcaccaacaagggatccacgtggctttggatttgttcagtttgtagaccctgctgatgctgccgatgccaagcaccatatggatgggcaaattcttcttgggcgggaattgacagttgtatttgctgaggagaataggaagaaaccctcggaaatgaaggcaagagaccggggtcagtcatatgatagcaggcggagcatttattctcgttcaccacgctatgctcgaacctactctcgaagtccaggttattattcaccctcccctaggagaaggcggtactcaaggtcgatttcaccaagaggtaggaggtaccgggagcgatcatactcaaggtctccctatggttcaaggagccgtagccgaagtcggaggtatagcaggagccgcagtcgaagcctggactactctcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

289

Amino Acids

33.98

Weight (kDa)

11.21

Isoelectric Point (pI)

91.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	146 - 188	1e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT1G55310 AT3G13570
fragaria_vesca	FvH4_3g45331 FvH4_3g45331 FvH4_6g21490
malus_domestica	MD03G1005800.v1.1 MD11G1008700.v1.1 MD11G1008800.v1.1 MD14G1050400.v1.1 MD14G1050500.v1.1
prunus_persica	Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.6G005600_v2.0.a1 Prupe.7G085400_v2.0.a1
pyrus_communis	pycom03g00590 pycom11g00570
rosa_chinensis	RchiOBHm_Chr3g0478671 RchiOBHm_Chr5g0083131
rosa_laevigata	RLG00000023634 RLG00000037013
rosa_multiflora	Rmu_co8251633.1_g000001 Rmu_sc0002454.1_g000003 Rmu_sc0002900.1_g000004 Rmu_sc0008074.1_g000021
rosa_roxburghii	Rroxscaffold_1G00001380 Rroxscaffold_6G00403210
rosa_rugosa	Rorug03G0166900
rosa_samantha	Rh3AG219100 Rh3BG250800 Rh3CG247600 Rh3DG243900 Rh5AG532100 Rh5BG559200 Rh5CG582100 Rh5DG568000
rosa_wichuraiana	Rw3G019700 Rw5G049630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	52, 208
Acc65I	GGTACC	1 cut(s)	765
AccB1I	GGYRCC	2 cut(s)	454, 765
AccI	GTMKAC	1 cut(s)	498
AciI	CCGC	6 cut(s)	182, 229, 556, 646, 730, 841
AclWI	GGATC	3 cut(s)	261, 461, 474
AcsI	RAATTY	3 cut(s)	398, 430, 543
AcvI	CACGTG	1 cut(s)	473
AcyI	GRCGYC	3 cut(s)	49, 77, 205
AfaI	GTAC	2 cut(s)	734, 767
AfiI	CCNNNNNNNGG	6 cut(s)	11, 12, 188, 250, 304, 720
AgsI	TTSAA	4 cut(s)	383, 398, 436, 804
AjnI	CCWGG	3 cut(s)	26, 697, 852
AluBI	AGCT	2 cut(s)	95, 162
AluI	AGCT	2 cut(s)	95, 162
Alw26I	GTCTC	4 cut(s)	33, 427, 612, 795
AlwI	GGATC	3 cut(s)	261, 461, 474
AoxI	GGCC	5 cut(s)	120, 226, 241, 299, 317
ApeKI	GCWGC	2 cut(s)	92, 512
ApoI	RAATTY	3 cut(s)	398, 430, 543
Asp700I	GAANNNNTTC	1 cut(s)	431
Asp718I	GGTACC	1 cut(s)	765
AspA2I	CCTAGG	2 cut(s)	359, 719
AspS9I	GGNCC	3 cut(s)	121, 317, 335
AsuC2I	CCSGG	2 cut(s)	623, 770
AsuHPI	GGTGA	6 cut(s)	43, 106, 171, 657, 702, 741
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	335
AvrII	CCTAGG	2 cut(s)	359, 719
AxyI	CCTNAGG	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	466
BanI	GGYRCC	2 cut(s)	454, 765
BbrPI	CACGTG	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	104, 499
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	5 cut(s)	90, 135, 228, 304, 795
BciT130I	CCWGG	3 cut(s)	28, 699, 854
BcnI	CCSGG	2 cut(s)	623, 770
BcoDI	GTCTC	4 cut(s)	33, 427, 612, 795
BfaI	CTAG	6 cut(s)	216, 222, 249, 360, 720, 868
BfmI	CTRYAG	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	225, 325
BisI	GCNGC	4 cut(s)	93, 229, 513, 841
BlnI	CCTAGG	2 cut(s)	359, 719
BlsI	GCNGC	4 cut(s)	94, 230, 514, 842
Bme1390I	CCNGG	5 cut(s)	28, 623, 699, 770, 854
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	121, 317, 335
BmiI	GGNNCC	6 cut(s)	337, 456, 468, 767, 809, 839
BmrFI	CCNGG	5 cut(s)	28, 623, 699, 770, 854
BmsI	GCATC	2 cut(s)	499, 508
BoxI	GACNNNNGTC	1 cut(s)	624
Bpu10I	CCTNAGC	2 cut(s)	88, 579
Bpu14I	TTCGAA	1 cut(s)	105
BpuEI	CTTGAG	3 cut(s)	326, 721, 769
BpuMI	CCSGG	2 cut(s)	623, 770
BsaAI	YACGTR	2 cut(s)	314, 473
BsaHI	GRCGYC	3 cut(s)	49, 77, 205
BsaI	GGTCTC	3 cut(s)	33, 612, 795
BsaJI	CCNNGG	6 cut(s)	27, 117, 359, 600, 622, 719
BsaXI	ACNNNNNCTCC	2 cut(s)	829, 859
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 12, 188, 250, 304, 720
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	2 cut(s)	264, 379
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	3 cut(s)	28, 699, 854
BseDI	CCNNGG	6 cut(s)	27, 117, 359, 600, 622, 719
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	6 cut(s)	11, 12, 188, 250, 304, 720
BseMII	CTCAG	2 cut(s)	294, 570
BseNI	ACTGG	2 cut(s)	264, 379
BseRI	GAGGAG	2 cut(s)	252, 596
BseXI	GCAGC	2 cut(s)	104, 499
BseYI	CCCAGC	1 cut(s)	11
BshFI	GGCC	5 cut(s)	122, 228, 243, 301, 319
BshNI	GGYRCC	2 cut(s)	454, 765
BsiSI	CCGG	3 cut(s)	298, 622, 769
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	6 cut(s)	11, 12, 188, 250, 304, 720
BsmAI	GTCTC	4 cut(s)	33, 427, 612, 795
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	5 cut(s)	122, 228, 243, 301, 319
Bso31I	GGTCTC	3 cut(s)	33, 612, 795
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	253, 466, 776
BspACI	CCGC	6 cut(s)	182, 229, 556, 646, 730, 841
BspANI	GGCC	5 cut(s)	122, 228, 243, 301, 319
BspCNI	CTCAG	2 cut(s)	295, 571
BspLI	GGNNCC	6 cut(s)	337, 456, 468, 767, 809, 839
BspPI	GGATC	3 cut(s)	261, 461, 474
BspT104I	TTCGAA	1 cut(s)	105
BspT107I	GGYRCC	2 cut(s)	454, 765
BspTNI	GGTCTC	3 cut(s)	33, 612, 795
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	264, 379
BssAI	RCCGGY	1 cut(s)	297
BssECI	CCNNGG	6 cut(s)	27, 117, 359, 600, 622, 719
BssMI	GATC	3 cut(s)	253, 466, 776
BssNI	GRCGYC	3 cut(s)	49, 77, 205
BssT1I	CCWWGG	2 cut(s)	359, 719
Bst2UI	CCWGG	3 cut(s)	28, 699, 854
Bst4CI	ACNGT	2 cut(s)	167, 568
BstACI	GRCGYC	3 cut(s)	49, 77, 205
BstBAI	YACGTR	2 cut(s)	314, 473
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	299, 644
BstDEI	CTNAG	3 cut(s)	88, 303, 579
BstDSI	CCRYGG	1 cut(s)	117
BstENI	CCTNNNNNAGG	1 cut(s)	718
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	3 cut(s)	256, 469, 779
BstMAI	GTCTC	4 cut(s)	33, 427, 612, 795
BstMBI	GATC	3 cut(s)	253, 466, 776
BstNI	CCWGG	3 cut(s)	28, 699, 854
BstPAI	GACNNNNGTC	1 cut(s)	624
BstSCI	CCNGG	5 cut(s)	26, 621, 697, 768, 852
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	104, 499
BstX2I	RGATCY	2 cut(s)	253, 466
BstXI	CCANNNNNNTGG	2 cut(s)	271, 536
BstYI	RGATCY	2 cut(s)	253, 466
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	5 cut(s)	122, 228, 243, 301, 319
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	2 cut(s)	299, 644
Cfr10I	RCCGGY	1 cut(s)	297
Cfr13I	GGNCC	3 cut(s)	121, 317, 335
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	733, 766
CviAII	CATG	1 cut(s)	290
CviQI	GTAC	2 cut(s)	733, 766
DdeI	CTNAG	3 cut(s)	88, 303, 579
DpnI	GATC	3 cut(s)	255, 468, 778
DpnII	GATC	3 cut(s)	253, 466, 776
EciI	GGCGGA	1 cut(s)	661
Eco130I	CCWWGG	2 cut(s)	359, 719
Eco31I	GGTCTC	3 cut(s)	33, 612, 795
Eco47I	GGWCC	1 cut(s)	335
Eco72I	CACGTG	1 cut(s)	473
Eco81I	CCTNAGG	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	718
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	3 cut(s)	26, 697, 852
EcoT14I	CCWWGG	2 cut(s)	359, 719
ErhI	CCWWGG	2 cut(s)	359, 719
FaeI	CATG	1 cut(s)	293
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	1 cut(s)	289
FauI	CCCGC	1 cut(s)	549
FauNDI	CATATG	2 cut(s)	531, 634
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	4 cut(s)	93, 229, 513, 841
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	4 cut(s)	93, 229, 513, 841
FspBI	CTAG	6 cut(s)	216, 222, 249, 360, 720, 868
GluI	GCNGC	4 cut(s)	93, 229, 513, 841
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	5 cut(s)	122, 228, 243, 301, 319
HapII	CCGG	3 cut(s)	298, 622, 769
HgaI	GACGC	1 cut(s)	66
Hin1I	GRCGYC	3 cut(s)	49, 77, 205
Hin1II	CATG	1 cut(s)	293
HpaII	CCGG	3 cut(s)	298, 622, 769
HphI	GGTGA	6 cut(s)	43, 106, 171, 657, 702, 741
Hpy166II	GTNNAC	2 cut(s)	499, 665
Hpy188I	TCNGA	2 cut(s)	604, 825
Hpy188III	TCNNGA	2 cut(s)	424, 690
Hpy8I	GTNNAC	2 cut(s)	499, 665
Hpy99I	CGWCG	5 cut(s)	51, 54, 82, 207, 210
HpyAV	CCTTC	4 cut(s)	28, 186, 604, 720
HpyCH4III	ACNGT	2 cut(s)	167, 568
HpyCH4IV	ACGT	4 cut(s)	49, 205, 313, 472
HpyF3I	CTNAG	3 cut(s)	88, 303, 579
HpySE526I	ACGT	4 cut(s)	49, 205, 313, 472
Hsp92I	GRCGYC	3 cut(s)	49, 77, 205
Hsp92II	CATG	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	769
KroI	GCCGGC	1 cut(s)	297
KroNI	GCCGGC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	253, 466, 776
LmnI	GCTCC	4 cut(s)	648, 772, 807, 837
Lsp1109I	GCAGC	2 cut(s)	104, 499
LweI	GCATC	2 cut(s)	499, 508
MaeI	CTAG	6 cut(s)	216, 222, 249, 360, 720, 868
MaeII	ACGT	4 cut(s)	49, 205, 313, 472
MaeIII	GTNAC	2 cut(s)	167, 191
MalI	GATC	3 cut(s)	255, 468, 778
MboI	GATC	3 cut(s)	253, 466, 776
MboII	GAAGA	8 cut(s)	156, 248, 275, 395, 421, 439, 539, 604
MflI	RGATCY	2 cut(s)	253, 466
MluCI	AATT	6 cut(s)	329, 398, 430, 441, 543, 560
MmeI	TCCRAC	2 cut(s)	396, 803
MroNI	GCCGGC	1 cut(s)	297
MroXI	GAANNNNTTC	1 cut(s)	431
MslI	CAYNNNNRTG	1 cut(s)	534
MspI	CCGG	3 cut(s)	298, 622, 769
MspR9I	CCNGG	5 cut(s)	28, 623, 699, 770, 854
MvaI	CCWGG	3 cut(s)	28, 699, 854
NaeI	GCCGGC	1 cut(s)	299
NciI	CCSGG	2 cut(s)	623, 770
NdeI	CATATG	2 cut(s)	531, 634
NdeII	GATC	3 cut(s)	253, 466, 776
NgoMIV	GCCGGC	1 cut(s)	297
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	6 cut(s)	337, 456, 468, 767, 809, 839
NmeAIII	GCCGAG	1 cut(s)	210
NspV	TTCGAA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	676
PdiI	GCCGGC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	431
PflFI	GACNNNGTC	1 cut(s)	204
PkrI	GCNGC	4 cut(s)	94, 230, 514, 842
PmaCI	CACGTG	1 cut(s)	473
PmlI	CACGTG	1 cut(s)	473
Ppu21I	YACGTR	2 cut(s)	314, 473
PshAI	GACNNNNGTC	1 cut(s)	624
Psp6I	CCWGG	3 cut(s)	26, 697, 852
PspCI	CACGTG	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	11
PspGI	CCWGG	3 cut(s)	26, 697, 852
PspN4I	GGNNCC	6 cut(s)	337, 456, 468, 767, 809, 839
PspPI	GGNCC	3 cut(s)	121, 317, 335
PsuI	RGATCY	2 cut(s)	253, 466
PsyI	GACNNNGTC	1 cut(s)	204
RsaI	GTAC	2 cut(s)	734, 767
RsaNI	GTAC	2 cut(s)	733, 766
RseI	CAYNNNNRTG	1 cut(s)	534
SatI	GCNGC	4 cut(s)	93, 229, 513, 841
Sau3AI	GATC	3 cut(s)	253, 466, 776
Sau96I	GGNCC	3 cut(s)	121, 317, 335
ScrFI	CCNGG	5 cut(s)	28, 623, 699, 770, 854
SfaNI	GCATC	2 cut(s)	499, 508
SfcI	CTRYAG	1 cut(s)	163
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	3 cut(s)	341, 736, 784
SmoI	CTYRAG	3 cut(s)	341, 736, 784
Sse9I	AATT	6 cut(s)	329, 398, 430, 441, 543, 560
SsiI	CCGC	6 cut(s)	182, 229, 556, 646, 730, 841
SspMI	CTAG	6 cut(s)	216, 222, 249, 360, 720, 868
StyD4I	CCNGG	5 cut(s)	26, 621, 697, 768, 852
StyI	CCWWGG	2 cut(s)	359, 719
TaaI	ACNGT	2 cut(s)	167, 568
TaiI	ACGT	4 cut(s)	52, 208, 316, 475
TaqI	TCGA	6 cut(s)	105, 425, 679, 691, 743, 847
TasI	AATT	6 cut(s)	329, 398, 430, 441, 543, 560
TauI	GCSGC	2 cut(s)	231, 843
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	92, 512
TspDTI	ATGAA	2 cut(s)	391, 623
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	335
XagI	CCTNNNNNAGG	1 cut(s)	718
XapI	RAATTY	3 cut(s)	398, 430, 543
XcmI	CCANNNNNNNNNTGG	2 cut(s)	268, 529
XmaJI	CCTAGG	2 cut(s)	359, 719
XmiI	GTMKAC	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	6 cut(s)	216, 222, 249, 360, 720, 868
ZraI	GACGTC	2 cut(s)	50, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.