Rmu_sc0002530.1_g000014

Signal recognition particle receptor beta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002530.1
OG0006906
Physical Location & Seq
Reverse (-)
75930 .. 77553
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 654 bp
ctgaaagccgagtacagaagcttcaccagagccgtgaaatcaaagaatggtggcggtgaattgacggttgggatgccttgggagagagtggagagaattgggttccgggagctggcgagtagtagcggtgaatatggtggagagaagctaaagaaggaggagttgaatgcattgagggaaatgtttgaaacccgaaaaagggaagagctgaaatgggtgttggatgatgatgtggagataaaagaggagtggtttgatggtgagaatagggtgtcggacccgacgaagcggcggcgtggcgagggggaggtgattcagtttcttgttgagaggcttagtggtttggagttcactgaggggcaggttcttaaggttctgaatggacttggtgctaagaaatgttggaaacaggcattgtctgttgtggaatgggtttataaggacgggggcaataaacactgcaaaagcagctatgttgttgatgctgctgatcctgataacttgagcacctcaagaggggaacttcatgatttgcttagcaaatcctcacttaatggtatcccattgctgatcctgggtaacaagattgatagaccgggagctctgagtaaacaagctttgactgatgaaatgcaagacacatcatggttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arf PPR

Protein Analysis

217

Amino Acids

24.55

Weight (kDa)

5.68

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 158 - 212 1.6e-10 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 352
AciI CCGC 4 cut(s) 54, 126, 289, 292
AclWI GGATC 2 cut(s) 485, 565
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 4 cut(s) 112, 198, 199, 516
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 2 cut(s) 166, 188
AjnI CCWGG 1 cut(s) 573
AjuI GAANNNNNNNTTGG 4 cut(s) 51, 83, 203, 235
AluBI AGCT 7 cut(s) 21, 112, 148, 208, 471, 602, 617
AluI AGCT 7 cut(s) 21, 112, 148, 208, 471, 602, 617
Alw21I GWGCWC 2 cut(s) 509, 604
AlwI GGATC 2 cut(s) 485, 565
ApeKI GCWGC 2 cut(s) 468, 485
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 2 cut(s) 107, 597
AsuHPI GGTGA 5 cut(s) 16, 68, 140, 272, 322
AvaII GGWCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 604
BarI GAAGNNNNNNTAC 1 cut(s) 37
Bbv12I GWGCWC 2 cut(s) 509, 604
BbvI GCAGC 2 cut(s) 472, 480
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 575
BciVI GTATCC 1 cut(s) 569
BcnI CCSGG 2 cut(s) 107, 597
BfrI CTTAAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 352
BfuI GTATCC 1 cut(s) 569
BisI GCNGC 4 cut(s) 290, 293, 469, 486
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 4 cut(s) 291, 294, 470, 487
Bme1390I CCNGG 3 cut(s) 107, 575, 597
Bme18I GGWCC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 104, 279
BmrFI CCNGG 3 cut(s) 107, 575, 597
BmsI GCATC 2 cut(s) 63, 472
Bpu1102I GCTNAGC 1 cut(s) 536
BpuEI CTTGAG 2 cut(s) 496, 523
BpuMI CCSGG 2 cut(s) 107, 597
BsaJI CCNNGG 2 cut(s) 77, 574
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 198, 199, 516
Bse3DI GCAATG 1 cut(s) 563
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 77, 574
BseGI GGATG 2 cut(s) 78, 229
BseLI CCNNNNNNNGG 4 cut(s) 112, 198, 199, 516
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 2 cut(s) 345, 596
BseRI GAGGAG 2 cut(s) 173, 260
BseXI GCAGC 2 cut(s) 472, 480
BsiHKAI GWGCWC 2 cut(s) 509, 604
BsiSI CCGG 2 cut(s) 106, 596
BslI CCNNNNNNNGG 4 cut(s) 112, 198, 199, 516
BsmI GAATGC 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 509, 604
Bsp143I GATC 2 cut(s) 490, 570
Bsp1720I GCTNAGC 1 cut(s) 536
BspACI CCGC 4 cut(s) 54, 126, 289, 292
BspCNI CTCAG 2 cut(s) 346, 597
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 2 cut(s) 104, 279
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 2 cut(s) 485, 565
BspQI GCTCTTC 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 77, 574
BssMI GATC 2 cut(s) 490, 570
BssT1I CCWWGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 5 cut(s) 335, 354, 393, 536, 605
BstF5I GGATG 2 cut(s) 78, 229
BstKTI GATC 2 cut(s) 493, 573
BstMBI GATC 2 cut(s) 490, 570
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstNI CCWGG 1 cut(s) 575
BstSCI CCNGG 3 cut(s) 105, 573, 595
BstV1I GCAGC 2 cut(s) 472, 480
BsuI GTATCC 1 cut(s) 569
BtsCI GGATG 2 cut(s) 78, 229
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 351, 457
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 527, 645
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 5 cut(s) 335, 354, 393, 536, 605
DpnI GATC 2 cut(s) 492, 572
DpnII GATC 2 cut(s) 490, 570
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 602
EcoICRI GAGCTC 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 2 cut(s) 530, 648
FaiI YATR 5 cut(s) 135, 438, 474, 528, 646
FatI CATG 2 cut(s) 526, 644
Fnu4HI GCNGC 4 cut(s) 290, 293, 469, 486
FokI GGATG 2 cut(s) 85, 236
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 4 cut(s) 290, 293, 469, 486
GluI GCNGC 4 cut(s) 290, 293, 469, 486
HapII CCGG 2 cut(s) 106, 596
Hin1II CATG 2 cut(s) 530, 648
HindIII AAGCTT 2 cut(s) 19, 615
HinfI GANTC 1 cut(s) 313
HpaII CCGG 2 cut(s) 106, 596
HphI GGTGA 5 cut(s) 16, 68, 140, 272, 322
Hpy166II GTNNAC 2 cut(s) 351, 611
Hpy188I TCNGA 3 cut(s) 277, 378, 606
Hpy188III TCNNGA 3 cut(s) 494, 513, 527
Hpy8I GTNNAC 2 cut(s) 351, 611
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 170, 462, 634
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpyF3I CTNAG 5 cut(s) 335, 354, 393, 536, 605
Hsp92II CATG 2 cut(s) 530, 648
Kzo9I GATC 2 cut(s) 490, 570
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 2 cut(s) 109, 599
LpnPI CCDG 9 cut(s) 40, 98, 119, 347, 395, 507, 560, 587, 609
Lsp1109I GCAGC 2 cut(s) 472, 480
LweI GCATC 2 cut(s) 63, 472
MaeIII GTNAC 1 cut(s) 578
MalI GATC 2 cut(s) 492, 572
MboI GATC 2 cut(s) 490, 570
MboII GAAGA 1 cut(s) 215
MhlI GDGCHC 2 cut(s) 509, 604
MluCI AATT 2 cut(s) 59, 96
MmeI TCCRAC 3 cut(s) 201, 255, 383
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 2 cut(s) 369, 552
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 2 cut(s) 106, 596
MspR9I CCNGG 3 cut(s) 107, 575, 597
Mva1269I GAATGC 1 cut(s) 172
MvaI CCWGG 1 cut(s) 575
MwoI GCNNNNNNNGC 1 cut(s) 468
NciI CCSGG 2 cut(s) 107, 597
NdeII GATC 2 cut(s) 490, 570
NlaIII CATG 2 cut(s) 530, 648
NlaIV GGNNCC 2 cut(s) 104, 279
NmeAIII GCCGAG 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 172
PagI TCATGA 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 313
PfoI TCCNGGA 1 cut(s) 105
PkrI GCNGC 4 cut(s) 291, 294, 470, 487
PsiI TTATAA 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 2 cut(s) 104, 279
PspPI GGNCC 1 cut(s) 277
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 604
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 369, 552
SatI GCNGC 4 cut(s) 290, 293, 469, 486
Sau3AI GATC 2 cut(s) 490, 570
Sau96I GGNCC 1 cut(s) 277
ScrFI CCNGG 3 cut(s) 107, 575, 597
SduI GDGCHC 2 cut(s) 509, 604
SfaNI GCATC 2 cut(s) 63, 472
SinI GGWCC 1 cut(s) 277
SmlI CTYRAG 3 cut(s) 368, 502, 511
SmoI CTYRAG 3 cut(s) 368, 502, 511
Sse9I AATT 2 cut(s) 59, 96
SsiI CCGC 4 cut(s) 54, 126, 289, 292
SstI GAGCTC 1 cut(s) 604
StyD4I CCNGG 3 cut(s) 105, 573, 595
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 67
TasI AATT 2 cut(s) 59, 96
TatI WGTACW 1 cut(s) 12
TauI GCSGC 2 cut(s) 292, 295
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 2 cut(s) 369, 552
Tru9I TTAA 2 cut(s) 369, 552
TscAI CASTG 2 cut(s) 358, 464
TseI GCWGC 2 cut(s) 468, 485
TspDTI ATGAA 2 cut(s) 515, 642
TspRI CASTG 2 cut(s) 358, 464
Vha464I CTTAAG 1 cut(s) 368
VpaK11BI GGWCC 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.