Rmu_sc0002701.1_g000058

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002701.1
OG0004858
Physical Location & Seq
Forward (+)
198617 .. 203175
4559 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2916 bp
atgtgcttcaaccgcaacaacctagatgtatatacagccctagatgtatattctgtaaagtttacagaattcaaaagctgcttctccggcggcgttgagcttcaaatgtccggtgaggcgcgtcgccttcacccttctctcaaggtacactattatcacactctcaactcctcccgacccacctctgcttttcacagcagctttgattttctcactcagttcttgccattctcttccaacaagcccaattccaaatcctctatgaactccaatgagcggcgtaaagtcactgttgggttatccaggatcataaagaaccaacagggctatgtactcaagggcttttccagaaccttctgcccattttttcttgtaaagattatgaaactgttctgttgtagagaaactgcatttgggttctttaaactagcctttagggatgataatcagcagactgtggagtcatgttgtgtggctgcacatgttttggcggccgaaaatctacggtttctggctcaagatgtggtttcgtgtgtgattgggaggattggcccgagtaggagtagggatttggtggggtttatgtggggagggcattgtgaatacgagtcggatttttcggttcttgatacactaatgagggggttcttgaatgcggaaatgggcgccgaggctttggaggttttgaggaggatgagggaggtgggagtgaggccgagtttgtcagcggttgcgattctgttcaggttgttgataagggttggtgattatggtagtgtgtggaaggtgtttagggatatgattagagaagggccttatccatgtaattatgtttttagtgcaatgattcttgggttttgtcaaaaagggttggttagagttggggagagtttgttacaggtgatgtggaaattccaatgtgaaccggatgtttttgcttataacattgtgatctatgcaaattgtgcgagagggcagacagctgatgcgcttgaatgggtggagttgatgattgcgaggggatgtaaaccgagcattgttacatttaatacagtcataagtgcattgtgtaaggagggaaatgtggtggaggcaaggaagctttttgatgatgtcccagacatgggtgtttatccgaataccataatttacaataccatgatggatgggtatgttaaggcaagggagattggtcaggctaacacgctttttgaagaaatgagaaacaagagcatttctccagatggcataactttcaatatcttgattggagggcattacaagtatggaagtgaagatgatggagacaggttgttgcgggatttatctgtgtcaggattacttccagattcttcattgtatgatatctatgtttctgtgttgtgttgggcagatcggttggacgatgccatggcagttttagaggatatgcttgaaagaggattgcctctaagtgtggtcgctttcaactctgtcattgcagcttgtagcagagtagggttggaagaaaaaacatataaggcctttaacttcatgatttcatttggtataactccttcatcttctacgtgtagttctttgcttatgggtttatctaagaagggttacttgcaagaagccagagagcttttgtgtaaaatgatggagaaggggtttcctatcagaaaagctgcttttacggtgcttttggatgggtactttaggatgggtgatttagatggggcacaaagtttgtggaatgagatggaaggaagaggcatatctcctgatgttgttgccttttcagcatttatcaatggactatcgaaagccggtttaatggaagaagcatatgatatgtttcaagaaatgtcaagaagaggttttgtgcccaataattttgtctataattctttgattggtgggttttgctactgtggtaagttgagtgatgcactggggttggagagagagatgaggcaaaggggtcttgttccggatatttttaccaccaatatgatcattcatgggttctgtagacaggggaggatgaagtcagcaattaatacatttatgaacatgttccaaactgggttaaccccagatatcgtcacttacaatacattaattggtggttattgtaaagtatttgacatggttagggcagatgaatttttgtataaaatgtacgctagcggatgggaaccagatatcacaacctataatatacggatgcatggtttttgtagtagccgaaagataaatcgagctgtgatgattctggatgagcttgtatcgagaggtgttgttccggacacagtaacatacaacactatgatgaatggtgtttgtgttgacatactggatcgtgctatgattttaaccgctaaattgcttaagttggcgtttcttccaaatgttgttacagctaatgtattgttgtctcagttccgcaggcaggggatgcctgagaaggccctaatgtggggtcagaagttgagtcagttttccttttgttttgatgaaattacctacaaaatattggacagagcctatcaaaatatgcaagaagatcctgcaattccaagtgcaacacctgagaaaagcctcttcttggatttcctcatgtacattacgtatgattatttatgtaaaaataaaccttgcagaggttccgataaaggaggtggaaaggagattgggctagtagcaaagaagtcaagctcggccagtgttgaagtgttggctgaaattccagaaggtcagcactcttccattgatgtttggcatgtgataagtgcatctgtgaaagcagcatgctcccctgcaaaagattctggggaagaagtgaaagatctgcgatttgcatctacttgttcccttgttgcaatggatgccgatggctctcctgtttcgtttttttggagtggtgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 map00500
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

971

Amino Acids

108.8

Weight (kDa)

6.64

Isoelectric Point (pI)

34.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 274 - 322 5.2e-06 PPR repeat family
PPR_3 PF13812 299 - 356 2.1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 309 - 358 1.6e-12 PPR repeat family
PPR_1 PF12854 340 - 371 8.9e-12 PPR repeat
PPR_2 PF13041 344 - 381 3.3e-09 PPR repeat family
PPR PF01535 347 - 377 9.7e-07 PPR repeat
PPR_3 PF13812 367 - 424 1.5e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 379 - 427 5.2e-15 PPR repeat family
PPR_long PF17177 467 - 597 5.9e-09 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 470 - 581 3.2e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 485 - 533 2.4e-06 PPR repeat family
PPR_2 PF13041 558 - 603 2.2e-11 PPR repeat family
PPR_1 PF12854 585 - 618 7.6e-09 PPR repeat
PPR_2 PF13041 589 - 637 5.3e-15 PPR repeat family
PPR PF01535 592 - 622 2.8e-07 PPR repeat
PPR_3 PF13812 613 - 668 2.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 620 - 653 3e-08 PPR repeat
PPR_2 PF13041 626 - 673 1.4e-12 PPR repeat family
PPR_3 PF13812 650 - 706 2.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 655 - 684 2e-07 PPR repeat
PPR_2 PF13041 659 - 708 3.7e-16 PPR repeat family
PPR_1 PF12854 691 - 709 6.3e-07 PPR repeat
PPR_2 PF13041 694 - 742 1.7e-13 PPR repeat family
PPR_2 PF13041 729 - 777 2.9e-14 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AasI GACNNNNNNGTC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 665
AccBSI CCGCTC 1 cut(s) 277
AccI GTMKAC 1 cut(s) 2017
AccII CGCG 1 cut(s) 121
AccIII TCCGGA 2 cut(s) 1975, 2290
AclWI GGATC 3 cut(s) 314, 2352, 2546
AcoI YGGCCR 2 cut(s) 492, 2706
AcsI RAATTY 4 cut(s) 68, 911, 2150, 2730
AcyI GRCGYC 1 cut(s) 666
AfaI GTAC 5 cut(s) 147, 333, 1697, 2168, 2609
AfiI CCNNNNNNNGG 8 cut(s) 276, 1123, 1124, 2437, 2463, 2464, 2593, 2648
AflII CTTAAG 1 cut(s) 2375
AflIII ACRYGT 3 cut(s) 481, 1568, 2058
AjnI CCWGG 1 cut(s) 302
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
Alw26I GTCTC 2 cut(s) 1299, 2427
AlwI GGATC 3 cut(s) 314, 2352, 2546
Ama87I CYCGRG 1 cut(s) 553
Aor13HI TCCGGA 2 cut(s) 1975, 2290
AoxI GGCC 7 cut(s) 492, 550, 713, 812, 1521, 2454, 2706
ApeKI GCWGC 6 cut(s) 78, 198, 476, 1481, 1670, 2792
ApoI RAATTY 4 cut(s) 68, 911, 2150, 2730
AseI ATTAAT 2 cut(s) 2043, 2105
Asp700I GAANNNNTTC 2 cut(s) 389, 2060
AspLEI GCGC 3 cut(s) 121, 668, 991
AspS9I GGNCC 3 cut(s) 551, 812, 2455
AsuHPI GGTGA 5 cut(s) 122, 125, 776, 913, 1721
AsuNHI GCTAGC 1 cut(s) 2171
AvaI CYCGRG 1 cut(s) 553
BaeGI GKGCMC 2 cut(s) 1726, 1872
BanI GGYRCC 1 cut(s) 665
BarI GAAGNNNNNNTAC 2 cut(s) 1540, 1572
BbvI GCAGC 6 cut(s) 65, 210, 463, 1493, 1657, 2804
BciT130I CCWGG 1 cut(s) 304
BclI TGATCA 1 cut(s) 1998
BcoDI GTCTC 2 cut(s) 1299, 2427
BfaI CTAG 5 cut(s) 23, 41, 428, 2172, 2684
BfmI CTRYAG 1 cut(s) 2014
BfoI RGCGCY 1 cut(s) 669
BfrI CTTAAG 1 cut(s) 2375
BglII AGATCT 1 cut(s) 2833
BisI GCNGC 9 cut(s) 79, 91, 199, 278, 477, 492, 1482, 1671, 2793
BlsI GCNGC 9 cut(s) 80, 92, 200, 279, 478, 493, 1483, 1672, 2794
Bme1390I CCNGG 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 3 cut(s) 551, 812, 2455
BmiI GGNNCC 3 cut(s) 667, 2184, 2653
BmrFI CCNGG 1 cut(s) 304
BmrI ACTGGG 2 cut(s) 1946, 2079
BmsI GCATC 8 cut(s) 976, 1396, 1921, 2202, 2433, 2789, 2855, 2863
BmtI GCTAGC 1 cut(s) 2175
BmuI ACTGGG 2 cut(s) 1946, 2079
BplI GAGNNNNNCTC 2 cut(s) 1222, 1254
BpmI CTGGAG 1 cut(s) 1224
BpuEI CTTGAG 3 cut(s) 125, 320, 501
BsaAI YACGTR 2 cut(s) 1569, 2616
BsaBI GATNNNNATC 2 cut(s) 444, 2845
BsaHI GRCGYC 1 cut(s) 666
BsaJI CCNNGG 2 cut(s) 669, 1410
BsaWI WCCGGW 4 cut(s) 110, 925, 1975, 2290
BsaXI ACNNNNNCTCC 4 cut(s) 878, 908, 1637, 1667
Bsc4I CCNNNNNNNGG 8 cut(s) 276, 1123, 1124, 2437, 2463, 2464, 2593, 2648
Bse118I RCCGGY 1 cut(s) 1811
Bse1I ACTGG 4 cut(s) 1941, 2074, 2346, 2709
Bse3DI GCAATG 3 cut(s) 849, 1476, 2874
Bse8I GATNNNNATC 2 cut(s) 444, 2845
BseAI TCCGGA 2 cut(s) 1975, 2290
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 669, 1410
BseJI GATNNNNATC 2 cut(s) 444, 2845
BseLI CCNNNNNNNGG 8 cut(s) 276, 1123, 1124, 2437, 2463, 2464, 2593, 2648
BseMI GCAATG 3 cut(s) 849, 1476, 2874
BseMII CTCAG 4 cut(s) 230, 2438, 2439, 2568
BseNI ACTGG 4 cut(s) 1941, 2074, 2346, 2709
BseRI GAGGAG 2 cut(s) 160, 703
BseSI GKGCMC 2 cut(s) 1726, 1872
BseX3I CGGCCG 1 cut(s) 492
BseXI GCAGC 6 cut(s) 65, 210, 463, 1493, 1657, 2804
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 495
BshFI GGCC 7 cut(s) 494, 552, 715, 814, 1523, 2456, 2708
BshNI GGYRCC 1 cut(s) 665
BsiEI CGRYCG 1 cut(s) 495
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 6 cut(s) 87, 111, 926, 1812, 1976, 2291
BslFI GGGAC 1 cut(s) 1100
BslI CCNNNNNNNGG 8 cut(s) 276, 1123, 1124, 2437, 2463, 2464, 2593, 2648
BsmAI GTCTC 2 cut(s) 1299, 2427
BsmFI GGGAC 1 cut(s) 1100
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 7 cut(s) 494, 552, 715, 814, 1523, 2456, 2708
BsoBI CYCGRG 1 cut(s) 553
Bsp1286I GDGCHC 2 cut(s) 1726, 1872
Bsp13I TCCGGA 2 cut(s) 1975, 2290
Bsp1407I TGTACA 1 cut(s) 2607
Bsp143I GATC 7 cut(s) 306, 951, 1393, 1998, 2344, 2551, 2833
Bsp19I CCATGG 1 cut(s) 1410
BspANI GGCC 7 cut(s) 494, 552, 715, 814, 1523, 2456, 2708
BspCNI CTCAG 4 cut(s) 229, 2437, 2440, 2569
BspEI TCCGGA 2 cut(s) 1975, 2290
BspFNI CGCG 1 cut(s) 121
BspHI TCATGA 1 cut(s) 1533
BspLI GGNNCC 3 cut(s) 667, 2184, 2653
BspOI GCTAGC 1 cut(s) 2175
BspPI GGATC 3 cut(s) 314, 2352, 2546
BspT107I GGYRCC 1 cut(s) 665
BspTI CTTAAG 1 cut(s) 2375
BsrBI CCGCTC 1 cut(s) 277
BsrDI GCAATG 3 cut(s) 849, 1476, 2874
BsrFI RCCGGY 1 cut(s) 1811
BsrGI TGTACA 1 cut(s) 2607
BsrI ACTGG 4 cut(s) 1941, 2074, 2346, 2709
BssAI RCCGGY 1 cut(s) 1811
BssECI CCNNGG 2 cut(s) 669, 1410
BssMI GATC 7 cut(s) 306, 951, 1393, 1998, 2344, 2551, 2833
BssNI GRCGYC 1 cut(s) 666
BssT1I CCWWGG 1 cut(s) 1410
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 8 cut(s) 292, 390, 457, 507, 1054, 1681, 1916, 2299
Bst6I CTCTTC 5 cut(s) 238, 1747, 1852, 2594, 2755
BstACI GRCGYC 1 cut(s) 666
BstAFI CTTAAG 1 cut(s) 2375
BstAPI GCANNNNNTGC 3 cut(s) 965, 2443, 2873
BstAUI TGTACA 1 cut(s) 2607
BstBAI YACGTR 2 cut(s) 1569, 2616
BstC8I GCNNGC 3 cut(s) 2173, 2435, 2797
BstDEI CTNAG 6 cut(s) 216, 1451, 1596, 2424, 2448, 2577
BstDSI CCRYGG 1 cut(s) 1410
BstENI CCTNNNNNAGG 1 cut(s) 2646
BstFNI CGCG 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 669
BstHHI GCGC 3 cut(s) 121, 668, 991
BstKTI GATC 7 cut(s) 309, 954, 1396, 2001, 2347, 2554, 2836
BstMAI GTCTC 2 cut(s) 1299, 2427
BstMBI GATC 7 cut(s) 306, 951, 1393, 1998, 2344, 2551, 2833
BstMCI CGRYCG 1 cut(s) 495
BstMWI GCNNNNNNNGC 6 cut(s) 12, 87, 965, 1784, 2443, 2873
BstNI CCWGG 1 cut(s) 304
BstNSI RCATGY 4 cut(s) 485, 2062, 2771, 2799
BstSCI CCNGG 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 2014
BstSLI GKGCMC 2 cut(s) 1726, 1872
BstSNI TACGTA 1 cut(s) 2616
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 6 cut(s) 65, 210, 463, 1493, 1657, 2804
BstX2I RGATCY 2 cut(s) 2551, 2833
BstYI RGATCY 2 cut(s) 2551, 2833
BstZI CGGCCG 1 cut(s) 492
BsuRI GGCC 7 cut(s) 494, 552, 715, 814, 1523, 2456, 2708
BtgI CCRYGG 1 cut(s) 1410
BtsIMutI CAGTG 3 cut(s) 288, 1934, 2716
Cac8I GCNNGC 3 cut(s) 2173, 2435, 2797
CciI TCATGA 1 cut(s) 1533
CfoI GCGC 3 cut(s) 121, 668, 991
Cfr10I RCCGGY 1 cut(s) 1811
Cfr13I GGNCC 3 cut(s) 551, 812, 2455
CseI GACGC 1 cut(s) 110
Csp6I GTAC 5 cut(s) 146, 332, 1696, 2167, 2608
CspCI CAANNNNNGTGG 2 cut(s) 1715, 1750
CviQI GTAC 5 cut(s) 146, 332, 1696, 2167, 2608
DdeI CTNAG 6 cut(s) 216, 1451, 1596, 2424, 2448, 2577
DinI GGCGCC 1 cut(s) 667
DpnI GATC 7 cut(s) 308, 953, 1395, 2000, 2346, 2553, 2835
DpnII GATC 7 cut(s) 306, 951, 1393, 1998, 2344, 2551, 2833
DraI TTTAAA 1 cut(s) 424
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 2 cut(s) 492, 2706
EagI CGGCCG 1 cut(s) 492
Eam1104I CTCTTC 5 cut(s) 238, 1747, 1852, 2594, 2755
EarI CTCTTC 5 cut(s) 238, 1747, 1852, 2594, 2755
EclXI CGGCCG 1 cut(s) 492
Eco105I TACGTA 1 cut(s) 2616
Eco130I CCWWGG 1 cut(s) 1410
Eco147I AGGCCT 1 cut(s) 1523
Eco32I GATATC 3 cut(s) 1366, 2086, 2191
Eco52I CGGCCG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 553
EcoNI CCTNNNNNAGG 1 cut(s) 2646
EcoO109I RGGNCCY 2 cut(s) 812, 2455
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 302
EcoRV GATATC 3 cut(s) 1366, 2086, 2191
EcoT14I CCWWGG 1 cut(s) 1410
EcoT22I ATGCAT 1 cut(s) 2217
EgeI GGCGCC 1 cut(s) 667
EheI GGCGCC 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 1410
FalI AAGNNNNNCTT 2 cut(s) 1592, 1624
FaqI GGGAC 1 cut(s) 1100
FauI CCCGC 1 cut(s) 1311
FauNDI CATATG 1 cut(s) 1831
FbaI TGATCA 1 cut(s) 1998
FblI GTMKAC 1 cut(s) 2017
Fnu4HI GCNGC 9 cut(s) 79, 91, 199, 278, 477, 492, 1482, 1671, 2793
Fsp4HI GCNGC 9 cut(s) 79, 91, 199, 278, 477, 492, 1482, 1671, 2793
FspBI CTAG 5 cut(s) 23, 41, 428, 2172, 2684
GlaI GCGC 3 cut(s) 120, 667, 990
GluI GCNGC 9 cut(s) 79, 91, 199, 278, 477, 492, 1482, 1671, 2793
GsuI CTGGAG 1 cut(s) 1224
HaeII RGCGCY 1 cut(s) 669
HaeIII GGCC 7 cut(s) 494, 552, 715, 814, 1523, 2456, 2708
HapII CCGG 6 cut(s) 87, 111, 926, 1812, 1976, 2291
HgaI GACGC 1 cut(s) 110
HhaI GCGC 3 cut(s) 121, 668, 991
Hin1I GRCGYC 1 cut(s) 666
Hin6I GCGC 3 cut(s) 119, 666, 989
HinP1I GCGC 3 cut(s) 119, 666, 989
HincII GTYRAC 2 cut(s) 2076, 2335
HindII GTYRAC 2 cut(s) 2076, 2335
HindIII AAGCTT 1 cut(s) 1100
HinfI GANTC 8 cut(s) 461, 608, 736, 847, 1349, 2257, 2479, 2813
HpaI GTTAAC 1 cut(s) 2076
HpaII CCGG 6 cut(s) 87, 111, 926, 1812, 1976, 2291
HphI GGTGA 5 cut(s) 122, 125, 776, 913, 1721
Hpy166II GTNNAC 7 cut(s) 63, 148, 923, 1028, 2018, 2076, 2335
Hpy188I TCNGA 5 cut(s) 613, 1137, 1664, 2472, 2656
Hpy8I GTNNAC 7 cut(s) 63, 148, 923, 1028, 2018, 2076, 2335
Hpy99I CGWCG 1 cut(s) 126
HpyCH4III ACNGT 8 cut(s) 292, 390, 457, 507, 1054, 1681, 1916, 2299
HpyCH4IV ACGT 2 cut(s) 1568, 2615
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 87, 965, 1784, 2443, 2873
HpyF3I CTNAG 6 cut(s) 216, 1451, 1596, 2424, 2448, 2577
HpySE526I ACGT 2 cut(s) 1568, 2615
Hsp92I GRCGYC 1 cut(s) 666
HspAI GCGC 3 cut(s) 119, 666, 989
KasI GGCGCC 1 cut(s) 665
Kpn2I TCCGGA 2 cut(s) 1975, 2290
Ksp22I TGATCA 1 cut(s) 1998
KspAI GTTAAC 1 cut(s) 2076
Kzo9I GATC 7 cut(s) 306, 951, 1393, 1998, 2344, 2551, 2833
LmnI GCTCC 1 cut(s) 2804
Lsp1109I GCAGC 6 cut(s) 65, 210, 463, 1493, 1657, 2804
LweI GCATC 8 cut(s) 976, 1396, 1921, 2202, 2433, 2789, 2855, 2863
MaeI CTAG 5 cut(s) 23, 41, 428, 2172, 2684
MaeII ACGT 2 cut(s) 1568, 2615
MaeIII GTNAC 7 cut(s) 286, 894, 1039, 1604, 2089, 2299, 2401
MalI GATC 7 cut(s) 308, 953, 1395, 2000, 2346, 2553, 2835
MbiI CCGCTC 1 cut(s) 277
MboI GATC 7 cut(s) 306, 951, 1393, 1998, 2344, 2551, 2833
MflI RGATCY 2 cut(s) 2551, 2833
MhlI GDGCHC 2 cut(s) 1726, 1872
Mly113I GGCGCC 1 cut(s) 666
MlyI GAGTC 3 cut(s) 470, 617, 2488
MmeI TCCRAC 5 cut(s) 261, 591, 1380, 1482, 1923
Mph1103I ATGCAT 1 cut(s) 2217
MroI TCCGGA 2 cut(s) 1975, 2290
MroXI GAANNNNTTC 2 cut(s) 389, 2060
MslI CAYNNNNRTG 2 cut(s) 1994, 2315
MspA1I CMGCKG 2 cut(s) 728, 983
MspCI CTTAAG 1 cut(s) 2375
MspI CCGG 6 cut(s) 87, 111, 926, 1812, 1976, 2291
MspR9I CCNGG 1 cut(s) 304
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 304
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 6 cut(s) 12, 87, 965, 1784, 2443, 2873
NarI GGCGCC 1 cut(s) 666
NcoI CCATGG 1 cut(s) 1410
NdeI CATATG 1 cut(s) 1831
NdeII GATC 7 cut(s) 306, 951, 1393, 1998, 2344, 2551, 2833
NheI GCTAGC 1 cut(s) 2171
NlaIV GGNNCC 3 cut(s) 667, 2184, 2653
NmeAIII GCCGAG 3 cut(s) 694, 741, 2684
NmuCI GTSAC 2 cut(s) 286, 2089
NsiI ATGCAT 1 cut(s) 2217
NspI RCATGY 4 cut(s) 485, 2062, 2771, 2799
PaeI GCATGC 1 cut(s) 2799
PagI TCATGA 1 cut(s) 1533
PceI AGGCCT 1 cut(s) 1523
PciI ACATGT 2 cut(s) 481, 2058
PctI GAATGC 1 cut(s) 658
PdmI GAANNNNTTC 2 cut(s) 389, 2060
PfeI GAWTC 5 cut(s) 736, 847, 1349, 2257, 2813
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 9 cut(s) 80, 92, 200, 279, 478, 493, 1483, 1672, 2794
PleI GAGTC 3 cut(s) 469, 616, 2487
PluTI GGCGCC 1 cut(s) 669
PpsI GAGTC 3 cut(s) 469, 616, 2487
Ppu21I YACGTR 2 cut(s) 1569, 2616
PscI ACATGT 2 cut(s) 481, 2058
PshBI ATTAAT 2 cut(s) 2043, 2105
PsiI TTATAA 1 cut(s) 942
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 3 cut(s) 667, 2184, 2653
PspPI GGNCC 3 cut(s) 551, 812, 2455
PsuI RGATCY 2 cut(s) 2551, 2833
PvuII CAGCTG 1 cut(s) 983
RsaI GTAC 5 cut(s) 147, 333, 1697, 2168, 2609
RsaNI GTAC 5 cut(s) 146, 332, 1696, 2167, 2608
RseI CAYNNNNRTG 2 cut(s) 1994, 2315
SatI GCNGC 9 cut(s) 79, 91, 199, 278, 477, 492, 1482, 1671, 2793
Sau3AI GATC 7 cut(s) 306, 951, 1393, 1998, 2344, 2551, 2833
Sau96I GGNCC 3 cut(s) 551, 812, 2455
SchI GAGTC 3 cut(s) 470, 617, 2488
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 2 cut(s) 1726, 1872
SfaNI GCATC 8 cut(s) 976, 1396, 1921, 2202, 2433, 2789, 2855, 2863
SfcI CTRYAG 1 cut(s) 2014
SfoI GGCGCC 1 cut(s) 667
SmiMI CAYNNNNRTG 2 cut(s) 1994, 2315
SmlI CTYRAG 4 cut(s) 140, 335, 516, 2375
SmoI CTYRAG 4 cut(s) 140, 335, 516, 2375
SnaBI TACGTA 1 cut(s) 2616
SphI GCATGC 1 cut(s) 2799
SseBI AGGCCT 1 cut(s) 1523
SspDI GGCGCC 1 cut(s) 665
SspI AATATT 1 cut(s) 2520
SspMI CTAG 5 cut(s) 23, 41, 428, 2172, 2684
StuI AGGCCT 1 cut(s) 1523
StyD4I CCNGG 1 cut(s) 302
StyI CCWWGG 1 cut(s) 1410
TaaI ACNGT 8 cut(s) 292, 390, 457, 507, 1054, 1681, 1916, 2299
TaiI ACGT 2 cut(s) 1571, 2618
TaqI TCGA 3 cut(s) 1805, 2245, 2276
TatI WGTACW 2 cut(s) 331, 2607
TauI GCSGC 3 cut(s) 93, 280, 494
TfiI GAWTC 5 cut(s) 736, 847, 1349, 2257, 2813
TscAI CASTG 3 cut(s) 295, 1941, 2716
TseFI GTSAC 2 cut(s) 286, 2089
TseI GCWGC 6 cut(s) 78, 198, 476, 1481, 1670, 2792
Tsp45I GTSAC 2 cut(s) 286, 2089
TspGWI ACGGA 1 cut(s) 2224
TspRI CASTG 3 cut(s) 295, 1941, 2716
Vha464I CTTAAG 1 cut(s) 2375
VspI ATTAAT 2 cut(s) 2043, 2105
XagI CCTNNNNNAGG 1 cut(s) 2646
XapI RAATTY 4 cut(s) 68, 911, 2150, 2730
XceI RCATGY 4 cut(s) 485, 2062, 2771, 2799
XmiI GTMKAC 1 cut(s) 2017
XmnI GAANNNNTTC 2 cut(s) 389, 2060
XspI CTAG 5 cut(s) 23, 41, 428, 2172, 2684
Zsp2I ATGCAT 1 cut(s) 2217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.