Rmu_sc0002855.1_g000006

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002855.1
OG0005204
Physical Location & Seq
Forward (+)
19832 .. 20670
839 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 582 bp
atggatggaaccgtggctgcagcacgtgttctcgtttctgcagtcggacagcgatcggaactcgatctcgctgacgttagattcatcatgctcaaagggaagccgcacttcgccgacttcaatctggtgtcggagggctggggtggctacgtgtatccctggatcgccgccatggccggtgcttatccttggctcgaggagatcaggctcaagaggatggtcgtcaccgacgagagcttggagctgattgcaactccgctaggttcatttcgtgtgccgaaccaggcggtgaatttttcgcagaggtggagctcggtaaaggctgtgaatgctcagccgaagaggagagattcgattgtgcctcttgcggccacgattgttgcgcctgaggatgttgagaaagtggaggcagaggactatgagcaattggctaaggagcttgggagtgcttctcttcttgagatcatgacaaggcgcttgagaaattcggcaacgacatggctattgccttcaggtaattcattttttcggttcatttatgtcatttctgcctctgtgctatgttgtttcgatgattattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

193

Amino Acids

21.5

Weight (kDa)

5.29

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transp_inhibit PF18791 25 - 70 1.2e-23 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 104, 168, 257, 287, 368
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 2 cut(s) 174, 369
AcsI RAATTY 2 cut(s) 292, 484
AcuI CTGAAG 1 cut(s) 495
AcvI CACGTG 1 cut(s) 26
AflIII ACRYGT 2 cut(s) 25, 150
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 2 cut(s) 158, 282
AluBI AGCT 4 cut(s) 237, 244, 312, 439
AluI AGCT 4 cut(s) 237, 244, 312, 439
Alw21I GWGCWC 1 cut(s) 314
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 2 cut(s) 174, 369
ApeKI GCWGC 2 cut(s) 17, 20
ApoI RAATTY 2 cut(s) 292, 484
AspLEI GCGC 2 cut(s) 385, 477
AsuHPI GGTGA 2 cut(s) 217, 301
AvaI CYCGRG 1 cut(s) 194
AxyI CCTNAGG 1 cut(s) 387
BanII GRGCYC 1 cut(s) 314
BbrPI CACGTG 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 2 cut(s) 4, 32
BccI CCATC 1 cut(s) 211
BciT130I CCWGG 2 cut(s) 160, 284
BciVI GTATCC 1 cut(s) 165
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 2 cut(s) 18, 39
BfoI RGCGCY 1 cut(s) 478
BfuI GTATCC 1 cut(s) 165
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 5 cut(s) 18, 21, 104, 168, 369
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 5 cut(s) 19, 22, 105, 169, 370
Bme1390I CCNGG 2 cut(s) 160, 284
BmeT110I CYCGRG 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 2 cut(s) 160, 284
BplI GAGNNNNNCTC 2 cut(s) 436, 468
Bpu10I CCTNAGC 1 cut(s) 432
Bpu1102I GCTNAGC 1 cut(s) 333
BpuEI CTTGAG 3 cut(s) 194, 479, 499
BsaAI YACGTR 2 cut(s) 26, 151
BsaJI CCNNGG 4 cut(s) 12, 158, 171, 188
Bse118I RCCGGY 1 cut(s) 176
Bse21I CCTNAGG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 160, 284
BseDI CCNNGG 4 cut(s) 12, 158, 171, 188
BseGI GGATG 3 cut(s) 10, 222, 397
BseMII CTCAG 2 cut(s) 347, 378
BseRI GAGGAG 2 cut(s) 212, 358
BseXI GCAGC 2 cut(s) 4, 32
BseYI CCCAGC 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 2 cut(s) 176, 371
BsiEI CGRYCG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 1 cut(s) 177
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 2 cut(s) 176, 371
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 5 cut(s) 53, 64, 162, 201, 462
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 171
BspACI CCGC 5 cut(s) 104, 168, 257, 287, 368
BspANI GGCC 2 cut(s) 176, 371
BspCNI CTCAG 2 cut(s) 346, 379
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 10
BspMAI CTGCAG 2 cut(s) 22, 43
BspPI GGATC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 12, 158, 171, 188
BssMI GATC 5 cut(s) 53, 64, 162, 201, 462
BssT1I CCWWGG 2 cut(s) 171, 188
Bst2UI CCWGG 2 cut(s) 160, 284
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 335, 459
BstBAI YACGTR 2 cut(s) 26, 151
BstDEI CTNAG 3 cut(s) 333, 387, 432
BstDSI CCRYGG 2 cut(s) 12, 171
BstF5I GGATG 3 cut(s) 10, 222, 397
BstH2I RGCGCY 1 cut(s) 478
BstHHI GCGC 2 cut(s) 385, 477
BstKTI GATC 5 cut(s) 56, 67, 165, 204, 465
BstMBI GATC 5 cut(s) 53, 64, 162, 201, 462
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 3 cut(s) 144, 173, 329
BstNI CCWGG 2 cut(s) 160, 284
BstSCI CCNGG 2 cut(s) 158, 282
BstSFI CTRYAG 2 cut(s) 18, 39
BstV1I GCAGC 2 cut(s) 4, 32
Bsu36I CCTNAGG 1 cut(s) 387
BsuI GTATCC 1 cut(s) 165
BsuRI GGCC 2 cut(s) 176, 371
BtgI CCRYGG 2 cut(s) 12, 171
BtsCI GGATG 3 cut(s) 10, 222, 397
CciI TCATGA 1 cut(s) 465
CfoI GCGC 2 cut(s) 385, 477
Cfr10I RCCGGY 1 cut(s) 176
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 4 cut(s) 88, 172, 466, 498
DdeI CTNAG 3 cut(s) 333, 387, 432
DpnI GATC 5 cut(s) 55, 66, 164, 203, 464
DpnII GATC 5 cut(s) 53, 64, 162, 201, 462
EaeI YGGCCR 2 cut(s) 174, 369
Eam1104I CTCTTC 2 cut(s) 335, 459
EarI CTCTTC 2 cut(s) 335, 459
Ecl136II GAGCTC 1 cut(s) 312
Eco130I CCWWGG 2 cut(s) 171, 188
Eco24I GRGCYC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 495
Eco72I CACGTG 1 cut(s) 26
Eco81I CCTNAGG 1 cut(s) 387
Eco88I CYCGRG 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 312
EcoRII CCWGG 2 cut(s) 158, 282
EcoT14I CCWWGG 2 cut(s) 171, 188
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 2 cut(s) 171, 188
FaeI CATG 4 cut(s) 91, 175, 469, 501
FaiI YATR 7 cut(s) 89, 173, 420, 467, 499, 540, 562
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 4 cut(s) 87, 171, 465, 497
Fnu4HI GCNGC 5 cut(s) 18, 21, 104, 168, 369
FokI GGATG 3 cut(s) 17, 229, 404
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 5 cut(s) 18, 21, 104, 168, 369
FspBI CTAG 1 cut(s) 260
GlaI GCGC 2 cut(s) 384, 476
GluI GCNGC 5 cut(s) 18, 21, 104, 168, 369
GsaI CCCAGC 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 478
HaeIII GGCC 2 cut(s) 176, 371
HapII CCGG 1 cut(s) 177
HhaI GCGC 2 cut(s) 385, 477
Hin1II CATG 4 cut(s) 91, 175, 469, 501
Hin6I GCGC 2 cut(s) 383, 475
HinP1I GCGC 2 cut(s) 383, 475
HinfI GANTC 2 cut(s) 81, 350
HpaII CCGG 1 cut(s) 177
HphI GGTGA 2 cut(s) 217, 301
Hpy188I TCNGA 3 cut(s) 47, 58, 133
Hpy188III TCNNGA 3 cut(s) 211, 458, 466
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 519
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 3 cut(s) 25, 75, 150
HpyCH4V TGCA 3 cut(s) 20, 41, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 173, 329
HpyF3I CTNAG 3 cut(s) 333, 387, 432
HpySE526I ACGT 3 cut(s) 25, 75, 150
Hsp92II CATG 4 cut(s) 91, 175, 469, 501
HspAI GCGC 2 cut(s) 383, 475
Kzo9I GATC 5 cut(s) 53, 64, 162, 201, 462
LmnI GCTCC 3 cut(s) 241, 309, 436
Lsp1109I GCAGC 2 cut(s) 4, 32
MaeI CTAG 1 cut(s) 260
MaeII ACGT 3 cut(s) 25, 75, 150
MaeIII GTNAC 1 cut(s) 223
MalI GATC 5 cut(s) 55, 66, 164, 203, 464
MboI GATC 5 cut(s) 53, 64, 162, 201, 462
MboII GAAGA 2 cut(s) 352, 446
MfeI CAATTG 1 cut(s) 425
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 4 cut(s) 292, 425, 484, 517
MmeI TCCRAC 2 cut(s) 25, 111
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 160, 284
MunI CAATTG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 2 cut(s) 160, 284
MwoI GCNNNNNNNGC 3 cut(s) 144, 173, 329
NcoI CCATGG 1 cut(s) 171
NdeII GATC 5 cut(s) 53, 64, 162, 201, 462
NlaIII CATG 4 cut(s) 91, 175, 469, 501
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 194
PagI TCATGA 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 81, 350
PkrI GCNGC 5 cut(s) 19, 22, 105, 169, 370
Ple19I CGATCG 1 cut(s) 56
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
Ppu21I YACGTR 2 cut(s) 26, 151
Psp124BI GAGCTC 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 158, 282
PspCI CACGTG 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 138
PspGI CCWGG 2 cut(s) 158, 282
PspN4I GGNNCC 1 cut(s) 10
PspXI VCTCGAGB 1 cut(s) 194
PstI CTGCAG 2 cut(s) 22, 43
PvuI CGATCG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 314
SatI GCNGC 5 cut(s) 18, 21, 104, 168, 369
Sau3AI GATC 5 cut(s) 53, 64, 162, 201, 462
ScrFI CCNGG 2 cut(s) 160, 284
SduI GDGCHC 1 cut(s) 314
SfcI CTRYAG 2 cut(s) 18, 39
Sfr274I CTCGAG 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 194
SmlI CTYRAG 4 cut(s) 194, 209, 458, 478
SmoI CTYRAG 4 cut(s) 194, 209, 458, 478
Sse9I AATT 4 cut(s) 292, 425, 484, 517
SsiI CCGC 5 cut(s) 104, 168, 257, 287, 368
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 158, 282
StyI CCWWGG 2 cut(s) 171, 188
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 3 cut(s) 28, 78, 153
TaqI TCGA 4 cut(s) 63, 195, 353, 570
TasI AATT 4 cut(s) 292, 425, 484, 517
TauI GCSGC 3 cut(s) 106, 170, 371
TfiI GAWTC 2 cut(s) 81, 350
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 17, 20
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 4 cut(s) 73, 255, 510, 523
XapI RAATTY 2 cut(s) 292, 484
XhoI CTCGAG 1 cut(s) 194
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.