Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002882.1

Orthogroup ID

OG0006424

Physical Location & Seq

Genomic Coordinates Forward (+)

4989 .. 5818

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ctgtctctccctcaacgcacaggcggatctacaacctatcatcctttccctcttctctcggttcgacgccttcaccaaacacacgcacttgaagctctcatctcgctgcggtgccggaacctcaagcacctgaagctccgtgcgtgcctcgagttgaccgacgcgggcatgctggcatccaagaagaactgcaagggtttgaagaagctctcctgtggatcatacaccttcggagccaaaggaatgaacgtcgtgctggaaaattgcttggcccaggaagagttatcagtgaagcggctccgtggtatttgggtcggacggtgtcctgacgggtggaagtcaaaccgtgtgggaaatggaggtttgatttcagtggccaagagttgccctaaccttcaggaattggttcttatcgacgtgaacctaaccaaagcgagcttggacaagttggcaacgaattgccccaatctggagaggttggcattgtgcaggagcaataatatgtttattggaggcaataaaatcggacaccggaatccggtcacccgtcaggtagctggattcctgattcacgtcaccagagtccgctgccggtcacctgtcaccggagtcctgcgaggtctccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

209

Amino Acids

22.98

Weight (kDa)

10.35

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	125 - 167	7.5e-06	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006424)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462581
rosa_laevigata	RLG00000017278
rosa_multiflora	Rmu_sc0000131.1_g000003 Rmu_sc0001878.1_g000009 Rmu_sc0002535.1_g000043 Rmu_sc0002882.1_g000002 Rmu_sc0003624.1_g000024 Rmu_sc0004368.1_g000020 Rmu_sc0006173.1_g000034 Rmu_sc0007069.1_g000001 Rmu_sc0008769.1_g000019 Rmu_sc0009999.1_g000001 Rmu_sc0011951.1_g000011 Rmu_sc0014067.1_g000007 Rmu_ssc0000278.1_g000011
rosa_roxburghii	Rroxscaffold_1G00029870 Rroxscaffold_1G00036950 Rroxscaffold_3G00245630
rosa_samantha	Rh3BG119300 Rh3DG121400 Rh5BG126400 Rh5BG245600 Rh5CG377300 Rh5CG481900 Rh5DG254300 Rh6DG193900 Rh7BG174200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	111
AccII	CGCG	1 cut(s)	164
AciI	CCGC	5 cut(s)	24, 109, 164, 295, 586
AclWI	GGATC	2 cut(s)	34, 226
AcoI	YGGCCR	1 cut(s)	375
AcuI	CTGAAG	2 cut(s)	152, 380
AcyI	GRCGYC	1 cut(s)	67
AfiI	CCNNNNNNNGG	3 cut(s)	469, 538, 605
AgsI	TTSAA	2 cut(s)	92, 202
AjiI	CACGTC	2 cut(s)	418, 574
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	5 cut(s)	95, 136, 208, 438, 557
AluI	AGCT	5 cut(s)	95, 136, 208, 438, 557
Alw26I	GTCTC	2 cut(s)	9, 626
AlwI	GGATC	2 cut(s)	34, 226
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	2 cut(s)	270, 375
ApeKI	GCWGC	2 cut(s)	106, 588
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	5 cut(s)	65, 535, 568, 588, 595
AvaI	CYCGRG	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	111
BbvI	GCAGC	2 cut(s)	93, 575
BcgI	CGANNNNNNTGC	2 cut(s)	505, 539
BciT130I	CCWGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	9, 626
BisI	GCNGC	3 cut(s)	107, 296, 589
BlsI	GCNGC	3 cut(s)	108, 297, 590
Bme1390I	CCNGG	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	149
BmgBI	CACGTC	2 cut(s)	418, 574
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	4 cut(s)	113, 119, 235, 299
BmrFI	CCNGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	273, 301
BsaWI	WCCGGW	3 cut(s)	531, 538, 605
Bsc4I	CCNNNNNNNGG	3 cut(s)	469, 538, 605
Bse118I	RCCGGY	1 cut(s)	591
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	273, 301
BseGI	GGATG	2 cut(s)	40, 176
BseLI	CCNNNNNNNGG	3 cut(s)	469, 538, 605
BseXI	GCAGC	2 cut(s)	93, 575
BsgI	GTGCAG	1 cut(s)	508
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	272, 377
BshNI	GGYRCC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	5 cut(s)	115, 532, 539, 592, 606
BslI	CCNNNNNNNGG	3 cut(s)	469, 538, 605
BsmAI	GTCTC	2 cut(s)	9, 626
BsnI	GGCC	2 cut(s)	272, 377
Bso31I	GGTCTC	1 cut(s)	626
BsoBI	CYCGRG	1 cut(s)	149
Bsp143I	GATC	2 cut(s)	26, 218
BspACI	CCGC	5 cut(s)	24, 109, 164, 295, 586
BspANI	GGCC	2 cut(s)	272, 377
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	4 cut(s)	113, 119, 235, 299
BspPI	GGATC	2 cut(s)	34, 226
BspT107I	GGYRCC	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	626
BsrFI	RCCGGY	1 cut(s)	591
BssAI	RCCGGY	1 cut(s)	591
BssECI	CCNNGG	2 cut(s)	273, 301
BssMI	GATC	2 cut(s)	26, 218
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	321, 347
Bst6I	CTCTTC	2 cut(s)	57, 273
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	5 cut(s)	145, 166, 170, 174, 436
BstDSI	CCRYGG	1 cut(s)	301
BstEII	GGTNACC	2 cut(s)	541, 594
BstF5I	GGATG	2 cut(s)	40, 176
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	2 cut(s)	29, 221
BstMAI	GTCTC	2 cut(s)	9, 626
BstMBI	GATC	2 cut(s)	26, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 133
BstNI	CCWGG	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	172
BstPI	GGTNACC	2 cut(s)	541, 594
BstSCI	CCNGG	1 cut(s)	273
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	93, 575
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	272, 377
BtgI	CCRYGG	1 cut(s)	301
BtrI	CACGTC	2 cut(s)	418, 574
BtsCI	GGATG	2 cut(s)	40, 176
BtsIMutI	CAGTG	2 cut(s)	294, 378
Cac8I	GCNNGC	5 cut(s)	145, 166, 170, 174, 436
Cfr10I	RCCGGY	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	2 cut(s)	75, 170
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	9 cut(s)	95, 136, 208, 236, 272, 298, 377, 438, 557
CviKI_1	RGCY	9 cut(s)	95, 136, 208, 236, 272, 298, 377, 438, 557
DpnI	GATC	2 cut(s)	28, 220
DpnII	GATC	2 cut(s)	26, 218
EaeI	YGGCCR	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	57, 273
EarI	CTCTTC	2 cut(s)	57, 273
EciI	GGCGGA	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	626
Eco57I	CTGAAG	2 cut(s)	152, 380
Eco88I	CYCGRG	1 cut(s)	149
Eco91I	GGTNACC	2 cut(s)	541, 594
EcoO65I	GGTNACC	2 cut(s)	541, 594
EcoRII	CCWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	170, 223, 503
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	107, 296, 589
FokI	GGATG	2 cut(s)	27, 163
Fsp4HI	GCNGC	3 cut(s)	107, 296, 589
GluI	GCNGC	3 cut(s)	107, 296, 589
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	2 cut(s)	272, 377
HapII	CCGG	5 cut(s)	115, 532, 539, 592, 606
HgaI	GACGC	2 cut(s)	75, 170
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	5 cut(s)	535, 561, 568, 582, 609
HpaII	CCGG	5 cut(s)	115, 532, 539, 592, 606
HphI	GGTGA	5 cut(s)	65, 535, 568, 588, 595
Hpy166II	GTNNAC	2 cut(s)	156, 421
Hpy188I	TCNGA	4 cut(s)	233, 317, 527, 626
Hpy188III	TCNNGA	4 cut(s)	326, 398, 470, 565
Hpy8I	GTNNAC	2 cut(s)	156, 421
Hpy99I	CGWCG	4 cut(s)	69, 164, 254, 419
HpyAV	CCTTC	3 cut(s)	80, 238, 404
HpyCH4III	ACNGT	2 cut(s)	321, 347
HpyCH4IV	ACGT	3 cut(s)	249, 417, 573
HpyCH4V	TGCA	2 cut(s)	192, 489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 133
HpySE526I	ACGT	3 cut(s)	249, 417, 573
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	26, 218
LmnI	GCTCC	4 cut(s)	141, 233, 303, 492
Lsp1109I	GCAGC	2 cut(s)	93, 575
LweI	GCATC	1 cut(s)	185
MaeII	ACGT	3 cut(s)	249, 417, 573
MaeIII	GTNAC	4 cut(s)	541, 574, 594, 601
MalI	GATC	2 cut(s)	28, 220
MboI	GATC	2 cut(s)	26, 218
MboII	GAAGA	4 cut(s)	44, 196, 214, 290
MflI	RGATCY	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	377
MluCI	AATT	3 cut(s)	262, 401, 457
MluNI	TGGCCA	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	591, 618
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	8 cut(s)	21, 60, 131, 158, 353, 468, 506, 611
Mox20I	TGGCCA	1 cut(s)	377
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	588
MspI	CCGG	5 cut(s)	115, 532, 539, 592, 606
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	92, 133
NdeII	GATC	2 cut(s)	26, 218
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	4 cut(s)	113, 119, 235, 299
NmuCI	GTSAC	4 cut(s)	541, 574, 594, 601
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PaeR7I	CTCGAG	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	535, 561, 568
PflFI	GACNNNGTC	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	108, 297, 590
PleI	GAGTC	2 cut(s)	590, 617
PpsI	GAGTC	2 cut(s)	590, 617
Psp6I	CCWGG	1 cut(s)	273
PspEI	GGTNACC	2 cut(s)	541, 594
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	4 cut(s)	113, 119, 235, 299
PspPI	GGNCC	1 cut(s)	271
PspXI	VCTCGAGB	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	321
SatI	GCNGC	3 cut(s)	107, 296, 589
Sau3AI	GATC	2 cut(s)	26, 218
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	2 cut(s)	591, 618
ScrFI	CCNGG	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	185
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	122, 149
SmoI	CTYRAG	2 cut(s)	122, 149
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	3 cut(s)	262, 401, 457
SsiI	CCGC	5 cut(s)	24, 109, 164, 295, 586
StyD4I	CCNGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	321, 347
TaiI	ACGT	3 cut(s)	252, 420, 576
TaqI	TCGA	3 cut(s)	64, 150, 414
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	3 cut(s)	262, 401, 457
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	3 cut(s)	535, 561, 568
TscAI	CASTG	2 cut(s)	294, 378
TseFI	GTSAC	4 cut(s)	541, 574, 594, 601
TseI	GCWGC	2 cut(s)	106, 588
Tsp45I	GTSAC	4 cut(s)	541, 574, 594, 601
TspDTI	ATGAA	1 cut(s)	260
TspGWI	ACGGA	2 cut(s)	128, 290
TspRI	CASTG	2 cut(s)	294, 378
Tth111I	GACNNNGTC	1 cut(s)	321
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.