Rmu_sc0003260.1_g000026

WD repeat-containing protein C2A9.03-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003260.1
OG0002709
Physical Location & Seq
Reverse (-)
114462 .. 117967
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 930 bp
atgcgtcttgataaagaaggagtgagtttttgtacgcgaaccacatacgatgacaatgccatcacaaatgctgttgaaatatatgatagcctggggggtggaatgcatttcatggcatccaataatgattgtggtataagagaatatgacatggagagatttcagcttctgaatcactttcgattcccctggccagtgaatcatacatcaataagcccagatcgtagggttgttgccgtagttggagatcacgtggatggattgcttatggattctcagaatggaaagactattgctaaggttgttggtcatctagattactcctttgcttctgcatggcatcctgatggccgcatatttgccaccggaaatcaggacaagacttcccgagtttgggatataagaaatctttcatcacccattgcagttctgaagaataacttgggtgctactcggtctattcggttttcatcagatggaccagaattagagtctggtgaagtactgagaaatcaatggggcatgcctactccagcccactgccgtcgatcgcaaagccgccgcggcctcagaacccgattcgccgtcgccgatgacgtcttgagttttttcgatccacaccatgagtttcatcttcgcaaacagaaaacccccgcaggtaaaataggaggcattgctgtggttgatttggatcgagagaggaaagggatggagtctaggatggatcagtatgagctgatggagcagatcggccggggagctttgggagccgcgattttggttcatcacaaggctgagaagaagaagtatgtgttgaagaagatccggcttgcgaggcagacggagcggtgctggagatctgctcatcaagagatggctcttattgctcggattcagcacccgtacattgtggaatttaaggaactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

309

Amino Acids

35.2

Weight (kDa)

9.24

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 34 - 164 1.5e-12 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 36 - 161 4.7e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 37 - 165 6.8e-07 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 38 - 164 1.2e-09 WDR5 beta-propeller domain
WD40_Prp19 PF24814 65 - 166 4.5e-12 Prp19 WD40 domain
Pkinase PF00069 244 - 308 2.2e-09 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 600
Acc36I ACCTGC 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 847
AccII CGCG 3 cut(s) 37, 564, 773
AciI CCGC 7 cut(s) 352, 559, 562, 564, 654, 771, 847
AclWI GGATC 4 cut(s) 608, 699, 732, 817
AcoI YGGCCR 3 cut(s) 191, 349, 751
AcsI RAATTY 1 cut(s) 914
AcuI CTGAAG 1 cut(s) 452
AcvI CACGTG 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 597
AfaI GTAC 3 cut(s) 34, 504, 905
AfiI CCNNNNNNNGG 2 cut(s) 393, 394
AgsI TTSAA 2 cut(s) 77, 817
AjnI CCWGG 2 cut(s) 90, 188
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 3 cut(s) 166, 736, 761
AluI AGCT 3 cut(s) 166, 736, 761
AlwI GGATC 4 cut(s) 608, 699, 732, 817
AlwNI CAGNNNCTG 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 4 cut(s) 191, 349, 565, 751
ApoI RAATTY 1 cut(s) 914
Asp700I GAANNNNTTC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 479
AsuC2I CCSGG 1 cut(s) 755
AsuHPI GGTGA 2 cut(s) 408, 509
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 1 cut(s) 479
BalI TGGCCA 1 cut(s) 193
BbrPI CACGTG 1 cut(s) 253
BccI CCATC 8 cut(s) 68, 251, 341, 470, 703, 715, 733, 868
BceAI ACGGC 3 cut(s) 221, 528, 569
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 2 cut(s) 92, 190
BcnI CCSGG 1 cut(s) 755
BfaI CTAG 2 cut(s) 314, 717
BfuAI ACCTGC 1 cut(s) 647
BglI GCCNNNNNGGC 1 cut(s) 564
BglII AGATCT 1 cut(s) 857
BisI GCNGC 5 cut(s) 352, 559, 562, 565, 771
BlsI GCNGC 5 cut(s) 353, 560, 563, 566, 772
BmcAI AGTACT 1 cut(s) 504
Bme1390I CCNGG 3 cut(s) 92, 190, 755
Bme18I GGWCC 1 cut(s) 479
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 769
BmrFI CCNGG 3 cut(s) 92, 190, 755
BmsI GCATC 2 cut(s) 125, 349
BplI GAGNNNNNCTC 2 cut(s) 847, 879
BpmI CTGGAG 2 cut(s) 516, 874
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 622
BpuMI CCSGG 1 cut(s) 755
BsaAI YACGTR 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 597
BsaJI CCNNGG 4 cut(s) 91, 188, 562, 754
BsaWI WCCGGW 1 cut(s) 365
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 394
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 2 cut(s) 420, 672
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 2 cut(s) 92, 190
BseDI CCNNGG 4 cut(s) 91, 188, 562, 754
BseGI GGATG 5 cut(s) 116, 262, 340, 714, 726
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 2 cut(s) 393, 394
BseMI GCAATG 2 cut(s) 420, 672
BseMII CTCAG 4 cut(s) 290, 497, 583, 786
BseNI ACTGG 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 751
Bsh1236I CGCG 3 cut(s) 37, 564, 773
Bsh1285I CGRYCG 2 cut(s) 551, 754
BshFI GGCC 4 cut(s) 193, 351, 567, 753
BsiEI CGRYCG 2 cut(s) 551, 754
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 3 cut(s) 366, 754, 826
BslI CCNNNNNNNGG 2 cut(s) 393, 394
BsmI GAATGC 1 cut(s) 108
BsnI GGCC 4 cut(s) 193, 351, 567, 753
BsoBI CYCGRG 1 cut(s) 387
Bsp143I GATC 9 cut(s) 220, 247, 548, 613, 691, 724, 747, 822, 857
BspACI CCGC 7 cut(s) 352, 559, 562, 564, 654, 771, 847
BspANI GGCC 4 cut(s) 193, 351, 567, 753
BspCNI CTCAG 4 cut(s) 289, 498, 582, 787
BspFNI CGCG 3 cut(s) 37, 564, 773
BspLI GGNNCC 1 cut(s) 769
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 4 cut(s) 608, 699, 732, 817
BsrBI CCGCTC 1 cut(s) 847
BsrDI GCAATG 2 cut(s) 420, 672
BsrI ACTGG 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 91, 188, 562, 754
BssMI GATC 9 cut(s) 220, 247, 548, 613, 691, 724, 747, 822, 857
BssNI GRCGYC 1 cut(s) 597
Bst2UI CCWGG 2 cut(s) 92, 190
BstACI GRCGYC 1 cut(s) 597
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 524, 831
BstDEI CTNAG 5 cut(s) 276, 297, 506, 569, 795
BstDSI CCRYGG 1 cut(s) 562
BstF5I GGATG 5 cut(s) 116, 262, 340, 714, 726
BstFNI CGCG 3 cut(s) 37, 564, 773
BstKTI GATC 9 cut(s) 223, 250, 551, 616, 694, 727, 750, 825, 860
BstMBI GATC 9 cut(s) 220, 247, 548, 613, 691, 724, 747, 822, 857
BstMCI CGRYCG 2 cut(s) 551, 754
BstMWI GCNNNNNNNGC 6 cut(s) 564, 742, 767, 835, 844, 884
BstNI CCWGG 2 cut(s) 92, 190
BstNSI RCATGY 1 cut(s) 526
BstSCI CCNGG 3 cut(s) 90, 188, 753
BstUI CGCG 3 cut(s) 37, 564, 773
BstX2I RGATCY 2 cut(s) 822, 857
BstYI RGATCY 2 cut(s) 822, 857
BstZI CGGCCG 1 cut(s) 751
BsuRI GGCC 4 cut(s) 193, 351, 567, 753
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 5 cut(s) 116, 262, 340, 714, 726
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 2 cut(s) 201, 538
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 2 cut(s) 524, 831
CaiI CAGNNNCTG 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 479
Cfr42I CCGCGG 1 cut(s) 565
Csp6I GTAC 3 cut(s) 33, 503, 904
CviAII CATG 5 cut(s) 112, 151, 336, 523, 623
CviQI GTAC 3 cut(s) 33, 503, 904
DdeI CTNAG 5 cut(s) 276, 297, 506, 569, 795
DpnI GATC 9 cut(s) 222, 249, 550, 615, 693, 726, 749, 824, 859
DpnII GATC 9 cut(s) 220, 247, 548, 613, 691, 724, 747, 822, 857
EaeI YGGCCR 3 cut(s) 191, 349, 751
EagI CGGCCG 1 cut(s) 751
EclXI CGGCCG 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 479
Eco52I CGGCCG 1 cut(s) 751
Eco57I CTGAAG 1 cut(s) 452
Eco72I CACGTG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 387
EcoRII CCWGG 2 cut(s) 90, 188
EcoT22I ATGCAT 1 cut(s) 108
FaeI CATG 5 cut(s) 115, 154, 339, 526, 626
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FatI CATG 5 cut(s) 111, 150, 335, 522, 622
FauI CCCGC 1 cut(s) 661
Fnu4HI GCNGC 5 cut(s) 352, 559, 562, 565, 771
FokI GGATG 5 cut(s) 103, 269, 327, 721, 733
Fsp4HI GCNGC 5 cut(s) 352, 559, 562, 565, 771
FspBI CTAG 2 cut(s) 314, 717
GluI GCNGC 5 cut(s) 352, 559, 562, 565, 771
GsuI CTGGAG 2 cut(s) 516, 874
HaeIII GGCC 4 cut(s) 193, 351, 567, 753
HapII CCGG 3 cut(s) 366, 754, 826
Hin1I GRCGYC 1 cut(s) 597
Hin1II CATG 5 cut(s) 115, 154, 339, 526, 626
HinfI GANTC 8 cut(s) 172, 183, 199, 272, 491, 579, 713, 892
HpaII CCGG 3 cut(s) 366, 754, 826
HphI GGTGA 2 cut(s) 408, 509
Hpy188I TCNGA 6 cut(s) 171, 279, 432, 475, 572, 891
Hpy188III TCNNGA 8 cut(s) 8, 314, 344, 374, 387, 601, 695, 869
Hpy99I CGWCG 2 cut(s) 549, 590
HpyAV CCTTC 1 cut(s) 11
HpyCH4IV ACGT 2 cut(s) 252, 597
HpyCH4V TGCA 3 cut(s) 106, 335, 425
HpyF10VI GCNNNNNNNGC 6 cut(s) 564, 742, 767, 835, 844, 884
HpyF3I CTNAG 5 cut(s) 276, 297, 506, 569, 795
HpySE526I ACGT 2 cut(s) 252, 597
Hsp92I GRCGYC 1 cut(s) 597
Hsp92II CATG 5 cut(s) 115, 154, 339, 526, 626
KspI CCGCGG 1 cut(s) 565
Kzo9I GATC 9 cut(s) 220, 247, 548, 613, 691, 724, 747, 822, 857
LmnI GCTCC 4 cut(s) 742, 758, 767, 844
LweI GCATC 2 cut(s) 125, 349
MaeI CTAG 2 cut(s) 314, 717
MaeII ACGT 2 cut(s) 252, 597
MalI GATC 9 cut(s) 222, 249, 550, 615, 693, 726, 749, 824, 859
MbiI CCGCTC 1 cut(s) 847
MboI GATC 9 cut(s) 220, 247, 548, 613, 691, 724, 747, 822, 857
MboII GAAGA 6 cut(s) 445, 626, 811, 814, 829, 832
MflI RGATCY 2 cut(s) 822, 857
MlsI TGGCCA 1 cut(s) 193
MluCI AATT 2 cut(s) 485, 914
MluNI TGGCCA 1 cut(s) 193
MlyI GAGTC 2 cut(s) 500, 722
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 4 cut(s) 578, 662, 693, 828
Mox20I TGGCCA 1 cut(s) 193
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 409
MscI TGGCCA 1 cut(s) 193
MseI TTAA 1 cut(s) 918
MslI CAYNNNNRTG 3 cut(s) 255, 345, 677
Msp20I TGGCCA 1 cut(s) 193
MspA1I CMGCKG 1 cut(s) 564
MspI CCGG 3 cut(s) 366, 754, 826
MspR9I CCNGG 3 cut(s) 92, 190, 755
Mva1269I GAATGC 1 cut(s) 108
MvaI CCWGG 2 cut(s) 92, 190
MvnI CGCG 3 cut(s) 37, 564, 773
MwoI GCNNNNNNNGC 6 cut(s) 564, 742, 767, 835, 844, 884
NciI CCSGG 1 cut(s) 755
NdeII GATC 9 cut(s) 220, 247, 548, 613, 691, 724, 747, 822, 857
NlaIII CATG 5 cut(s) 115, 154, 339, 526, 626
NlaIV GGNNCC 1 cut(s) 769
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 526
PaeI GCATGC 1 cut(s) 526
PcsI WCGNNNNNNNCGW 2 cut(s) 588, 594
PctI GAATGC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 409
PfeI GAWTC 6 cut(s) 172, 183, 199, 272, 579, 892
PkrI GCNGC 5 cut(s) 353, 560, 563, 566, 772
Ple19I CGATCG 1 cut(s) 551
PleI GAGTC 2 cut(s) 499, 721
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 2 cut(s) 499, 721
Ppu21I YACGTR 1 cut(s) 253
Psp6I CCWGG 2 cut(s) 90, 188
PspCI CACGTG 1 cut(s) 253
PspGI CCWGG 2 cut(s) 90, 188
PspN4I GGNNCC 1 cut(s) 769
PspPI GGNCC 1 cut(s) 479
PstNI CAGNNNCTG 1 cut(s) 169
PsuI RGATCY 2 cut(s) 822, 857
PvuI CGATCG 1 cut(s) 551
RsaI GTAC 3 cut(s) 34, 504, 905
RsaNI GTAC 3 cut(s) 33, 503, 904
RseI CAYNNNNRTG 3 cut(s) 255, 345, 677
SacII CCGCGG 1 cut(s) 565
SaqAI TTAA 1 cut(s) 918
SatI GCNGC 5 cut(s) 352, 559, 562, 565, 771
Sau3AI GATC 9 cut(s) 220, 247, 548, 613, 691, 724, 747, 822, 857
Sau96I GGNCC 1 cut(s) 479
ScaI AGTACT 1 cut(s) 504
SchI GAGTC 2 cut(s) 500, 722
ScrFI CCNGG 3 cut(s) 92, 190, 755
SetI ASST 7 cut(s) 168, 255, 303, 600, 661, 738, 763
SfaNI GCATC 2 cut(s) 125, 349
Sfr303I CCGCGG 1 cut(s) 565
SgrBI CCGCGG 1 cut(s) 565
SinI GGWCC 1 cut(s) 479
SmiMI CAYNNNNRTG 3 cut(s) 255, 345, 677
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
SphI GCATGC 1 cut(s) 526
Sse9I AATT 2 cut(s) 485, 914
SsiI CCGC 7 cut(s) 352, 559, 562, 564, 654, 771, 847
SspMI CTAG 2 cut(s) 314, 717
StyD4I CCNGG 3 cut(s) 90, 188, 753
TaiI ACGT 2 cut(s) 255, 600
TaqI TCGA 4 cut(s) 181, 547, 612, 694
TaqII GACCGA 1 cut(s) 444
TasI AATT 2 cut(s) 485, 914
TatI WGTACW 1 cut(s) 502
TauI GCSGC 5 cut(s) 354, 561, 564, 567, 773
TfiI GAWTC 6 cut(s) 172, 183, 199, 272, 579, 892
Tru1I TTAA 1 cut(s) 918
Tru9I TTAA 1 cut(s) 918
TscAI CASTG 2 cut(s) 201, 545
TspDTI ATGAA 5 cut(s) 100, 402, 459, 620, 773
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 2 cut(s) 201, 545
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 1 cut(s) 914
XbaI TCTAGA 1 cut(s) 313
XceI RCATGY 1 cut(s) 526
XmnI GAANNNNTTC 1 cut(s) 409
XspI CTAG 2 cut(s) 314, 717
ZraI GACGTC 1 cut(s) 598
ZrmI AGTACT 1 cut(s) 504
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.