Rmu_sc0003277.1_g000001

Quinone oxidoreductase-like protein 2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003277.1
OG0004349
Physical Location & Seq
Forward (+)
6937 .. 7649
713 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
atgagcttaaactacgccaattacctgcagatacttggcaagtaccaagagaagtcgcctctgcctttcatcttcggcttcgattacttcggcgtcgtctatgccgtcggccccgccgtctccaagtttaaagtcagcgatgctgtttgctccgtcaccgccctcgggtccttttctcaattcatcgtcgtcgatcagtcacttctgtttggagtgtcggaagggtgtggtctggtggctgctggtgcactgccggttgcatttaggacctctcatgtggctcttcttcaccaggccaatttgagctccggtcaagtattgctggtgcttggtgcagctggaggtggtggacttgcggtggtgcaaattggaaaggttgttggagccgttgttattgtagtagctaggggagctgagaaggtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N

Protein Analysis

141

Amino Acids

14.45

Weight (kDa)

8.62

Isoelectric Point (pI)

29.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 2 - 70 1.6e-07 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AciI CCGC 3 cut(s) 114, 159, 356
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 165
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 5 cut(s) 6, 306, 338, 404, 413
AluI AGCT 5 cut(s) 6, 306, 338, 404, 413
Alw21I GWGCWC 2 cut(s) 250, 308
Alw26I GTCTC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 109, 294
ApaLI GTGCAC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 239, 335
AspS9I GGNCC 3 cut(s) 110, 168, 267
AsuHPI GGTGA 2 cut(s) 148, 281
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 168, 267
BaeGI GKGCMC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 250, 308
BbvI GCAGC 2 cut(s) 226, 347
BceAI ACGGC 3 cut(s) 89, 101, 371
BciT130I CCWGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 26
BfuAI ACCTGC 1 cut(s) 33
BisI GCNGC 2 cut(s) 240, 336
BlsI GCNGC 2 cut(s) 241, 337
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 168, 267
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 110, 168, 267
BmiI GGNNCC 3 cut(s) 112, 169, 385
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 163
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 253
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 250
BseXI GCAGC 2 cut(s) 226, 347
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 111, 296
BsiHKAI GWGCWC 2 cut(s) 250, 308
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 254, 309
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsnI GGCC 2 cut(s) 111, 296
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 250, 308
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 3 cut(s) 114, 159, 356
BspANI GGCC 2 cut(s) 111, 296
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 112, 169, 385
BspMAI CTGCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 33
BspQI GCTCTTC 1 cut(s) 288
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 414
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 245, 410
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 26
BstSLI GKGCMC 1 cut(s) 250
BstV1I GCAGC 2 cut(s) 226, 347
BsuRI GGCC 2 cut(s) 111, 296
BtgZI GCGATG 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 3 cut(s) 110, 168, 267
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 275
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 414
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraI TTTAAA 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 168, 267
Eco53kI GAGCTC 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 306
EcoO109I RGGNCCY 2 cut(s) 168, 267
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 1 cut(s) 278
FaiI YATR 2 cut(s) 102, 276
FatI CATG 1 cut(s) 274
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 240, 336
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 240, 336
FspBI CTAG 1 cut(s) 405
GluI GCNGC 2 cut(s) 240, 336
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 2 cut(s) 111, 296
HapII CCGG 2 cut(s) 254, 309
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 1 cut(s) 278
HpaII CCGG 2 cut(s) 254, 309
HphI GGTGA 2 cut(s) 148, 281
Hpy166II GTNNAC 2 cut(s) 248, 350
Hpy188I TCNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 248, 350
Hpy99I CGWCG 4 cut(s) 98, 110, 191, 194
HpyAV CCTTC 2 cut(s) 215, 412
HpyCH4V TGCA 5 cut(s) 28, 248, 260, 335, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 410
HpyF3I CTNAG 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 1 cut(s) 193
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 4 cut(s) 155, 311, 383, 410
LpnPI CCDG 9 cut(s) 38, 218, 228, 267, 278, 305, 308, 322, 324
Lsp1109I GCAGC 2 cut(s) 226, 347
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 154, 198
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 3 cut(s) 64, 275, 278
MhlI GDGCHC 2 cut(s) 250, 308
MluCI AATT 4 cut(s) 19, 179, 298, 366
MmeI TCCRAC 2 cut(s) 198, 361
MnlI CCTC 4 cut(s) 69, 173, 280, 335
MseI TTAA 2 cut(s) 8, 129
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 2 cut(s) 254, 309
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 245, 410
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 3 cut(s) 112, 169, 385
NmuCI GTSAC 2 cut(s) 154, 198
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 114
PkrI GCNGC 2 cut(s) 241, 337
PpuMI RGGWCCY 2 cut(s) 168, 267
Psp124BI GAGCTC 1 cut(s) 308
Psp5II RGGWCCY 2 cut(s) 168, 267
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 3 cut(s) 112, 169, 385
PspPI GGNCC 3 cut(s) 110, 168, 267
PspPPI RGGWCCY 2 cut(s) 168, 267
PstI CTGCAG 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SacI GAGCTC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 8, 129
SatI GCNGC 2 cut(s) 240, 336
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 3 cut(s) 110, 168, 267
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 2 cut(s) 250, 308
SfaNI GCATC 1 cut(s) 130
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 2 cut(s) 168, 267
Sse9I AATT 4 cut(s) 19, 179, 298, 366
SsiI CCGC 3 cut(s) 114, 159, 356
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 291
TaqI TCGA 2 cut(s) 81, 192
TasI AATT 4 cut(s) 19, 179, 298, 366
Tru1I TTAA 2 cut(s) 8, 129
Tru9I TTAA 2 cut(s) 8, 129
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 2 cut(s) 154, 198
TseI GCWGC 2 cut(s) 239, 335
Tsp45I GTSAC 2 cut(s) 154, 198
TspDTI ATGAA 2 cut(s) 58, 172
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 246
VpaK11BI GGWCC 2 cut(s) 168, 267
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.