Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003363.1

Orthogroup ID

OG0005075

Physical Location & Seq

Genomic Coordinates Reverse (-)

222440 .. 227856

Gene Structure 5417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgtctatcggccgcaagcggtgtgccgtcgacgacgagcccagcccggacctggtcatgagtctgcaccgaagcaaagcaaaagcagcggaggttgaagacgacgaggacgacatggttctgtcacagaggcttcacgaggcattcaaaggcaccgtggagaaaatcacagggcctcgcaccgtctccgctttcaaagagaaaggcgtcctcagcgtctccgagttcgtcaccgccggcgataacctcgtctccaagtgccctacctggtcttgggaatccggagagccaagcaagaggaagccatacctaccatctgaaaagcagtatttgattactagaaatgtcccttgtttacgcagggctgcttgtgtggaagaggagtatgaagctgcaggttcggaagttcttatcgataatgaagataatgatggctggttggcaacacacgggaagccaaagggtaactctctttttccttttaaaaagtgcggacgtcgctcctccggcctcgatcgaacggcgacggcgcggcgcggcttgccggagggacgccgggggtcgtgtggaggggtatgcggtgcggtggagtcgccggtgacggttctgcggtgctgcacagaacctgcaactgcaggtgaggtggctgcccagaaaccggcaagcccgacctcctccgacctcgaacgccgcccagaagaggtctgggacgcctccggcctccctccggccagccccgcgccgccgtcgtctcctggaaccctcctgctgcatcgacgtccgcactttagcgaagtgcggacgtccgcttcagaacccgcctctccagcagttgagcaattgaaagagattgtaaatgcgattgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000151 GO:0000153 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016043 GO:0016236 GO:0016740 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0044085 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071840 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko05167 map04136 map04138 map04140 map05167

Pfam Domains

Protein Families

Autophagy_C Autophagy_N Autophagy_act_C

Protein Analysis

289

Amino Acids

31.15

Weight (kDa)

6.05

Isoelectric Point (pI)

70.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	75 - 144	1.8e-12	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61500 AT5G61500
fragaria_vesca	FvH4_7g09530 FvH4_7g09530 FvH4_7g09530 FvH4_7g09530
malus_domestica	MD02G1218100.v1.1 MD07G1099000.v1.1 MD07G1099100.v1.1
prunus_persica	Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1 Prupe.2G123000_v2.0.a1
pyrus_communis	pycom1310g00040
rosa_chinensis	RchiOBHm_Chr1g0346321 RchiOBHm_Chr4g0385331
rosa_laevigata	RLG00000028805
rosa_multiflora	Rmu_co8505273.1_g000001 Rmu_sc0003363.1_g000042 Rmu_sc0003522.1_g000055
rosa_roxburghii	Rroxscaffold_4G00308710
rosa_rugosa	Rorug01G0179200 Rorug01G0179300 Rorug01G0179400 Rorug02G0522300 Rorug04G0105900
rosa_samantha	Rh1AG198600 Rh1BG164600 Rh1CG183900 Rh1DG195300
rosa_wichuraiana	Rw1G016690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	626
AatII	GACGTC	3 cut(s)	499, 781, 806
Acc36I	ACCTGC	3 cut(s)	386, 626, 634
AccB1I	GGYRCC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	3 cut(s)	532, 537, 740
AccIII	TCCGGA	1 cut(s)	281
AcoI	YGGCCR	2 cut(s)	10, 729
AcuI	CTGAAG	1 cut(s)	795
AcyI	GRCGYC	6 cut(s)	207, 496, 553, 711, 778, 803
AfiI	CCNNNNNNNGG	5 cut(s)	52, 273, 658, 700, 727
AgsI	TTSAA	4 cut(s)	98, 148, 196, 844
AjnI	CCWGG	3 cut(s)	51, 266, 754
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
Alw26I	GTCTC	4 cut(s)	190, 223, 256, 756
AlwNI	CAGNNNCTG	1 cut(s)	626
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	5 cut(s)	10, 173, 508, 718, 729
ApeKI	GCWGC	6 cut(s)	86, 365, 392, 615, 647, 769
AspLEI	GCGC	3 cut(s)	532, 537, 742
AspS9I	GGNCC	2 cut(s)	49, 173
AsuC2I	CCSGG	2 cut(s)	47, 557
AsuHPI	GGTGA	3 cut(s)	223, 610, 650
AvaII	GGWCC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	6 cut(s)	98, 352, 379, 602, 634, 756
BccI	CCATC	2 cut(s)	322, 425
BceAI	ACGGC	4 cut(s)	11, 537, 543, 730
BciT130I	CCWGG	3 cut(s)	53, 268, 756
BcnI	CCSGG	2 cut(s)	47, 557
BcoDI	GTCTC	4 cut(s)	190, 223, 256, 756
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	2 cut(s)	393, 633
BfuAI	ACCTGC	3 cut(s)	386, 626, 634
Bme1390I	CCNGG	5 cut(s)	47, 53, 268, 557, 756
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	49, 173
BmiI	GGNNCC	2 cut(s)	154, 760
BmrFI	CCNGG	5 cut(s)	47, 53, 268, 557, 756
BmsI	GCATC	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	105
BpmI	CTGGAG	1 cut(s)	810
Bpu10I	CCTNAGC	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	47, 557
Bsa29I	ATCGAT	1 cut(s)	414
BsaHI	GRCGYC	6 cut(s)	207, 496, 553, 711, 778, 803
BsaJI	CCNNGG	2 cut(s)	156, 556
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	5 cut(s)	52, 273, 658, 700, 727
Bse118I	RCCGGY	3 cut(s)	236, 595, 658
BseAI	TCCGGA	1 cut(s)	281
BseBI	CCWGG	3 cut(s)	53, 268, 756
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	156, 556
BseLI	CCNNNNNNNGG	5 cut(s)	52, 273, 658, 700, 727
BseMII	CTCAG	1 cut(s)	226
BseRI	GAGGAG	3 cut(s)	395, 493, 664
BseSI	GKGCMC	1 cut(s)	263
BseX3I	CGGCCG	1 cut(s)	10
BseXI	GCAGC	6 cut(s)	98, 352, 379, 602, 634, 756
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	2 cut(s)	50, 601
Bsh1236I	CGCG	3 cut(s)	532, 537, 740
Bsh1285I	CGRYCG	2 cut(s)	13, 517
BshFI	GGCC	5 cut(s)	12, 175, 510, 720, 731
BshNI	GGYRCC	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	414
BsiEI	CGRYCG	2 cut(s)	13, 517
BslFI	GGGAC	3 cut(s)	332, 564, 722
BslI	CCNNNNNNNGG	5 cut(s)	52, 273, 658, 700, 727
BsmAI	GTCTC	4 cut(s)	190, 223, 256, 756
BsmBI	CGTCTC	4 cut(s)	190, 223, 256, 756
BsmFI	GGGAC	3 cut(s)	332, 564, 722
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	12, 175, 510, 720, 731
Bsp1286I	GDGCHC	2 cut(s)	42, 263
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	514
BspANI	GGCC	5 cut(s)	12, 175, 510, 720, 731
BspCNI	CTCAG	1 cut(s)	225
BspDI	ATCGAT	1 cut(s)	414
BspEI	TCCGGA	1 cut(s)	281
BspFNI	CGCG	3 cut(s)	532, 537, 740
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	154, 760
BspMAI	CTGCAG	2 cut(s)	397, 637
BspMI	ACCTGC	3 cut(s)	386, 626, 634
BspT107I	GGYRCC	1 cut(s)	152
BsrFI	RCCGGY	3 cut(s)	236, 595, 658
BssAI	RCCGGY	3 cut(s)	236, 595, 658
BssECI	CCNNGG	2 cut(s)	156, 556
BssMI	GATC	1 cut(s)	514
BssNI	GRCGYC	6 cut(s)	207, 496, 553, 711, 778, 803
BssSI	CACGAG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	3 cut(s)	53, 268, 756
Bst4CI	ACNGT	3 cut(s)	157, 184, 604
Bst6I	CTCTTC	2 cut(s)	372, 693
BstACI	GRCGYC	6 cut(s)	207, 496, 553, 711, 778, 803
BstC8I	GCNNGC	5 cut(s)	17, 238, 542, 664, 733
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	156
BstFNI	CGCG	3 cut(s)	532, 537, 740
BstHHI	GCGC	3 cut(s)	532, 537, 742
BstKTI	GATC	1 cut(s)	517
BstMAI	GTCTC	4 cut(s)	190, 223, 256, 756
BstMBI	GATC	1 cut(s)	514
BstMCI	CGRYCG	2 cut(s)	13, 517
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 213, 498, 507, 541, 737, 827
BstNI	CCWGG	3 cut(s)	53, 268, 756
BstSCI	CCNGG	5 cut(s)	45, 51, 266, 555, 754
BstSFI	CTRYAG	2 cut(s)	393, 633
BstSLI	GKGCMC	1 cut(s)	263
BstUI	CGCG	3 cut(s)	532, 537, 740
BstV1I	GCAGC	6 cut(s)	98, 352, 379, 602, 634, 756
BstV2I	GAAGAC	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	10
Bsu15I	ATCGAT	1 cut(s)	414
BsuRI	GGCC	5 cut(s)	12, 175, 510, 720, 731
BsuTUI	ATCGAT	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	156
BveI	ACCTGC	3 cut(s)	386, 626, 634
Cac8I	GCNNGC	5 cut(s)	17, 238, 542, 664, 733
CaiI	CAGNNNCTG	1 cut(s)	626
CciI	TCATGA	1 cut(s)	57
CfoI	GCGC	3 cut(s)	532, 537, 742
Cfr10I	RCCGGY	3 cut(s)	236, 595, 658
Cfr13I	GGNCC	2 cut(s)	49, 173
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	4 cut(s)	196, 205, 561, 719
CsiI	ACCWGGT	2 cut(s)	51, 266
CviAII	CATG	2 cut(s)	58, 115
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
DraI	TTTAAA	1 cut(s)	484
EaeI	YGGCCR	2 cut(s)	10, 729
EagI	CGGCCG	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	372, 693
EarI	CTCTTC	2 cut(s)	372, 693
EclXI	CGGCCG	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	3 cut(s)	51, 266, 754
EcoT38I	GRGCYC	1 cut(s)	42
Esp3I	CGTCTC	4 cut(s)	190, 223, 256, 756
FaeI	CATG	2 cut(s)	61, 118
FaiI	YATR	5 cut(s)	59, 116, 307, 387, 577
FaqI	GGGAC	3 cut(s)	332, 564, 722
FatI	CATG	2 cut(s)	57, 114
FauI	CCCGC	2 cut(s)	745, 826
FblI	GTMKAC	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	3 cut(s)	531, 536, 741
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	5 cut(s)	12, 175, 510, 720, 731
HgaI	GACGC	4 cut(s)	196, 205, 561, 719
HhaI	GCGC	3 cut(s)	532, 537, 742
Hin1I	GRCGYC	6 cut(s)	207, 496, 553, 711, 778, 803
Hin1II	CATG	2 cut(s)	61, 118
Hin6I	GCGC	3 cut(s)	530, 535, 740
HinP1I	GCGC	3 cut(s)	530, 535, 740
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	3 cut(s)	61, 278, 590
HphI	GGTGA	3 cut(s)	223, 610, 650
Hpy166II	GTNNAC	2 cut(s)	31, 356
Hpy188I	TCNGA	5 cut(s)	223, 319, 403, 679, 814
Hpy188III	TCNNGA	3 cut(s)	58, 137, 282
Hpy8I	GTNNAC	2 cut(s)	31, 356
Hpy99I	CGWCG	8 cut(s)	32, 35, 38, 107, 501, 529, 751, 780
HpyCH4III	ACNGT	3 cut(s)	157, 184, 604
HpyCH4IV	ACGT	3 cut(s)	496, 778, 803
HpyCH4V	TGCA	6 cut(s)	67, 395, 618, 629, 635, 772
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 213, 498, 507, 541, 737, 827
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	3 cut(s)	496, 778, 803
Hsp92I	GRCGYC	6 cut(s)	207, 496, 553, 711, 778, 803
Hsp92II	CATG	2 cut(s)	61, 118
HspAI	GCGC	3 cut(s)	530, 535, 740
Kpn2I	TCCGGA	1 cut(s)	281
KroI	GCCGGC	1 cut(s)	236
KroNI	GCCGGC	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	6 cut(s)	98, 352, 379, 602, 634, 756
LweI	GCATC	1 cut(s)	781
MabI	ACCWGGT	2 cut(s)	51, 266
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	3 cut(s)	496, 778, 803
MaeIII	GTNAC	4 cut(s)	123, 229, 464, 598
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	4 cut(s)	110, 389, 434, 710
MfeI	CAATTG	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	42, 263
MluCI	AATT	1 cut(s)	839
MlyI	GAGTC	2 cut(s)	70, 599
MmeI	TCCRAC	1 cut(s)	702
MreI	CGCCGGCG	1 cut(s)	236
MroI	TCCGGA	1 cut(s)	281
MroNI	GCCGGC	1 cut(s)	236
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	1 cut(s)	89
MspR9I	CCNGG	5 cut(s)	47, 53, 268, 557, 756
MteI	GCGCNGCGC	1 cut(s)	533
MunI	CAATTG	1 cut(s)	839
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	3 cut(s)	53, 268, 756
MvnI	CGCG	3 cut(s)	532, 537, 740
MwoI	GCNNNNNNNGC	7 cut(s)	86, 213, 498, 507, 541, 737, 827
NaeI	GCCGGC	1 cut(s)	238
NciI	CCSGG	2 cut(s)	47, 557
NdeII	GATC	1 cut(s)	514
NgoMIV	GCCGGC	1 cut(s)	236
NlaIII	CATG	2 cut(s)	61, 118
NlaIV	GGNNCC	2 cut(s)	154, 760
NmuCI	GTSAC	3 cut(s)	123, 229, 598
PagI	TCATGA	1 cut(s)	57
PaqCI	CACCTGC	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	143
PdiI	GCCGGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	278
PflFI	GACNNNGTC	1 cut(s)	53
PfoI	TCCNGGA	1 cut(s)	754
Ple19I	CGATCG	1 cut(s)	517
PleI	GAGTC	2 cut(s)	69, 598
PpsI	GAGTC	2 cut(s)	69, 598
Psp6I	CCWGG	3 cut(s)	51, 266, 754
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	3 cut(s)	51, 266, 754
PspN4I	GGNNCC	2 cut(s)	154, 760
PspPI	GGNCC	2 cut(s)	49, 173
PstI	CTGCAG	2 cut(s)	397, 637
PstNI	CAGNNNCTG	1 cut(s)	626
PsyI	GACNNNGTC	1 cut(s)	53
PvuI	CGATCG	1 cut(s)	517
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	483
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	2 cut(s)	49, 173
SchI	GAGTC	2 cut(s)	70, 599
ScrFI	CCNGG	5 cut(s)	47, 53, 268, 557, 756
SduI	GDGCHC	2 cut(s)	42, 263
SexAI	ACCWGGT	2 cut(s)	51, 266
SfaNI	GCATC	1 cut(s)	781
SfcI	CTRYAG	2 cut(s)	393, 633
SgrAI	CRCCGGYG	2 cut(s)	236, 595
SgrDI	CGTCGACG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	839
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	5 cut(s)	45, 51, 266, 555, 754
TaaI	ACNGT	3 cut(s)	157, 184, 604
TaiI	ACGT	3 cut(s)	499, 781, 806
TaqI	TCGA	6 cut(s)	30, 414, 513, 517, 684, 775
TasI	AATT	1 cut(s)	839
TauI	GCSGC	5 cut(s)	15, 535, 540, 693, 745
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TseFI	GTSAC	3 cut(s)	123, 229, 598
TseI	GCWGC	6 cut(s)	86, 365, 392, 615, 647, 769
Tsp45I	GTSAC	3 cut(s)	123, 229, 598
TspDTI	ATGAA	2 cut(s)	402, 435
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 702
XmiI	GTMKAC	1 cut(s)	30
XspI	CTAG	1 cut(s)	339
ZraI	GACGTC	3 cut(s)	497, 779, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.