Rmu_sc0003510.1_g000022

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003510.1
OG0002694
Physical Location & Seq
Reverse (-)
85953 .. 87545
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1593 bp
atggagaatggtatcataatgatagagctaactgatgccgatcaggaacgagtggtgatcgatattgacgaatctgtagctgccatgcaaaggcgcctacacgaaaggagatgcggaagtcggagagcatcaatatatatggacaactttagttcagttgtctgcatatacagagttcctgaaagcctcgtgggaatcagtccaaaagctattaggcctgaaaaggtctccatcggaccttatcaccacagcaagagcaaggaatctgaagagaccaaaatgaagtattttgaagcttttctctctagaaaaaagagagatggtagtgctggacctgatctaagtaccttgtttaaagccgcgagaaatatagaggcagaagcaagaagatgctatgatgatcaggccatcgctatgtcaagcggggagtttgttgctatgatggtacttgatgggtgctttatcattgagcttttcctacaagaccaagaggacaaactcaaagatgttgaagagaaggaccgcctggttatggacctcctcaagcttgaaaaccaactgcctttcttcgtccttgaaagactattcagcctgttcggtgattcatctgcaccaggtgattctctagccttgcttgccttgaagttcttcaatgtttatgatcacaaagtcctggatgatgttaaacacttgttacacttgtttcactcaagcttccgtacccctttattattagaacgagataatactcgatatcagctctctaatattagaagccgctgcgtagacttacttggggaagctgatgatgtaatgattgcatatgtaacgacatgcctatcaatcgacagcccagcgaccgcaatgaggtgcttacttgcaaccccttttctatttgtttggggtatccttgcattcctttatcgtcttctaaggttagtcggttcaatccttttattctttgtttggtggaacctggataacgttcaaagattccttcaccccacaggtcaggagcatcgtcctttctccgattcaatccaatgtgccacacaactaagaccctccgggatcattttcaagccactcctagcagaaagcttcttaactatcgattaccacaaacgggtactgcaaataccacccataaccatcaacgatatcactattactatcttcatcaacagcatagccttagaacaatgttgcccacacaagactggttctttatttaccacttacaatattgccttcatgagctctctcatcaatacgcctagagacatcgcattgctttctggtaccgggattatcattaccagcttctcacacaacgaccatagcatagctgacctgttgaacaagttagggaaaacagtttatttcgacaaggattgctacctctccaagcaattcagagacgtggaggcttattacaacagccattggggtacttttctacgaacttattttagcgcccaatggtgcttcatttcagttgtctcagcctgcattcttcttttgctggccgcagctcaaacagttgtgtctatcttgagctatatcaaacaaatgtcggacaagggaaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

530

Amino Acids

60.36

Weight (kDa)

6.29

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 56 - 509 1.6e-88 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1301
AccB1I GGYRCC 2 cut(s) 93, 1301
AccI GTMKAC 1 cut(s) 786
AccII CGCG 1 cut(s) 362
AciI CCGC 7 cut(s) 114, 360, 423, 523, 778, 861, 1530
AclI AACGTT 1 cut(s) 984
AclWI GGATC 1 cut(s) 1079
AcoI YGGCCR 1 cut(s) 1527
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 94
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 6 cut(s) 346, 447, 721, 1131, 1303, 1453
AfiI CCNNNNNNNGG 4 cut(s) 90, 532, 867, 1126
AjiI CACGTC 1 cut(s) 1423
AjnI CCWGG 4 cut(s) 525, 613, 672, 975
Alw21I GWGCWC 1 cut(s) 1262
Alw26I GTCTC 5 cut(s) 232, 266, 1275, 1413, 1507
AlwI GGATC 1 cut(s) 1079
AoxI GGCC 3 cut(s) 215, 405, 1527
ApeKI GCWGC 3 cut(s) 80, 780, 1532
Asp700I GAANNNNTTC 2 cut(s) 297, 647
Asp718I GGTACC 1 cut(s) 1301
AspLEI GCGC 2 cut(s) 96, 1478
AspS9I GGNCC 4 cut(s) 236, 332, 520, 535
AsuC2I CCSGG 2 cut(s) 1069, 1306
AsuHPI GGTGA 5 cut(s) 67, 236, 611, 629, 992
AvaII GGWCC 4 cut(s) 236, 332, 520, 535
BanI GGYRCC 2 cut(s) 93, 1301
BanII GRGCYC 1 cut(s) 1262
BauI CACGAG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 920
Bbv12I GWGCWC 1 cut(s) 1262
BbvI GCAGC 3 cut(s) 67, 767, 1544
BccI CCATC 6 cut(s) 239, 314, 416, 436, 446, 1160
BciT130I CCWGG 4 cut(s) 527, 615, 674, 977
BciVI GTATCC 1 cut(s) 917
BclI TGATCA 2 cut(s) 400, 661
BcnI CCSGG 2 cut(s) 1069, 1306
BcoDI GTCTC 5 cut(s) 232, 266, 1275, 1413, 1507
BfaI CTAG 4 cut(s) 306, 626, 1091, 1278
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 2 cut(s) 97, 1479
BfuI GTATCC 1 cut(s) 917
BisI GCNGC 6 cut(s) 81, 360, 778, 781, 1530, 1533
BlsI GCNGC 6 cut(s) 82, 361, 779, 782, 1531, 1534
Bme1390I CCNGG 6 cut(s) 527, 615, 674, 977, 1069, 1306
Bme18I GGWCC 4 cut(s) 236, 332, 520, 535
BmgBI CACGTC 1 cut(s) 1423
BmgT120I GGNCC 4 cut(s) 236, 332, 520, 535
BmiI GGNNCC 3 cut(s) 95, 974, 1303
BmrFI CCNGG 6 cut(s) 527, 615, 674, 977, 1069, 1306
BmsI GCATC 5 cut(s) 25, 101, 137, 380, 1027
BpiI GAAGAC 1 cut(s) 920
BpuEI CTTGAG 3 cut(s) 527, 694, 1576
BpuMI CCSGG 2 cut(s) 1069, 1306
Bsa29I ATCGAT 2 cut(s) 60, 1113
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 94
BsaI GGTCTC 2 cut(s) 232, 266
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 532, 867, 1126
Bse1I ACTGG 1 cut(s) 1225
Bse3DI GCAATG 2 cut(s) 870, 1289
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 4 cut(s) 527, 615, 674, 977
BseCI ATCGAT 2 cut(s) 60, 1113
BseGI GGATG 1 cut(s) 682
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 4 cut(s) 90, 532, 867, 1126
BseMI GCAATG 2 cut(s) 870, 1289
BseMII CTCAG 1 cut(s) 1518
BseNI ACTGG 1 cut(s) 1225
BseRI GAGGAG 1 cut(s) 530
BseXI GCAGC 3 cut(s) 67, 767, 1544
BseYI CCCAGC 1 cut(s) 853
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 1 cut(s) 362
Bsh1285I CGRYCG 1 cut(s) 861
BshFI GGCC 3 cut(s) 217, 407, 1529
BshNI GGYRCC 2 cut(s) 93, 1301
BshVI ATCGAT 2 cut(s) 60, 1113
BsiEI CGRYCG 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 1262
BsiSI CCGG 2 cut(s) 1068, 1305
BslI CCNNNNNNNGG 4 cut(s) 90, 532, 867, 1126
BsmAI GTCTC 5 cut(s) 232, 266, 1275, 1413, 1507
BsmBI CGTCTC 1 cut(s) 1413
BsmI GAATGC 2 cut(s) 914, 1512
BsnI GGCC 3 cut(s) 217, 407, 1529
Bso31I GGTCTC 2 cut(s) 232, 266
Bsp1286I GDGCHC 1 cut(s) 1262
Bsp143I GATC 6 cut(s) 40, 57, 337, 400, 661, 1071
BspACI CCGC 7 cut(s) 114, 360, 423, 523, 778, 861, 1530
BspANI GGCC 3 cut(s) 217, 407, 1529
BspCNI CTCAG 1 cut(s) 1517
BspDI ATCGAT 2 cut(s) 60, 1113
BspFNI CGCG 1 cut(s) 362
BspHI TCATGA 1 cut(s) 1254
BspLI GGNNCC 3 cut(s) 95, 974, 1303
BspPI GGATC 1 cut(s) 1079
BspT107I GGYRCC 2 cut(s) 93, 1301
BspTNI GGTCTC 2 cut(s) 232, 266
BsrDI GCAATG 2 cut(s) 870, 1289
BsrI ACTGG 1 cut(s) 1225
BssMI GATC 6 cut(s) 40, 57, 337, 400, 661, 1071
BssNI GRCGYC 1 cut(s) 94
BssSI CACGAG 1 cut(s) 188
Bst2BI CACGAG 1 cut(s) 188
Bst2UI CCWGG 4 cut(s) 527, 615, 674, 977
Bst4CI ACNGT 2 cut(s) 1378, 1543
Bst6I CTCTTC 2 cut(s) 264, 507
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 636, 1510, 1527
BstDEI CTNAG 5 cut(s) 341, 932, 1058, 1195, 1504
BstF5I GGATG 1 cut(s) 682
BstFNI CGCG 1 cut(s) 362
BstH2I RGCGCY 2 cut(s) 97, 1479
BstHHI GCGC 2 cut(s) 96, 1478
BstKTI GATC 6 cut(s) 43, 60, 340, 403, 664, 1074
BstMAI GTCTC 5 cut(s) 232, 266, 1275, 1413, 1507
BstMBI GATC 6 cut(s) 40, 57, 337, 400, 661, 1071
BstMCI CGRYCG 1 cut(s) 861
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNI CCWGG 4 cut(s) 527, 615, 674, 977
BstNSI RCATGY 1 cut(s) 837
BstSCI CCNGG 6 cut(s) 525, 613, 672, 975, 1067, 1304
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 3 cut(s) 67, 767, 1544
BstV2I GAAGAC 1 cut(s) 920
Bsu15I ATCGAT 2 cut(s) 60, 1113
BsuI GTATCC 1 cut(s) 917
BsuRI GGCC 3 cut(s) 217, 407, 1529
BsuTUI ATCGAT 2 cut(s) 60, 1113
BtgZI GCGATG 2 cut(s) 394, 1270
BtrI CACGTC 1 cut(s) 1423
BtsCI GGATG 1 cut(s) 682
Cac8I GCNNGC 3 cut(s) 636, 1510, 1527
CciI TCATGA 1 cut(s) 1254
CfoI GCGC 2 cut(s) 96, 1478
Cfr13I GGNCC 4 cut(s) 236, 332, 520, 535
ClaI ATCGAT 2 cut(s) 60, 1113
CsiI ACCWGGT 1 cut(s) 613
Csp6I GTAC 6 cut(s) 345, 446, 720, 1130, 1302, 1452
CviAII CATG 3 cut(s) 85, 834, 1255
CviQI GTAC 6 cut(s) 345, 446, 720, 1130, 1302, 1452
DdeI CTNAG 5 cut(s) 341, 932, 1058, 1195, 1504
DinI GGCGCC 1 cut(s) 95
DpnI GATC 6 cut(s) 42, 59, 339, 402, 663, 1073
DpnII GATC 6 cut(s) 40, 57, 337, 400, 661, 1071
DraI TTTAAA 1 cut(s) 355
DraIII CACNNNGTG 1 cut(s) 617
EaeI YGGCCR 1 cut(s) 1527
Eam1104I CTCTTC 2 cut(s) 264, 507
EarI CTCTTC 2 cut(s) 264, 507
Ecl136II GAGCTC 1 cut(s) 1260
Eco147I AGGCCT 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 1262
Eco31I GGTCTC 2 cut(s) 232, 266
Eco32I GATATC 2 cut(s) 755, 1162
Eco47I GGWCC 4 cut(s) 236, 332, 520, 535
Eco53kI GAGCTC 1 cut(s) 1260
Eco57I CTGAAG 1 cut(s) 288
EcoICRI GAGCTC 1 cut(s) 1260
EcoRII CCWGG 4 cut(s) 525, 613, 672, 975
EcoRV GATATC 2 cut(s) 755, 1162
EcoT38I GRGCYC 1 cut(s) 1262
EgeI GGCGCC 1 cut(s) 95
EheI GGCGCC 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 1413
FaeI CATG 3 cut(s) 88, 837, 1258
FatI CATG 3 cut(s) 84, 833, 1254
FauI CCCGC 1 cut(s) 416
FauNDI CATATG 1 cut(s) 823
FbaI TGATCA 2 cut(s) 400, 661
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 6 cut(s) 81, 360, 778, 781, 1530, 1533
FokI GGATG 1 cut(s) 689
FriOI GRGCYC 1 cut(s) 1262
Fsp4HI GCNGC 6 cut(s) 81, 360, 778, 781, 1530, 1533
FspBI CTAG 4 cut(s) 306, 626, 1091, 1278
GlaI GCGC 2 cut(s) 95, 1477
GluI GCNGC 6 cut(s) 81, 360, 778, 781, 1530, 1533
GsaI CCCAGC 1 cut(s) 857
HaeII RGCGCY 2 cut(s) 97, 1479
HaeIII GGCC 3 cut(s) 217, 407, 1529
HapII CCGG 2 cut(s) 1068, 1305
HhaI GCGC 2 cut(s) 96, 1478
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 3 cut(s) 88, 837, 1258
Hin6I GCGC 2 cut(s) 94, 1476
HinP1I GCGC 2 cut(s) 94, 1476
HindIII AAGCTT 4 cut(s) 294, 545, 712, 1099
HinfI GANTC 7 cut(s) 71, 195, 263, 602, 620, 993, 1034
HpaII CCGG 2 cut(s) 1068, 1305
HphI GGTGA 5 cut(s) 67, 236, 611, 629, 992
Hpy166II GTNNAC 1 cut(s) 787
Hpy188I TCNGA 6 cut(s) 123, 236, 268, 1033, 1418, 1579
Hpy188III TCNNGA 6 cut(s) 44, 179, 306, 1013, 1255, 1555
Hpy8I GTNNAC 1 cut(s) 787
HpyAV CCTTC 3 cut(s) 511, 1007, 1261
HpyCH4III ACNGT 2 cut(s) 1378, 1543
HpyCH4IV ACGT 2 cut(s) 984, 1422
HpyCH4V TGCA 8 cut(s) 88, 165, 611, 821, 881, 914, 1135, 1512
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpyF3I CTNAG 5 cut(s) 341, 932, 1058, 1195, 1504
HpySE526I ACGT 2 cut(s) 984, 1422
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 3 cut(s) 88, 837, 1258
HspAI GCGC 2 cut(s) 94, 1476
KasI GGCGCC 1 cut(s) 93
KpnI GGTACC 1 cut(s) 1305
Ksp22I TGATCA 2 cut(s) 400, 661
Kzo9I GATC 6 cut(s) 40, 57, 337, 400, 661, 1071
LmnI GCTCC 1 cut(s) 1015
Lsp1109I GCAGC 3 cut(s) 67, 767, 1544
LweI GCATC 5 cut(s) 25, 101, 137, 380, 1027
MabI ACCWGGT 1 cut(s) 613
MaeI CTAG 4 cut(s) 306, 626, 1091, 1278
MaeII ACGT 2 cut(s) 984, 1422
MaeIII GTNAC 2 cut(s) 693, 826
MalI GATC 6 cut(s) 42, 59, 339, 402, 663, 1073
MboI GATC 6 cut(s) 40, 57, 337, 400, 661, 1071
MboII GAAGA 8 cut(s) 281, 399, 524, 559, 640, 920, 1168, 1508
MhlI GDGCHC 1 cut(s) 1262
MluCI AATT 1 cut(s) 1412
Mly113I GGCGCC 1 cut(s) 94
MmeI TCCRAC 2 cut(s) 101, 1557
MnlI CCTC 9 cut(s) 197, 367, 484, 548, 551, 861, 1075, 1412, 1420
MroXI GAANNNNTTC 2 cut(s) 297, 647
MseI TTAA 3 cut(s) 354, 684, 1106
MslI CAYNNNNRTG 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 780
MspI CCGG 2 cut(s) 1068, 1305
MspR9I CCNGG 6 cut(s) 527, 615, 674, 977, 1069, 1306
Mva1269I GAATGC 2 cut(s) 914, 1512
MvaI CCWGG 4 cut(s) 527, 615, 674, 977
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 1 cut(s) 635
NarI GGCGCC 1 cut(s) 94
NciI CCSGG 2 cut(s) 1069, 1306
NdeI CATATG 1 cut(s) 823
NdeII GATC 6 cut(s) 40, 57, 337, 400, 661, 1071
NlaIII CATG 3 cut(s) 88, 837, 1258
NlaIV GGNNCC 3 cut(s) 95, 974, 1303
NspI RCATGY 1 cut(s) 837
PagI TCATGA 1 cut(s) 1254
PceI AGGCCT 1 cut(s) 217
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 2 cut(s) 914, 1512
PdmI GAANNNNTTC 2 cut(s) 297, 647
PfeI GAWTC 7 cut(s) 71, 195, 263, 602, 620, 993, 1034
PfoI TCCNGGA 2 cut(s) 672, 1067
PkrI GCNGC 6 cut(s) 82, 361, 779, 782, 1531, 1534
PluTI GGCGCC 1 cut(s) 97
Psp124BI GAGCTC 1 cut(s) 1262
Psp1406I AACGTT 1 cut(s) 984
Psp6I CCWGG 4 cut(s) 525, 613, 672, 975
PspFI CCCAGC 1 cut(s) 853
PspGI CCWGG 4 cut(s) 525, 613, 672, 975
PspN4I GGNNCC 3 cut(s) 95, 974, 1303
PspPI GGNCC 4 cut(s) 236, 332, 520, 535
RsaI GTAC 6 cut(s) 346, 447, 721, 1131, 1303, 1453
RsaNI GTAC 6 cut(s) 345, 446, 720, 1130, 1302, 1452
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 1262
SaqAI TTAA 3 cut(s) 354, 684, 1106
SatI GCNGC 6 cut(s) 81, 360, 778, 781, 1530, 1533
Sau3AI GATC 6 cut(s) 40, 57, 337, 400, 661, 1071
Sau96I GGNCC 4 cut(s) 236, 332, 520, 535
ScrFI CCNGG 6 cut(s) 527, 615, 674, 977, 1069, 1306
SduI GDGCHC 1 cut(s) 1262
SexAI ACCWGGT 1 cut(s) 613
SfaNI GCATC 5 cut(s) 25, 101, 137, 380, 1027
SfcI CTRYAG 1 cut(s) 75
SfoI GGCGCC 1 cut(s) 95
SinI GGWCC 4 cut(s) 236, 332, 520, 535
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 3 cut(s) 542, 709, 1555
SmoI CTYRAG 3 cut(s) 542, 709, 1555
Sse9I AATT 1 cut(s) 1412
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 7 cut(s) 114, 360, 423, 523, 778, 861, 1530
SspDI GGCGCC 1 cut(s) 93
SspI AATATT 2 cut(s) 769, 1246
SspMI CTAG 4 cut(s) 306, 626, 1091, 1278
SstI GAGCTC 1 cut(s) 1262
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 6 cut(s) 525, 613, 672, 975, 1067, 1304
TaaI ACNGT 2 cut(s) 1378, 1543
TaiI ACGT 2 cut(s) 987, 1425
TaqI TCGA 5 cut(s) 60, 751, 846, 1113, 1386
TasI AATT 1 cut(s) 1412
TauI GCSGC 3 cut(s) 362, 780, 1532
TfiI GAWTC 7 cut(s) 71, 195, 263, 602, 620, 993, 1034
Tru1I TTAA 3 cut(s) 354, 684, 1106
Tru9I TTAA 3 cut(s) 354, 684, 1106
TseI GCWGC 3 cut(s) 80, 780, 1532
TspDTI ATGAA 5 cut(s) 296, 594, 1168, 1243, 1480
TspGWI ACGGA 1 cut(s) 707
VpaK11BI GGWCC 4 cut(s) 236, 332, 520, 535
XbaI TCTAGA 1 cut(s) 305
XceI RCATGY 1 cut(s) 837
XmiI GTMKAC 1 cut(s) 786
XmnI GAANNNNTTC 2 cut(s) 297, 647
XspI CTAG 4 cut(s) 306, 626, 1091, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.