Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003957.1

Orthogroup ID

OG0002791

Physical Location & Seq

Genomic Coordinates Forward (+)

988 .. 4922

Gene Structure 3935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgagtgcaggattacacagattatggaaggatagattggtttcaaaactgaatccttttcctggaatgaaccatcttgatgtggctggtgggacaggtgatgttgctttcagaatactagacagtataaacagcatcaaacatagagctttgctgaatgttcttgaagatgatttacaggaagaaactaaggtgtatgtatgtgacatcaatcccaacatgttgaatgttggtaaaaagcgggccttgcagagaggtcttggagaagacaaatcccttctatgggtggagggagatgcagaagccttgagtttcggagataatacaatggatggttacacaattgcatttgggatccggaatgtcacacacatagagaaagcactttctgaagcttatagggtactaaaacggggaggaaggttcctgtgccttgaactcagccatgtagaggtacctgtattcaaagacttctatgacttttattcattctcaatcattcccaccctaggagagctagttgcaggggatagagaatcttatcagtacttggtggagagtattcgtcgttttccgccacaggagacatttgcatcaatgattgcagacgcaggtttccagaaggttgagtatgaaaatctagttggaggagtggtagcgattcattcagggttgaaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Ubie_methyltran

Protein Analysis

227

Amino Acids

25.4

Weight (kDa)

5.55

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	1 - 226	5.3e-74	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	21 - 148	1.8e-07	Methyltransferase domain
Methyltransf_12	PF08242	26 - 142	1.4e-07	Methyltransferase domain
Methyltransf_25	PF13649	59 - 140	6.5e-12	Methyltransferase domain
Methyltransf_11	PF08241	63 - 144	3.9e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002791)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57300 AT5G57300 AT5G57300 AT5G57300
fragaria_vesca	FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660 FvH4_4g07660
malus_domestica	MD03G1035800.v1.1 MD03G1036000.v1.1 MD13G1245000.v1.1 MD16G1253300.v1.1
prunus_persica	Prupe.1G079700_v2.0.a1 Prupe.1G079700_v2.0.a1
pyrus_communis	pycom13g21600
rosa_chinensis	RchiOBHm_Chr4g0400331 RchiOBHm_Chr4g0400411 RchiOBHm_Chr4g0400471 RchiOBHm_Chr4g0400591 RchiOBHm_Chr4g0400601 RchiOBHm_Chr4g0400651 RchiOBHm_Chr4g0400661
rosa_laevigata	RLG00000009189
rosa_multiflora	Rmu_sc0003957.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345430
rosa_rugosa	Rorug04G0024900 Rorug04G0025000
rosa_samantha	Rh4AG101200 Rh4AG101300 Rh4AG102600 Rh4BG097900 Rh4CG110900 Rh4DG094600 Rh7BG256500
rosa_wichuraiana	Rw4G008310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	602
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	454
AccIII	TCCGGA	1 cut(s)	357
AciI	CCGC	2 cut(s)	241, 575
AclWI	GGATC	2 cut(s)	349, 362
AcsI	RAATTY	1 cut(s)	678
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	3 cut(s)	405, 456, 548
AfiI	CCNNNNNNNGG	5 cut(s)	62, 282, 283, 451, 509
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	6 cut(s)	45, 167, 226, 437, 466, 676
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	4 cut(s)	20, 52, 627, 659
AluBI	AGCT	3 cut(s)	149, 395, 517
AluI	AGCT	3 cut(s)	149, 395, 517
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	2 cut(s)	349, 362
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	1 cut(s)	243
ApoI	RAATTY	1 cut(s)	678
Asp718I	GGTACC	1 cut(s)	454
AspA2I	CCTAGG	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	110
AvrII	CCTAGG	1 cut(s)	508
BamHI	GGATCC	1 cut(s)	354
BanI	GGYRCC	1 cut(s)	454
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	2 cut(s)	81, 326
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	4 cut(s)	119, 509, 518, 641
BfuAI	ACCTGC	1 cut(s)	602
BlnI	CCTAGG	1 cut(s)	508
BmcAI	AGTACT	1 cut(s)	548
Bme1390I	CCNGG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	356, 425, 456
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	3 cut(s)	144, 286, 602
BpiI	GAAGAC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	4 cut(s)	504, 534, 639, 669
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 282, 283, 451, 509
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	5 cut(s)	62, 282, 283, 451, 509
BseMII	CTCAG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	663
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	5 cut(s)	62, 282, 283, 451, 509
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	245
Bsp13I	TCCGGA	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	354
BspACI	CCGC	2 cut(s)	241, 575
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	453
BspEI	TCCGGA	1 cut(s)	357
BspLI	GGNNCC	3 cut(s)	356, 425, 456
BspMI	ACCTGC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	349, 362
BspT107I	GGYRCC	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	189, 440
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	617
Csp6I	GTAC	3 cut(s)	404, 455, 547
CviAII	CATG	2 cut(s)	220, 446
CviJI	RGCY	7 cut(s)	86, 149, 245, 305, 395, 444, 517
CviKI_1	RGCY	7 cut(s)	86, 149, 245, 305, 395, 444, 517
CviQI	GTAC	3 cut(s)	404, 455, 547
DdeI	CTNAG	2 cut(s)	189, 440
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	411
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	508
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	2 cut(s)	223, 449
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	2 cut(s)	219, 445
FauI	CCCGC	1 cut(s)	234
FokI	GGATG	1 cut(s)	344
FspBI	CTAG	4 cut(s)	119, 509, 518, 641
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	358
HgaI	GACGC	1 cut(s)	617
Hin1II	CATG	2 cut(s)	223, 449
HindIII	AAGCTT	1 cut(s)	393
HinfI	GANTC	3 cut(s)	52, 536, 661
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	3 cut(s)	113, 317, 391
Hpy188III	TCNNGA	4 cut(s)	77, 164, 358, 619
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	4 cut(s)	22, 287, 414, 616
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	7 cut(s)	8, 250, 299, 347, 524, 593, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	2 cut(s)	189, 440
Hsp92II	CATG	2 cut(s)	223, 449
Kpn2I	TCCGGA	1 cut(s)	357
KpnI	GGTACC	1 cut(s)	458
Kzo9I	GATC	1 cut(s)	354
LweI	GCATC	3 cut(s)	144, 286, 602
MaeI	CTAG	4 cut(s)	119, 509, 518, 641
MaeIII	GTNAC	3 cut(s)	203, 335, 364
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	3 cut(s)	179, 194, 278
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	354
MluCI	AATT	2 cut(s)	342, 678
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	5 cut(s)	248, 283, 410, 445, 641
MroI	TCCGGA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	2 cut(s)	223, 449
NlaIV	GGNNCC	3 cut(s)	356, 425, 456
NmuCI	GTSAC	2 cut(s)	203, 364
NspI	RCATGY	1 cut(s)	223
PciI	ACATGT	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	52, 536, 661
PfoI	TCCNGGA	1 cut(s)	61
PscI	ACATGT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	356, 425, 456
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	354
RsaI	GTAC	3 cut(s)	405, 456, 548
RsaNI	GTAC	3 cut(s)	404, 455, 547
RseI	CAYNNNNRTG	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	243
ScaI	AGTACT	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	63
SfaNI	GCATC	3 cut(s)	144, 286, 602
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	2 cut(s)	342, 678
SsiI	CCGC	2 cut(s)	241, 575
SspMI	CTAG	4 cut(s)	119, 509, 518, 641
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	2 cut(s)	342, 678
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	3 cut(s)	52, 536, 661
TseFI	GTSAC	2 cut(s)	203, 364
Tsp45I	GTSAC	2 cut(s)	203, 364
TspDTI	ATGAA	4 cut(s)	83, 477, 648, 653
XapI	RAATTY	1 cut(s)	678
XceI	RCATGY	1 cut(s)	223
XmaJI	CCTAGG	1 cut(s)	508
XspI	CTAG	4 cut(s)	119, 509, 518, 641
ZrmI	AGTACT	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.