Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004288.1

Orthogroup ID

OG0003835

Physical Location & Seq

Genomic Coordinates Reverse (-)

43332 .. 43961

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgccaagcaagaaaaaatccttgggtttaaatgaaactgcaactaaagagttgccttcatcaattgggtctcttaaaaaacttgctaaactgaatctttctagccgtgcaggcattaagaatcttccaagaagccctaggaagctgaaatgcctggcatttcgtgtgtgtatctccgggatcatttcagtcgtactgcaagatagcaaacagcttgtgaggctcccagccagcatctatgagttaaaatctctgaagaacttgatctctctggtcgcagaaatcttgaagaagttcccagaaatcttggaggtaatgaaatgtcttgagtttctttgtgtgctaattaaagaaattgtaggggtaccctcttcaattgaaaattttgttgggcttaaaacactagagatatcttcatgtggaagccttgagtttgtccccaacagcatctgcaatttaaacgttcttgagcatttctcagtgacttacaggctgcgggaaactgaaaagattgcctcccatgtcagtgattttgtgccattgatatctctagacctccgtgattgcaaatttttagaagaaatatatccccgatggcctcattggctcaacctcattgcaaagacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

209

Amino Acids

23.46

Weight (kDa)

9.33

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	7 - 88	2.8e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05400 AT4G05400 AT4G05400 AT4G21140
fragaria_vesca	FvH4_6g03230 FvH4_6g03240 FvH4_6g03270
malus_domestica	MD04G1222200.v1.1 MD12G1238400.v1.1
prunus_persica	Prupe.6G341300_v2.0.a1
pyrus_communis	pycom05g14480
rosa_chinensis	RchiOBHm_Chr3g0451651 RchiOBHm_Chr3g0451741 RchiOBHm_Chr3g0485311 RchiOBHm_Chr7g0201561
rosa_laevigata	RLG00000025655 RLG00000029506
rosa_multiflora	Rmu_sc0004288.1_g000010 Rmu_sc0004924.1_g000004 Rmu_sc0004924.1_g000019 Rmu_sc0009360.1_g000004 Rmu_sc0009360.1_g000045
rosa_roxburghii	Rroxscaffold_164G00436350 Rroxscaffold_164G00436420 Rroxscaffold_5G00368590 Rroxscaffold_6G00428900 Rroxscaffold_6G00428940
rosa_rugosa	Rorug02G0635500
rosa_samantha	Rh1AG135900 Rh3AG037300 Rh3BG038400 Rh3CG036900 Rh3DG037600
rosa_wichuraiana	Rw3G002780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	364
AciI	CCGC	1 cut(s)	496
AclI	AACGTT	1 cut(s)	462
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	382, 569
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	195, 366
AgsI	TTSAA	3 cut(s)	289, 375, 380
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 372, 404
AluBI	AGCT	2 cut(s)	145, 214
AluI	AGCT	2 cut(s)	145, 214
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	1 cut(s)	188
AlwNI	CAGNNNCTG	1 cut(s)	450
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	382, 569
Asp700I	GAANNNNTTC	1 cut(s)	293
Asp718I	GGTACC	1 cut(s)	364
AspA2I	CCTAGG	1 cut(s)	137
AsuC2I	CCSGG	1 cut(s)	178
AvrII	CCTAGG	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	1 cut(s)	588
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	4 cut(s)	102, 138, 404, 551
BglI	GCCNNNNNGGC	2 cut(s)	111, 604
BisI	GCNGC	1 cut(s)	494
BlnI	CCTAGG	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	495
Bme1390I	CCNGG	2 cut(s)	155, 178
BmiI	GGNNCC	2 cut(s)	224, 366
BmrFI	CCNGG	2 cut(s)	155, 178
BmsI	GCATC	2 cut(s)	243, 456
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpuEI	CTTGAG	3 cut(s)	347, 449, 488
BpuMI	CCSGG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	21, 137
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	21, 137
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	492
BseXI	GCAGC	1 cut(s)	480
BseYI	CCCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	598
BshNI	GGYRCC	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	598
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	180, 264
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	491
BspLI	GGNNCC	2 cut(s)	224, 366
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	615
BssECI	CCNNGG	2 cut(s)	21, 137
BssMI	GATC	2 cut(s)	180, 264
BssT1I	CCWWGG	2 cut(s)	21, 137
Bst2UI	CCWGG	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	112, 232
BstDEI	CTNAG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	183, 267
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	180, 264
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 220, 604
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	153, 176
BstV1I	GCAGC	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	486, 532
Cac8I	GCNNGC	2 cut(s)	112, 232
CaiI	CAGNNNCTG	1 cut(s)	450
Csp6I	GTAC	2 cut(s)	194, 365
CviAII	CATG	2 cut(s)	417, 521
CviQI	GTAC	2 cut(s)	194, 365
DdeI	CTNAG	1 cut(s)	478
DpnI	GATC	2 cut(s)	182, 266
DpnII	GATC	2 cut(s)	180, 264
DraI	TTTAAA	2 cut(s)	30, 459
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco130I	CCWWGG	2 cut(s)	21, 137
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	2 cut(s)	411, 546
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	2 cut(s)	411, 546
EcoT14I	CCWWGG	2 cut(s)	21, 137
ErhI	CCWWGG	2 cut(s)	21, 137
FaeI	CATG	2 cut(s)	420, 524
FaiI	YATR	4 cut(s)	240, 418, 522, 586
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	416, 520
FauI	CCCGC	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	494
Fsp4HI	GCNGC	1 cut(s)	494
FspBI	CTAG	4 cut(s)	102, 138, 404, 551
GluI	GCNGC	1 cut(s)	494
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	177
Hin1II	CATG	2 cut(s)	420, 524
HinfI	GANTC	2 cut(s)	94, 121
HpaII	CCGG	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	4 cut(s)	286, 326, 467, 551
HpyAV	CCTTC	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	6 cut(s)	41, 110, 199, 453, 567, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 220, 604
HpyF3I	CTNAG	1 cut(s)	478
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	420, 524
KpnI	GGTACC	1 cut(s)	368
Kzo9I	GATC	2 cut(s)	180, 264
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	9 cut(s)	96, 140, 167, 190, 240, 244, 257, 312, 475
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	2 cut(s)	243, 456
MaeI	CTAG	4 cut(s)	102, 138, 404, 551
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	182, 266
MboI	GATC	2 cut(s)	180, 264
MboII	GAAGA	6 cut(s)	116, 268, 301, 363, 405, 590
MfeI	CAATTG	2 cut(s)	63, 375
MluCI	AATT	7 cut(s)	63, 345, 354, 375, 382, 454, 569
MnlI	CCTC	7 cut(s)	213, 304, 379, 526, 566, 609, 623
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	8 cut(s)	29, 75, 117, 245, 348, 396, 458, 628
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	155, 178
MunI	CAATTG	2 cut(s)	63, 375
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	3 cut(s)	111, 220, 604
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	2 cut(s)	180, 264
NlaIII	CATG	2 cut(s)	420, 524
NlaIV	GGNNCC	2 cut(s)	224, 366
NmuCI	GTSAC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	94, 121
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	495
Psp1406I	AACGTT	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	224, 366
PstNI	CAGNNNCTG	1 cut(s)	450
RsaI	GTAC	2 cut(s)	195, 366
RsaNI	GTAC	2 cut(s)	194, 365
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	8 cut(s)	29, 75, 117, 245, 348, 396, 458, 628
SatI	GCNGC	1 cut(s)	494
Sau3AI	GATC	2 cut(s)	180, 264
ScrFI	CCNGG	2 cut(s)	155, 178
SetI	ASST	6 cut(s)	147, 216, 315, 465, 558, 615
SfaNI	GCATC	2 cut(s)	243, 456
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	3 cut(s)	326, 428, 467
SmoI	CTYRAG	3 cut(s)	326, 428, 467
Sse9I	AATT	7 cut(s)	63, 345, 354, 375, 382, 454, 569
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	4 cut(s)	102, 138, 404, 551
StyD4I	CCNGG	2 cut(s)	153, 176
StyI	CCWWGG	2 cut(s)	21, 137
TaiI	ACGT	1 cut(s)	465
TasI	AATT	7 cut(s)	63, 345, 354, 375, 382, 454, 569
TfiI	GAWTC	2 cut(s)	94, 121
Tru1I	TTAA	8 cut(s)	29, 75, 117, 245, 348, 396, 458, 628
Tru9I	TTAA	8 cut(s)	29, 75, 117, 245, 348, 396, 458, 628
TscAI	CASTG	2 cut(s)	486, 532
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	4 cut(s)	48, 48, 332, 405
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	2 cut(s)	486, 532
XapI	RAATTY	2 cut(s)	382, 569
XbaI	TCTAGA	1 cut(s)	550
XmaJI	CCTAGG	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	4 cut(s)	102, 138, 404, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.