Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005055.1

Orthogroup ID

OG0004408

Physical Location & Seq

Genomic Coordinates Reverse (-)

51454 .. 52543

Gene Structure 1090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggcaagctggtgcaggaaatgcatatatttgaaaccgaagttggagaaattggcagctgcgcactatccaagtttactattctgtagtgttgatgtcaactctgtcccacacaagcttgttgcttgtgctaaagtcactaggatgcctaataaacagctctggaaagatggcgagaaacaagctgaggtaatcggtggtcatggcaaagcatattcagtgattaatgaatttgctatagtcgcctttgtcaaggggagggtaaaaccagcccattctcctgtagggcaatcctcaggccgctggacgtgtgctcatgctgaggccattctggccatctttcaacttctcaacaagacctggaaatgcatatatttgaaaccgaagttggagaaattggcagctgcgcactatccaagtttactattctgtagtgttgatgtcaactctgtcccacacaagcttgttgcttgtgctaaagtcaccaggatgcctaataaacagctctggaaagatggcgagaaacaagctgaggtaatcggtggtcatggcaaagcatattcagtgattaatgaagttcgtgcaatgattgaaactaacaatagcacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

203

Amino Acids

22.45

Weight (kDa)

9.56

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	2 - 70	2.8e-08	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004408)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04260
fragaria_vesca	FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880 FvH4_7g18880
malus_domestica	MD01G1104800.v1.1
prunus_persica	Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1 Prupe.2G210100_v2.0.a1
pyrus_communis	pycom01g13140
rosa_chinensis	RchiOBHm_Chr1g0362831 RchiOBHm_Chr5g0036621 RchiOBHm_Chr7g0239631
rosa_laevigata	RLG00000027619
rosa_multiflora	Rmu_sc0005055.1_g000016 Rmu_sc0006739.1_g000005 Rmu_sc0035177.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293730 Rroxscaffold_5G00347900
rosa_rugosa	Rorug01G0301700 Rorug01G0301800 Rorug06G0050200
rosa_samantha	Rh1AG310600 Rh1BG029700 Rh1BG273700 Rh1CG290900 Rh1DG304500 Rh2CG160200 Rh5CG416200
rosa_wichuraiana	Rw1G027530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	63, 408
AciI	CCGC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	34, 344, 379, 593
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	2 cut(s)	359, 485
AjuI	GAANNNNNNNTTGG	4 cut(s)	26, 58, 371, 403
AluBI	AGCT	9 cut(s)	9, 59, 118, 160, 185, 404, 463, 505, 530
AluI	AGCT	9 cut(s)	9, 59, 118, 160, 185, 404, 463, 505, 530
Alw21I	GWGCWC	1 cut(s)	316
AoxI	GGCC	3 cut(s)	298, 324, 333
ApeKI	GCWGC	4 cut(s)	56, 59, 401, 404
ApoI	RAATTY	1 cut(s)	230
AseI	ATTAAT	2 cut(s)	225, 570
AspLEI	GCGC	2 cut(s)	64, 409
AsuHPI	GGTGA	1 cut(s)	475
AxyI	CCTNAGG	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	316
BbvCI	CCTCAGC	3 cut(s)	186, 321, 531
BbvI	GCAGC	4 cut(s)	46, 68, 391, 413
BccI	CCATC	3 cut(s)	164, 344, 509
BciT130I	CCWGG	2 cut(s)	361, 487
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	4 cut(s)	85, 237, 282, 430
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	5 cut(s)	57, 60, 301, 402, 405
BlsI	GCNGC	5 cut(s)	58, 61, 302, 403, 406
Bme1390I	CCNGG	2 cut(s)	361, 487
BmgBI	CACGTC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	361, 487
BmsI	GCATC	2 cut(s)	135, 480
Bpu10I	CCTNAGC	3 cut(s)	186, 321, 531
Bse21I	CCTNAGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	361, 487
BseGI	GGATG	2 cut(s)	150, 495
BseMI	GCAATG	1 cut(s)	591
BseMII	CTCAG	4 cut(s)	177, 309, 312, 522
BseXI	GCAGC	4 cut(s)	46, 68, 391, 413
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	3 cut(s)	300, 326, 335
BsiHKAI	GWGCWC	1 cut(s)	316
BslFI	GGGAC	2 cut(s)	92, 437
BsmFI	GGGAC	2 cut(s)	92, 437
BsnI	GGCC	3 cut(s)	300, 326, 335
Bsp1286I	GDGCHC	1 cut(s)	316
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	3 cut(s)	300, 326, 335
BspCNI	CTCAG	4 cut(s)	178, 308, 313, 523
BsrDI	GCAATG	1 cut(s)	591
Bst2UI	CCWGG	2 cut(s)	361, 487
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	186, 295, 321, 531
BstF5I	GGATG	2 cut(s)	150, 495
BstHHI	GCGC	2 cut(s)	64, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 242, 332
BstNI	CCWGG	2 cut(s)	361, 487
BstSCI	CCNGG	2 cut(s)	359, 485
BstSFI	CTRYAG	4 cut(s)	85, 237, 282, 430
BstV1I	GCAGC	4 cut(s)	46, 68, 391, 413
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	300, 326, 335
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	150, 495
BtsIMutI	CAGTG	2 cut(s)	225, 570
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	2 cut(s)	64, 409
CviAII	CATG	3 cut(s)	203, 317, 548
DdeI	CTNAG	4 cut(s)	186, 295, 321, 531
EaeI	YGGCCR	1 cut(s)	333
Eco81I	CCTNAGG	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	359, 485
EcoT22I	ATGCAT	2 cut(s)	26, 371
FaeI	CATG	3 cut(s)	206, 320, 551
FaqI	GGGAC	2 cut(s)	92, 437
FatI	CATG	3 cut(s)	202, 316, 547
Fnu4HI	GCNGC	5 cut(s)	57, 60, 301, 402, 405
FokI	GGATG	2 cut(s)	157, 502
Fsp4HI	GCNGC	5 cut(s)	57, 60, 301, 402, 405
FspBI	CTAG	1 cut(s)	141
FspI	TGCGCA	2 cut(s)	63, 408
GlaI	GCGC	2 cut(s)	63, 408
GluI	GCNGC	5 cut(s)	57, 60, 301, 402, 405
HaeIII	GGCC	3 cut(s)	300, 326, 335
HhaI	GCGC	2 cut(s)	64, 409
Hin1II	CATG	3 cut(s)	206, 320, 551
Hin6I	GCGC	2 cut(s)	62, 407
HinP1I	GCGC	2 cut(s)	62, 407
HincII	GTYRAC	2 cut(s)	100, 445
HindII	GTYRAC	2 cut(s)	100, 445
HindIII	AAGCTT	2 cut(s)	116, 461
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	4 cut(s)	77, 100, 422, 445
Hpy188III	TCNNGA	2 cut(s)	163, 508
Hpy8I	GTNNAC	4 cut(s)	77, 100, 422, 445
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	4 cut(s)	15, 24, 369, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 242, 332
HpyF3I	CTNAG	4 cut(s)	186, 295, 321, 531
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	3 cut(s)	206, 320, 551
HspAI	GCGC	2 cut(s)	62, 407
Lsp1109I	GCAGC	4 cut(s)	46, 68, 391, 413
LweI	GCATC	2 cut(s)	135, 480
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	136, 481
MhlI	GDGCHC	1 cut(s)	316
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	3 cut(s)	50, 230, 395
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	24, 369
MnlI	CCTC	5 cut(s)	181, 252, 304, 316, 526
Mox20I	TGGCCA	1 cut(s)	335
Mph1103I	ATGCAT	2 cut(s)	26, 371
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	2 cut(s)	225, 570
MslI	CAYNNNNRTG	2 cut(s)	143, 488
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	3 cut(s)	59, 303, 404
MspR9I	CCNGG	2 cut(s)	361, 487
MvaI	CCWGG	2 cut(s)	361, 487
MwoI	GCNNNNNNNGC	3 cut(s)	21, 242, 332
NlaIII	CATG	3 cut(s)	206, 320, 551
NmuCI	GTSAC	2 cut(s)	136, 481
NsbI	TGCGCA	2 cut(s)	63, 408
NsiI	ATGCAT	2 cut(s)	26, 371
PkrI	GCNGC	5 cut(s)	58, 61, 302, 403, 406
PshBI	ATTAAT	2 cut(s)	225, 570
Psp6I	CCWGG	2 cut(s)	359, 485
PspGI	CCWGG	2 cut(s)	359, 485
PvuII	CAGCTG	2 cut(s)	59, 404
RseI	CAYNNNNRTG	2 cut(s)	143, 488
SaqAI	TTAA	2 cut(s)	225, 570
SatI	GCNGC	5 cut(s)	57, 60, 301, 402, 405
ScrFI	CCNGG	2 cut(s)	361, 487
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	135, 480
SfcI	CTRYAG	4 cut(s)	85, 237, 282, 430
SfiI	GGCCNNNNNGGCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	143, 488
Sse9I	AATT	3 cut(s)	50, 230, 395
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	359, 485
TaiI	ACGT	1 cut(s)	311
TasI	AATT	3 cut(s)	50, 230, 395
TauI	GCSGC	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	225, 570
Tru9I	TTAA	2 cut(s)	225, 570
TscAI	CASTG	2 cut(s)	225, 570
TseFI	GTSAC	2 cut(s)	136, 481
TseI	GCWGC	4 cut(s)	56, 59, 401, 404
Tsp45I	GTSAC	2 cut(s)	136, 481
TspDTI	ATGAA	2 cut(s)	243, 588
TspRI	CASTG	2 cut(s)	225, 570
VspI	ATTAAT	2 cut(s)	225, 570
XapI	RAATTY	1 cut(s)	230
XspI	CTAG	1 cut(s)	141
Zsp2I	ATGCAT	2 cut(s)	26, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.