Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005232.1

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Forward (+)

4563 .. 6906

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

atgtccaaggaggagttggaggacataatcctgcagaaaatctttcttgtatcactcaccgagccctccgaacccgattctcgaatcgtctacttggagatgacggctgcagagattctcagcgtaggcaaggcgatgaggatcagtatagacctcatggagtcgatcctaatcgatcggctcatgggtaatttcgtctctgtcgaaccaccttttcagtacctagttggctgctacaaacgtgccgatgatgagtgtaagaagattacttctgtgaaaaataaggatttgaggtcttatatggaatctattattaggcaagccaagaagctgtcggtgtcgtatggtaggattcacttggggaacccggaagcgtttcctagtccaggtgggaattcaaataactcaataactgcgtcccctttgttgccgttgattttctcagaggttgcaagttcagtggatggatttggaggaagcagtagtagcccacctgggtttttggatgagttctttcgtgactcggattttgatatgttggaccccattttgaagggtttatatgaagaacttatggagactgtgcaaaatgtttcggcacttggaaactttcagcagccattgatggctctgttgtttttggttagtttcccagctggtgccaagtctcttgtgaatcacccaaggtggattcccaaaggagtcttgaatggccgtggtattgaaaagacaagtattttaggtcctttctttcatgtcagtgccctgtctgaccatcctttttctgttagtgagttcttttcagaaggttctaacacagctgataaatcttcgtacgtgacgattaagacagtgatgaacaatttatatgatggcctcgcacaagttctcctcacgctactgaaaaatccagacaccagcgagaaagttctcgagtatcttgctgtggttatcaacaagaactcatcaagagctcatatgcaagtggatcctctttcctgcgcaagttcggggatgtttgtcaatctcagtgcggtcatgcttcggctttgcgggccgcttttagatgcaaacttaaccaaaagagacaaaatttatccgaaatatgtgttctcaggtaaccgtctggagttgagaggtttgacagctctacatgctacatctgaggaagttactgaatggattagtaaagataacatgagcgctcaatattcttttaattgcgagtgcttcttcatgactgcgagggtgctcaatctgggtttattgaaagcattttctgaccataaacatttagaagagaacattcgcaggtttaaagaagcacttaatgccatcaaagacctgggttctccacagttgaacactaacatagctcagctcgagaaagaaataaagttgttagaacaggaaaggcattgctacgaagctcagatagtaagcgatgaaccacttgtacagcaggcgatttctttctaccggttgatggtggtgtggctaggtggcttggttggtggatttaaaatgcctctgccatcaacgtgccccgtagaatttgcatctatgccagagcattttgtggaagatgccatggagtttattttatttgcttcccggattccaaaagcatttagtgggatcttgttggatgattttatgaacttcataataatgttcatggcaagtccggaatatatcaggaacccttatctaagatcaaagatggttgaagtcctcaactgcttgatgcccggtggaaatcgaccatctgctgctcctcctactctgttcaaagagcacaaactgtctcttgagtatcttgtaaggaatctcttgaaactatatgtggatgttgagttgactggttctcacacacagttgtatgacaagtttaacatccggcacaaaattgctaagcttctcgagtatctgtggcaagtacctagtcatcgaaatgcttggaaaaaggttgctaaggaagaggagaagggcgtatatttgaattacttaaacttcttgatcaatgacagtatatatcttctggataacagttttaaaacgattcttgaacacaaacaactggaagccgagatgtcaaacaatgcagactggaagcgtcgacctgctcgagagaggaaggagaaagctcacctcttccactcgcaggaaaagattatccaaactcatttgacgctcgcaaatgaagatctgaatacgctggcatttacttcagaacagattacagctcctttcctactcccagagatggttgaaagggtggcaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

762

Amino Acids

86.15

Weight (kDa)

5.91

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	247 - 762	6.4e-148	Ubiquitin elongating factor core

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1003
Acc36I	ACCTGC	2 cut(s)	1302, 2131
AccB1I	GGYRCC	1 cut(s)	659
AccI	GTMKAC	2 cut(s)	90, 2119
AccIII	TCCGGA	1 cut(s)	1687
AciI	CCGC	3 cut(s)	1034, 1053, 1058
AclWI	GGATC	5 cut(s)	149, 160, 983, 996, 1646
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	3 cut(s)	394, 1092, 1553
AcuI	CTGAAG	1 cut(s)	2214
AfaI	GTAC	4 cut(s)	221, 836, 1458, 1941
AfeI	AGCGCT	1 cut(s)	1204
AfiI	CCNNNNNNNGG	4 cut(s)	386, 1486, 2164, 2266
AgeI	ACCGGT	1 cut(s)	1479
AjnI	CCWGG	3 cut(s)	385, 493, 1344
Alw21I	GWGCWC	3 cut(s)	976, 1254, 1800
Alw26I	GTCTC	5 cut(s)	202, 572, 672, 1080, 1812
AlwI	GGATC	5 cut(s)	149, 160, 983, 996, 1646
Ama87I	CYCGRG	4 cut(s)	932, 1382, 1922, 2127
Aor13HI	TCCGGA	1 cut(s)	1687
Aor51HI	AGCGCT	1 cut(s)	1204
AoxI	GGCC	3 cut(s)	712, 874, 1055
ApeKI	GCWGC	4 cut(s)	107, 231, 616, 1772
ApoI	RAATTY	3 cut(s)	394, 1092, 1553
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AsiGI	ACCGGT	1 cut(s)	1479
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	2 cut(s)	1004, 1205
AspS9I	GGNCC	3 cut(s)	541, 743, 1055
AsuC2I	CCSGG	3 cut(s)	368, 1615, 1752
AsuHPI	GGTGA	3 cut(s)	49, 671, 2141
AvaI	CYCGRG	4 cut(s)	932, 1382, 1922, 2127
AvaII	GGWCC	2 cut(s)	541, 743
BaeGI	GKGCMC	2 cut(s)	766, 1547
BamHI	GGATCC	1 cut(s)	988
BanI	GGYRCC	1 cut(s)	659
BanII	GRGCYC	2 cut(s)	66, 976
Bbv12I	GWGCWC	3 cut(s)	976, 1254, 1800
BbvI	GCAGC	4 cut(s)	94, 218, 628, 1759
BceAI	ACGGC	3 cut(s)	120, 415, 699
BcgI	CGANNNNNNTGC	2 cut(s)	923, 957
BciT130I	CCWGG	3 cut(s)	387, 495, 1346
BclI	TGATCA	1 cut(s)	2019
BcnI	CCSGG	3 cut(s)	368, 1615, 1752
BcoDI	GTCTC	5 cut(s)	202, 572, 672, 1080, 1812
BfaI	CTAG	4 cut(s)	224, 381, 1499, 1944
BfmI	CTRYAG	2 cut(s)	32, 108
BfoI	RGCGCY	1 cut(s)	1206
BfuAI	ACCTGC	2 cut(s)	1302, 2131
BglII	AGATCT	1 cut(s)	2206
BisI	GCNGC	5 cut(s)	108, 232, 617, 1058, 1773
BlpI	GCTNAGC	2 cut(s)	1377, 1914
BlsI	GCNGC	5 cut(s)	109, 233, 618, 1059, 1774
Bme1390I	CCNGG	6 cut(s)	368, 387, 495, 1346, 1615, 1752
Bme18I	GGWCC	2 cut(s)	541, 743
BmeT110I	CYCGRG	4 cut(s)	932, 1382, 1922, 2127
BmgT120I	GGNCC	3 cut(s)	541, 743, 1055
BmiI	GGNNCC	5 cut(s)	365, 543, 661, 990, 1703
BmrFI	CCNGG	6 cut(s)	368, 387, 495, 1346, 1615, 1752
BmsI	GCATC	4 cut(s)	1057, 1568, 1576, 1737
BpmI	CTGGAG	1 cut(s)	1148
Bpu10I	CCTNAGC	1 cut(s)	1974
Bpu1102I	GCTNAGC	2 cut(s)	1377, 1914
BpuEI	CTTGAG	1 cut(s)	1832
BpuMI	CCSGG	3 cut(s)	368, 1615, 1752
Bsa29I	ATCGAT	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	838
BsaBI	GATNNNNATC	2 cut(s)	140, 170
BsaJI	CCNNGG	6 cut(s)	6, 494, 683, 715, 1345, 1590
BsaWI	WCCGGW	2 cut(s)	1479, 1687
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bsc4I	CCNNNNNNNGG	4 cut(s)	386, 1486, 2164, 2266
Bse118I	RCCGGY	1 cut(s)	1479
Bse1I	ACTGG	3 cut(s)	1867, 2085, 2114
Bse3DI	GCAATG	1 cut(s)	1417
Bse8I	GATNNNNATC	2 cut(s)	140, 170
BseAI	TCCGGA	1 cut(s)	1687
BseBI	CCWGG	3 cut(s)	387, 495, 1346
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	6 cut(s)	6, 494, 683, 715, 1345, 1590
BseGI	GGATG	7 cut(s)	469, 511, 775, 1020, 1654, 1855, 1896
BseJI	GATNNNNATC	2 cut(s)	140, 170
BseLI	CCNNNNNNNGG	4 cut(s)	386, 1486, 2164, 2266
BseMI	GCAATG	1 cut(s)	1417
BseMII	CTCAG	7 cut(s)	133, 456, 1042, 1128, 1155, 1391, 1445
BseNI	ACTGG	3 cut(s)	1867, 2085, 2114
BseRI	GAGGAG	4 cut(s)	26, 881, 1767, 1997
BseSI	GKGCMC	2 cut(s)	766, 1547
BseXI	GCAGC	4 cut(s)	94, 218, 628, 1759
BseYI	CCCAGC	1 cut(s)	652
Bsh1285I	CGRYCG	1 cut(s)	178
BshFI	GGCC	3 cut(s)	714, 876, 1057
BshNI	GGYRCC	1 cut(s)	659
BshTI	ACCGGT	1 cut(s)	1479
BshVI	ATCGAT	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	178
BsiHKAI	GWGCWC	3 cut(s)	976, 1254, 1800
BsiHKCI	CYCGRG	4 cut(s)	932, 1382, 1922, 2127
BsiSI	CCGG	6 cut(s)	368, 1480, 1615, 1688, 1752, 1900
BsiWI	CGTACG	1 cut(s)	834
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	4 cut(s)	386, 1486, 2164, 2266
BsmAI	GTCTC	5 cut(s)	202, 572, 672, 1080, 1812
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	714, 876, 1057
BsoBI	CYCGRG	4 cut(s)	932, 1382, 1922, 2127
Bsp1286I	GDGCHC	6 cut(s)	66, 766, 976, 1254, 1547, 1800
Bsp13I	TCCGGA	1 cut(s)	1687
Bsp1407I	TGTACA	1 cut(s)	1456
Bsp143I	GATC	8 cut(s)	141, 165, 175, 988, 1638, 1715, 2019, 2206
Bsp1720I	GCTNAGC	2 cut(s)	1377, 1914
Bsp19I	CCATGG	1 cut(s)	1590
BspACI	CCGC	3 cut(s)	1034, 1053, 1058
BspANI	GGCC	3 cut(s)	714, 876, 1057
BspCNI	CTCAG	7 cut(s)	132, 455, 1041, 1127, 1156, 1390, 1444
BspDI	ATCGAT	1 cut(s)	174
BspEI	TCCGGA	1 cut(s)	1687
BspHI	TCATGA	1 cut(s)	1236
BspLI	GGNNCC	5 cut(s)	365, 543, 661, 990, 1703
BspMAI	CTGCAG	2 cut(s)	36, 112
BspMI	ACCTGC	2 cut(s)	1302, 2131
BspPI	GGATC	5 cut(s)	149, 160, 983, 996, 1646
BspT107I	GGYRCC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	1417
BsrFI	RCCGGY	1 cut(s)	1479
BsrGI	TGTACA	1 cut(s)	1456
BsrI	ACTGG	3 cut(s)	1867, 2085, 2114
BssAI	RCCGGY	1 cut(s)	1479
BssECI	CCNNGG	6 cut(s)	6, 494, 683, 715, 1345, 1590
BssMI	GATC	8 cut(s)	141, 165, 175, 988, 1638, 1715, 2019, 2206
BssT1I	CCWWGG	3 cut(s)	6, 683, 1590
Bst2UI	CCWGG	3 cut(s)	387, 495, 1346
Bst4CI	ACNGT	8 cut(s)	583, 853, 1124, 1359, 1806, 1878, 2030, 2051
Bst6I	CTCTTC	3 cut(s)	1293, 1974, 2159
BstAPI	GCANNNNNTGC	1 cut(s)	1331
BstAUI	TGTACA	1 cut(s)	1456
BstBAI	YACGTR	1 cut(s)	838
BstC8I	GCNNGC	6 cut(s)	321, 1055, 1464, 2196, 2220, 2284
BstDSI	CCRYGG	2 cut(s)	715, 1590
BstEII	GGTNACC	1 cut(s)	1118
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	7 cut(s)	469, 511, 775, 1020, 1654, 1855, 1896
BstH2I	RGCGCY	1 cut(s)	1206
BstHHI	GCGC	2 cut(s)	1004, 1205
BstKTI	GATC	8 cut(s)	144, 168, 178, 991, 1641, 1718, 2022, 2209
BstMAI	GTCTC	5 cut(s)	202, 572, 672, 1080, 1812
BstMBI	GATC	8 cut(s)	141, 165, 175, 988, 1638, 1715, 2019, 2206
BstMCI	CGRYCG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	4 cut(s)	486, 1054, 1154, 1331
BstNI	CCWGG	3 cut(s)	387, 495, 1346
BstNSI	RCATGY	1 cut(s)	1157
BstPI	GGTNACC	1 cut(s)	1118
BstSCI	CCNGG	6 cut(s)	366, 385, 493, 1344, 1613, 1750
BstSFI	CTRYAG	2 cut(s)	32, 108
BstSLI	GKGCMC	2 cut(s)	766, 1547
BstV1I	GCAGC	4 cut(s)	94, 218, 628, 1759
BstX2I	RGATCY	3 cut(s)	988, 1638, 2206
BstYI	RGATCY	3 cut(s)	988, 1638, 2206
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	714, 876, 1057
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	2 cut(s)	715, 1590
BtgZI	GCGATG	2 cut(s)	149, 1458
BtsCI	GGATG	7 cut(s)	469, 511, 775, 1020, 1654, 1855, 1896
BtsIMutI	CAGTG	4 cut(s)	465, 766, 858, 1036
BveI	ACCTGC	2 cut(s)	1302, 2131
Cac8I	GCNNGC	6 cut(s)	321, 1055, 1464, 2196, 2220, 2284
CciI	TCATGA	1 cut(s)	1236
CfoI	GCGC	2 cut(s)	1004, 1205
Cfr10I	RCCGGY	1 cut(s)	1479
Cfr13I	GGNCC	3 cut(s)	541, 743, 1055
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	3 cut(s)	405, 2105, 2200
Csp6I	GTAC	4 cut(s)	220, 835, 1457, 1940
CspAI	ACCGGT	1 cut(s)	1479
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	9 cut(s)	157, 184, 755, 1039, 1154, 1198, 1237, 1591, 1678
CviQI	GTAC	4 cut(s)	220, 835, 1457, 1940
DpnI	GATC	8 cut(s)	143, 167, 177, 990, 1640, 1717, 2021, 2208
DpnII	GATC	8 cut(s)	141, 165, 175, 988, 1638, 1715, 2019, 2206
DraI	TTTAAA	3 cut(s)	1318, 1522, 2056
EaeI	YGGCCR	1 cut(s)	712
Eam1104I	CTCTTC	3 cut(s)	1293, 1974, 2159
EarI	CTCTTC	3 cut(s)	1293, 1974, 2159
Ecl136II	GAGCTC	1 cut(s)	974
Eco130I	CCWWGG	3 cut(s)	6, 683, 1590
Eco24I	GRGCYC	2 cut(s)	66, 976
Eco47I	GGWCC	2 cut(s)	541, 743
Eco47III	AGCGCT	1 cut(s)	1204
Eco53kI	GAGCTC	1 cut(s)	974
Eco57I	CTGAAG	1 cut(s)	2214
Eco88I	CYCGRG	4 cut(s)	932, 1382, 1922, 2127
Eco91I	GGTNACC	1 cut(s)	1118
EcoICRI	GAGCTC	1 cut(s)	974
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	743
EcoO65I	GGTNACC	1 cut(s)	1118
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	3 cut(s)	385, 493, 1344
EcoT14I	CCWWGG	3 cut(s)	6, 683, 1590
EcoT38I	GRGCYC	2 cut(s)	66, 976
ErhI	CCWWGG	3 cut(s)	6, 683, 1590
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	9 cut(s)	160, 187, 758, 1042, 1157, 1201, 1240, 1594, 1681
FalI	AAGNNNNNCTT	2 cut(s)	1311, 1343
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	9 cut(s)	156, 183, 754, 1038, 1153, 1197, 1236, 1590, 1677
FauI	CCCGC	1 cut(s)	1046
FauNDI	CATATG	1 cut(s)	978
FbaI	TGATCA	1 cut(s)	2019
FblI	GTMKAC	2 cut(s)	90, 2119
Fnu4HI	GCNGC	5 cut(s)	108, 232, 617, 1058, 1773
FokI	GGATG	7 cut(s)	476, 518, 762, 1027, 1661, 1862, 1883
FriOI	GRGCYC	2 cut(s)	66, 976
Fsp4HI	GCNGC	5 cut(s)	108, 232, 617, 1058, 1773
FspBI	CTAG	4 cut(s)	224, 381, 1499, 1944
FspI	TGCGCA	1 cut(s)	1003
GlaI	GCGC	2 cut(s)	1003, 1204
GluI	GCNGC	5 cut(s)	108, 232, 617, 1058, 1773
GsaI	CCCAGC	1 cut(s)	656
GsuI	CTGGAG	1 cut(s)	1148
HaeII	RGCGCY	1 cut(s)	1206
HaeIII	GGCC	3 cut(s)	714, 876, 1057
HapII	CCGG	6 cut(s)	368, 1480, 1615, 1688, 1752, 1900
HgaI	GACGC	3 cut(s)	405, 2105, 2200
HhaI	GCGC	2 cut(s)	1004, 1205
Hin1II	CATG	9 cut(s)	160, 187, 758, 1042, 1157, 1201, 1240, 1594, 1681
Hin6I	GCGC	2 cut(s)	1002, 1203
HinP1I	GCGC	2 cut(s)	1002, 1203
HincII	GTYRAC	2 cut(s)	1860, 2120
HindII	GTYRAC	2 cut(s)	1860, 2120
HindIII	AAGCTT	1 cut(s)	1916
HpaII	CCGG	6 cut(s)	368, 1480, 1615, 1688, 1752, 1900
HphI	GGTGA	3 cut(s)	49, 671, 2141
Hpy166II	GTNNAC	3 cut(s)	91, 1860, 2120
Hpy8I	GTNNAC	3 cut(s)	91, 1860, 2120
Hpy99I	CGWCG	1 cut(s)	2121
HpyAV	CCTTC	4 cut(s)	547, 800, 1981, 2131
HpyCH4III	ACNGT	8 cut(s)	583, 853, 1124, 1359, 1806, 1878, 2030, 2051
HpyCH4IV	ACGT	3 cut(s)	241, 837, 1541
HpyCH4V	TGCA	8 cut(s)	34, 110, 452, 586, 982, 1070, 1559, 2105
HpyF10VI	GCNNNNNNNGC	4 cut(s)	486, 1054, 1154, 1331
HpySE526I	ACGT	3 cut(s)	241, 837, 1541
Hsp92II	CATG	9 cut(s)	160, 187, 758, 1042, 1157, 1201, 1240, 1594, 1681
HspAI	GCGC	2 cut(s)	1002, 1203
Kpn2I	TCCGGA	1 cut(s)	1687
Ksp22I	TGATCA	1 cut(s)	2019
Kzo9I	GATC	8 cut(s)	141, 165, 175, 988, 1638, 1715, 2019, 2206
LmnI	GCTCC	2 cut(s)	1780, 2251
Lsp1109I	GCAGC	4 cut(s)	94, 218, 628, 1759
LweI	GCATC	4 cut(s)	1057, 1568, 1576, 1737
MaeI	CTAG	4 cut(s)	224, 381, 1499, 1944
MaeII	ACGT	3 cut(s)	241, 837, 1541
MaeIII	GTNAC	4 cut(s)	518, 838, 1118, 1171
MalI	GATC	8 cut(s)	143, 167, 177, 990, 1640, 1717, 2021, 2208
MboI	GATC	8 cut(s)	141, 165, 175, 988, 1638, 1715, 2019, 2206
MflI	RGATCY	3 cut(s)	988, 1638, 2206
MhlI	GDGCHC	6 cut(s)	66, 766, 976, 1254, 1547, 1800
MluCI	AATT	8 cut(s)	190, 394, 862, 1092, 1219, 1553, 1908, 2002
MlyI	GAGTC	3 cut(s)	170, 515, 711
MmeI	TCCRAC	2 cut(s)	519, 1626
MroI	TCCGGA	1 cut(s)	1687
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	9 cut(s)	846, 1076, 1218, 1317, 1329, 1521, 1893, 2009, 2055
MslI	CAYNNNNRTG	4 cut(s)	759, 1540, 1670, 1953
MspA1I	CMGCKG	2 cut(s)	656, 821
MspI	CCGG	6 cut(s)	368, 1480, 1615, 1688, 1752, 1900
MspR9I	CCNGG	6 cut(s)	368, 387, 495, 1346, 1615, 1752
MvaI	CCWGG	3 cut(s)	387, 495, 1346
MwoI	GCNNNNNNNGC	4 cut(s)	486, 1054, 1154, 1331
NciI	CCSGG	3 cut(s)	368, 1615, 1752
NcoI	CCATGG	1 cut(s)	1590
NdeI	CATATG	1 cut(s)	978
NdeII	GATC	8 cut(s)	141, 165, 175, 988, 1638, 1715, 2019, 2206
NlaIII	CATG	9 cut(s)	160, 187, 758, 1042, 1157, 1201, 1240, 1594, 1681
NlaIV	GGNNCC	5 cut(s)	365, 543, 661, 990, 1703
NmeAIII	GCCGAG	1 cut(s)	2113
NmuCI	GTSAC	2 cut(s)	518, 838
NsbI	TGCGCA	1 cut(s)	1003
NspI	RCATGY	1 cut(s)	1157
PaeR7I	CTCGAG	4 cut(s)	932, 1382, 1922, 2127
PagI	TCATGA	1 cut(s)	1236
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 839, 2125
PdmI	GAANNNNTTC	1 cut(s)	375
Pfl23II	CGTACG	1 cut(s)	834
PfoI	TCCNGGA	1 cut(s)	1613
PinAI	ACCGGT	1 cut(s)	1479
PkrI	GCNGC	5 cut(s)	109, 233, 618, 1059, 1774
Ple19I	CGATCG	1 cut(s)	178
PleI	GAGTC	3 cut(s)	169, 515, 710
PpsI	GAGTC	3 cut(s)	169, 515, 710
Ppu21I	YACGTR	1 cut(s)	838
PpuMI	RGGWCCY	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	976
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	3 cut(s)	385, 493, 1344
PspEI	GGTNACC	1 cut(s)	1118
PspFI	CCCAGC	1 cut(s)	652
PspGI	CCWGG	3 cut(s)	385, 493, 1344
PspLI	CGTACG	1 cut(s)	834
PspN4I	GGNNCC	5 cut(s)	365, 543, 661, 990, 1703
PspPI	GGNCC	3 cut(s)	541, 743, 1055
PspPPI	RGGWCCY	1 cut(s)	743
PsrI	GAACNNNNNNTAC	2 cut(s)	1440, 1472
PstI	CTGCAG	2 cut(s)	36, 112
PsuI	RGATCY	3 cut(s)	988, 1638, 2206
PvuI	CGATCG	1 cut(s)	178
PvuII	CAGCTG	2 cut(s)	656, 821
RsaI	GTAC	4 cut(s)	221, 836, 1458, 1941
RsaNI	GTAC	4 cut(s)	220, 835, 1457, 1940
RseI	CAYNNNNRTG	4 cut(s)	759, 1540, 1670, 1953
SacI	GAGCTC	1 cut(s)	976
SalI	GTCGAC	1 cut(s)	2118
SaqAI	TTAA	9 cut(s)	846, 1076, 1218, 1317, 1329, 1521, 1893, 2009, 2055
SatI	GCNGC	5 cut(s)	108, 232, 617, 1058, 1773
Sau3AI	GATC	8 cut(s)	141, 165, 175, 988, 1638, 1715, 2019, 2206
Sau96I	GGNCC	3 cut(s)	541, 743, 1055
SchI	GAGTC	3 cut(s)	170, 515, 711
ScrFI	CCNGG	6 cut(s)	368, 387, 495, 1346, 1615, 1752
SduI	GDGCHC	6 cut(s)	66, 766, 976, 1254, 1547, 1800
SfaNI	GCATC	4 cut(s)	1057, 1568, 1576, 1737
SfcI	CTRYAG	2 cut(s)	32, 108
Sfr274I	CTCGAG	4 cut(s)	932, 1382, 1922, 2127
SinI	GGWCC	2 cut(s)	541, 743
SlaI	CTCGAG	4 cut(s)	932, 1382, 1922, 2127
SmiMI	CAYNNNNRTG	4 cut(s)	759, 1540, 1670, 1953
SmlI	CTYRAG	5 cut(s)	932, 1382, 1811, 1922, 2127
SmoI	CTYRAG	5 cut(s)	932, 1382, 1811, 1922, 2127
Sse9I	AATT	8 cut(s)	190, 394, 862, 1092, 1219, 1553, 1908, 2002
SsiI	CCGC	3 cut(s)	1034, 1053, 1058
SspI	AATATT	1 cut(s)	1211
SspMI	CTAG	4 cut(s)	224, 381, 1499, 1944
SstI	GAGCTC	1 cut(s)	976
StyD4I	CCNGG	6 cut(s)	366, 385, 493, 1344, 1613, 1750
StyI	CCWWGG	3 cut(s)	6, 683, 1590
TaaI	ACNGT	8 cut(s)	583, 853, 1124, 1359, 1806, 1878, 2030, 2051
TaiI	ACGT	3 cut(s)	244, 840, 1544
TasI	AATT	8 cut(s)	190, 394, 862, 1092, 1219, 1553, 1908, 2002
TatI	WGTACW	1 cut(s)	1456
TauI	GCSGC	1 cut(s)	1060
Tru1I	TTAA	9 cut(s)	846, 1076, 1218, 1317, 1329, 1521, 1893, 2009, 2055
Tru9I	TTAA	9 cut(s)	846, 1076, 1218, 1317, 1329, 1521, 1893, 2009, 2055
TscAI	CASTG	4 cut(s)	465, 766, 858, 1036
TseFI	GTSAC	2 cut(s)	518, 838
TseI	GCWGC	4 cut(s)	107, 231, 616, 1772
Tsp45I	GTSAC	2 cut(s)	518, 838
TspDTI	ATGAA	9 cut(s)	579, 743, 872, 1225, 1461, 1654, 1666, 1673, 2217
TspRI	CASTG	4 cut(s)	465, 766, 858, 1036
VpaK11BI	GGWCC	2 cut(s)	541, 743
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	3 cut(s)	394, 1092, 1553
XceI	RCATGY	1 cut(s)	1157
XcmI	CCANNNNNNNNNTGG	2 cut(s)	13, 1342
XhoI	CTCGAG	4 cut(s)	932, 1382, 1922, 2127
XmiI	GTMKAC	2 cut(s)	90, 2119
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	4 cut(s)	224, 381, 1499, 1944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.