Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005657.1

Orthogroup ID

OG0004915

Physical Location & Seq

Genomic Coordinates Forward (+)

10957 .. 12546

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atgccaaacccagatctctcagtctccttcatctctcacccgtttcctcttcttctcttcatccttgctcgatgccatcccatcagtgtaaaggcagccaataatccggtcattagatctgaggaagaaccactagagcgaagaagaagagagccagacctacacaaaccgcttctttccgtcctctctcaggcattacttgagtttgaaaagcatagatggcatggcagtgagcttgctcttcctgaaccttctagagatgagattcgggctgatggtagtcaaacttgtggatcaggcaggacactaagggatgctgcagcagtgcagctcgtgccatgcagggttggcactctcaatgcctttcctgaggaacctgagcccaagcggcagaagcttgatgactccatgcttattgcagaagataaatttctggcacagcatccagggcctgttcgtatcaccgtatctgttcctaatgttgatgaaggcaatctcaaaggacaacttttggagatcacagttcagtctttatctgaaattgttggaagtctgaaagagaaaatttctggggagatccagcttccggcaaacaaacagaaattgagtggaaaacctggctttctcaaggacaatttgtctcttgcatattacaatgttggagcaggagaaacacttgctctttcattgagagaacgtggtggtagaaagcggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0005686 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016043 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031323 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065003 GO:0065007 GO:0071004 GO:0071010 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP21_like_P Surp ubiquitin

Protein Analysis

238

Amino Acids

26.31

Weight (kDa)

7.76

Isoelectric Point (pI)

56.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	166 - 233	2.7e-07	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06890
malus_domestica	MD10G1329400.v1.1
pyrus_communis	pycom05g32220 pycom10g27920
rosa_chinensis	RchiOBHm_Chr7g0191091
rosa_laevigata	RLG00000004475
rosa_multiflora	Rmu_sc0005151.1_g000002 Rmu_sc0005657.1_g000002 Rmu_sc0005903.1_g000003 Rmu_sc0005903.1_g000004 Rmu_sc0005903.1_g000005 Rmu_sc0013941.1_g000002 Rmu_sc0034959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264050 Rroxscaffold_5G00351920
rosa_rugosa	Rorug01G0317000 Rorug01G0317100
rosa_samantha	Rh1AG145900 Rh1AG325300 Rh3BG312100 Rh4AG053700 Rh4BG051600 Rh4DG247700 Rh7AG116000 Rh7BG117500 Rh7CG120900 Rh7DG298100
rosa_wichuraiana	Rw1G028860 Rw7G010070 Rw7G010160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	170, 388, 712
AclWI	GGATC	2 cut(s)	301, 571
AcsI	RAATTY	2 cut(s)	428, 564
AfiI	CCNNNNNNNGG	2 cut(s)	190, 586
AgsI	TTSAA	1 cut(s)	209
AhdI	GACNNNNNGTC	1 cut(s)	637
AjnI	CCWGG	2 cut(s)	445, 616
AluBI	AGCT	4 cut(s)	235, 331, 397, 583
AluI	AGCT	4 cut(s)	235, 331, 397, 583
Alw26I	GTCTC	2 cut(s)	28, 645
AlwI	GGATC	2 cut(s)	301, 571
AlwNI	CAGNNNCTG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	4 cut(s)	95, 317, 320, 328
ApoI	RAATTY	2 cut(s)	428, 564
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	29, 454
AxyI	CCTNAGG	1 cut(s)	369
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	1 cut(s)	332
BbvI	GCAGC	4 cut(s)	107, 304, 332, 340
BccI	CCATC	4 cut(s)	84, 89, 213, 269
BciT130I	CCWGG	2 cut(s)	447, 618
BcoDI	GTCTC	2 cut(s)	28, 645
BfaI	CTAG	2 cut(s)	134, 255
BfmI	CTRYAG	1 cut(s)	318
BglI	GCCNNNNNGGC	1 cut(s)	388
BglII	AGATCT	2 cut(s)	13, 116
BisI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
BlsI	GCNGC	5 cut(s)	97, 319, 322, 330, 390
Bme1390I	CCNGG	2 cut(s)	447, 618
BmeRI	GACNNNNNGTC	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	2 cut(s)	447, 618
BmsI	GCATC	3 cut(s)	62, 304, 451
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	221, 611
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 586
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	447, 618
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	4 cut(s)	60, 76, 319, 442
BseLI	CCNNNNNNNGG	2 cut(s)	190, 586
BseMII	CTCAG	5 cut(s)	33, 111, 203, 360, 369
BseXI	GCAGC	4 cut(s)	107, 304, 332, 340
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	451
BsiSI	CCGG	2 cut(s)	107, 587
BslI	CCNNNNNNNGG	2 cut(s)	190, 586
BsmAI	GTCTC	2 cut(s)	28, 645
BsnI	GGCC	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	5 cut(s)	13, 116, 293, 516, 576
BspACI	CCGC	3 cut(s)	170, 388, 712
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	5 cut(s)	32, 112, 202, 361, 370
BspLI	GGNNCC	1 cut(s)	375
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	2 cut(s)	301, 571
BspQI	GCTCTTC	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	5 cut(s)	13, 116, 293, 516, 576
BssSI	CACGAG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	2 cut(s)	447, 618
Bst4CI	ACNGT	2 cut(s)	466, 523
Bst6I	CTCTTC	4 cut(s)	54, 62, 142, 246
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	6 cut(s)	19, 120, 189, 308, 369, 378
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	4 cut(s)	60, 76, 319, 442
BstKTI	GATC	5 cut(s)	16, 119, 296, 519, 579
BstMAI	GTCTC	2 cut(s)	28, 645
BstMBI	GATC	5 cut(s)	13, 116, 293, 516, 576
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 334, 348, 388, 394, 448
BstNI	CCWGG	2 cut(s)	447, 618
BstSCI	CCNGG	2 cut(s)	445, 616
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	4 cut(s)	107, 304, 332, 340
BstX2I	RGATCY	3 cut(s)	13, 116, 576
BstYI	RGATCY	3 cut(s)	13, 116, 576
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	4 cut(s)	60, 76, 319, 442
BtsI	GCAGTG	2 cut(s)	235, 330
BtsIMutI	CAGTG	3 cut(s)	91, 235, 330
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr13I	GGNCC	1 cut(s)	449
CviAII	CATG	3 cut(s)	224, 339, 409
DdeI	CTNAG	6 cut(s)	19, 120, 189, 308, 369, 378
DpnI	GATC	5 cut(s)	15, 118, 295, 518, 578
DpnII	GATC	5 cut(s)	13, 116, 293, 516, 576
DriI	GACNNNNNGTC	1 cut(s)	637
Eam1104I	CTCTTC	4 cut(s)	54, 62, 142, 246
Eam1105I	GACNNNNNGTC	1 cut(s)	637
EarI	CTCTTC	4 cut(s)	54, 62, 142, 246
Eco24I	GRGCYC	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	445, 616
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	3 cut(s)	227, 342, 412
FaiI	YATR	5 cut(s)	216, 225, 340, 410, 649
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FatI	CATG	3 cut(s)	223, 338, 408
Fnu4HI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
FokI	GGATG	4 cut(s)	47, 63, 326, 429
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
FspBI	CTAG	2 cut(s)	134, 255
GluI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	2 cut(s)	107, 587
Hin1II	CATG	3 cut(s)	227, 342, 412
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	265, 404
HpaII	CCGG	2 cut(s)	107, 587
HphI	GGTGA	2 cut(s)	29, 454
Hpy188I	TCNGA	3 cut(s)	121, 538, 555
Hpy188III	TCNNGA	3 cut(s)	245, 255, 368
HpyAV	CCTTC	3 cut(s)	37, 261, 482
HpyCH4III	ACNGT	2 cut(s)	466, 523
HpyCH4IV	ACGT	1 cut(s)	697
HpyCH4V	TGCA	5 cut(s)	320, 328, 342, 419, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 334, 348, 388, 394, 448
HpyF3I	CTNAG	6 cut(s)	19, 120, 189, 308, 369, 378
HpySE526I	ACGT	1 cut(s)	697
Hsp92II	CATG	3 cut(s)	227, 342, 412
Kzo9I	GATC	5 cut(s)	13, 116, 293, 516, 576
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	4 cut(s)	107, 304, 332, 340
LweI	GCATC	3 cut(s)	62, 304, 451
MaeI	CTAG	2 cut(s)	134, 255
MaeII	ACGT	1 cut(s)	697
MalI	GATC	5 cut(s)	15, 118, 295, 518, 578
MboI	GATC	5 cut(s)	13, 116, 293, 516, 576
MboII	GAAGA	9 cut(s)	41, 44, 49, 137, 153, 156, 159, 233, 434
MflI	RGATCY	3 cut(s)	13, 116, 576
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	5 cut(s)	428, 540, 564, 602, 634
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	526, 640
MnlI	CCTC	4 cut(s)	57, 115, 194, 364
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	2 cut(s)	107, 587
MspR9I	CCNGG	2 cut(s)	447, 618
MvaI	CCWGG	2 cut(s)	447, 618
MwoI	GCNNNNNNNGC	6 cut(s)	220, 334, 348, 388, 394, 448
NdeII	GATC	5 cut(s)	13, 116, 293, 516, 576
NlaIII	CATG	3 cut(s)	227, 342, 412
NlaIV	GGNNCC	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	5 cut(s)	97, 319, 322, 330, 390
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	445, 616
PspGI	CCWGG	2 cut(s)	445, 616
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	13, 116, 576
RseI	CAYNNNNRTG	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	246
SatI	GCNGC	5 cut(s)	96, 318, 321, 329, 389
Sau3AI	GATC	5 cut(s)	13, 116, 293, 516, 576
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	447, 618
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	9 cut(s)	162, 237, 253, 333, 379, 399, 585, 619, 700
SfaNI	GCATC	3 cut(s)	62, 304, 451
SfcI	CTRYAG	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	200, 626
SmoI	CTYRAG	2 cut(s)	200, 626
Sse9I	AATT	5 cut(s)	428, 540, 564, 602, 634
SsiI	CCGC	3 cut(s)	170, 388, 712
SspMI	CTAG	2 cut(s)	134, 255
StyD4I	CCNGG	2 cut(s)	445, 616
TaaI	ACNGT	2 cut(s)	466, 523
TaiI	ACGT	1 cut(s)	700
TaqI	TCGA	1 cut(s)	70
TasI	AATT	5 cut(s)	428, 540, 564, 602, 634
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	1 cut(s)	265
TscAI	CASTG	3 cut(s)	91, 235, 330
TseI	GCWGC	4 cut(s)	95, 317, 320, 328
TspDTI	ATGAA	4 cut(s)	19, 49, 501, 675
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	91, 235, 330
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	428, 564
XbaI	TCTAGA	1 cut(s)	254
XspI	CTAG	2 cut(s)	134, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.