Rmu_sc0005784.1_g000017

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005784.1
OG0006232
Physical Location & Seq
Forward (+)
72276 .. 76182
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2556 bp
atgatgctgcagccccgctcagacctcgacagcgacgctaatagggccggaagcatcccagacagcttttggacagcaatcgaggtcggaggaggtcgaggttgtaggtttctgggcagcaacctcacctgcaacctcgtcgtcggcgactccacccgactgcagactgcggaggcgttccaagcggcgacgacggcgcgcggcttgcaggaaggaggccgaaggcatctcggactgttctgggcagcgttcgtggtcggaggaggtcggggttgcaagttttctgggcagccctacaacgacttcgccggctactccactgactgcagacctctctgtctgacccctggcgtccttccggcaacccccgccgatccgtcacaccccgagcagagctgcagcgtcgctgtcggcactttagcaaaattaaggcagctccatgcccacctcattcaaaattccctccaccaccaaaaccaatgggtgtcattgctcatcaaccaatgcacacgcctccgtgcaccgccgccttatactcgtctcatcttcgactctacgccttgccccaacatccatgtcttcacctccatgctcaaatattacgcccctttgggcaatgttttctctaatcaagttgtttcactatatcaactaatgcagcgttgcgaggacgtatgtcttggtacctttgtgtacccagttttgatcaaatcgtccggcagtgctggcattgcgttccacgctcatgtagtgaagttgggtcttggttctgatcattatgttcgcaatgccatcatgagcgtgtattcgaaatatgggccggttgagcatgcccgagacgtgttcgatgaaatgcctgagaggagtcttgtggattggaacaacatgatttctgggtattggaagtgggggaataaagttgaagcgtgtaaactgtttgatatgatgcctgagaagagtgttgttacttggactgctatggttaccgggtacgctaggatgaaggatttggagaatgcaagaaggtattttgataatattccggagaaaaatgtggtgtcgtggaatgcaatgctctcggcttatgctcagaatggatctccagaggagactttgagattgtttgatggcatgatggattctggagataaaccaaatgaaactacatgggcaattgtcatttcagcgtgttcgtcatgtggtaatagttccattgcagattcgtttatccaaaagctcaaccagaagcggatgcatttaagttattttggcaaaactgcgatgcttgatatgtatgcaaagcgtgggagcatcaagagtgctagagaagtttttgatgaattgggggtgtataagagctctgggacttggaatgccatgatatcagcatatgcaagagttgggaatttgacttcagctagagagctctttgataagatgccggaaagagatgttgtctcatggaactcgatgatttctggctatgctcagaatggacagtccactattgcaattgatctcttcaaagatatgactgctgctgataaccccaaaccaaatgaagtcactatggtcagtgtcatctcagcatgtgggcatcttggggcattggagataggtaattgggctgtcaactttctcacaaaacatcataccaatctaagtatatcagtatacaattctttgatattcttgtactctaaatgtggaagcatggatgatgcaaagagaatattcaacgaaatgagaaaacgagacgtggtttcctacaatacattgatttcagggtttgcggctcatggtcagggaatggaagctgtcaagctaatggtgaagttgaaagaaaaatttattgaaccaaaccgtgaaacatatataggtcgagtgggtaaagtggatgaggcaaaaaaaatagttgatggcatgcagaaagagccacatgctggagtttatggatctcttttaaatgctagccggattcacaaaaggattgatcttggggagtttgctgcaagcaagctctttgagcttgaaccacataattcaggaaactacattttgctttcgaacatatatgcctctgcaggcagctgggacgatgtggtgagagttagagaagcaatgagaaatgcaggtgtgaaaaaggcaactggttggagttgggtggaatacaatggtaagatgcacaagttcattgcgggagacagatcacacgaactgtcagatgaaatttataggcgattggctgaattagggaggaagctgaggaatgctggctacattgctgataaggcctgtgtgctaagagatgttgatgaggaagagaaagaagagatggtgggtactcatagtgaaaaattggcggtatgcttcgctcttcttgttacagaagcaaagtcagtgattagagtggtgaagaatctgagggtgtgcagggattgccatacagctattaagatgatatctaagttggaaggaaggaaaattattttgagggataataacaggtttcaccatttcagtgatgggcaatgttcttgcggagagtattggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

851

Amino Acids

94.9

Weight (kDa)

8.6

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 350 - 398 1.4e-11 PPR repeat family
PPR PF01535 353 - 382 9e-07 PPR repeat
PPR PF01535 456 - 484 9.4e-08 PPR repeat
PPR_2 PF13041 483 - 532 3.1e-10 PPR repeat family
PPR PF01535 486 - 512 5.1e-07 PPR repeat
PPR_2 PF13041 556 - 587 4.9e-06 PPR repeat family
PPR PF01535 558 - 586 5.2e-07 PPR repeat
PPR_2 PF13041 585 - 625 6.8e-09 PPR repeat family
E_motif PF20431 661 - 723 1.9e-22 E motif
DYW_deaminase PF14432 759 - 851 9.3e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 137, 2123
AasI GACNNNNNNGTC 1 cut(s) 336
Acc36I ACCTGC 2 cut(s) 137, 2123
Acc65I GGTACC 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 683
AccB7I CCANNNNNTGG 1 cut(s) 1943
AccBSI CCGCTC 1 cut(s) 18
AccI GTMKAC 1 cut(s) 1674
AccII CGCG 2 cut(s) 199, 201
AccIII TCCGGA 1 cut(s) 1042
AclWI GGATC 3 cut(s) 368, 1105, 1963
AcsI RAATTY 4 cut(s) 457, 1405, 1847, 2229
AcuI CTGAAG 1 cut(s) 1398
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 5 cut(s) 685, 695, 992, 1697, 2344
AfiI CCNNNNNNNGG 1 cut(s) 1943
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 7 cut(s) 455, 923, 1525, 1738, 1840, 1856, 2033
AjiI CACGTC 2 cut(s) 841, 1759
AjnI CCWGG 1 cut(s) 346
Alw21I GWGCWC 3 cut(s) 523, 1361, 1428
Alw26I GTCTC 6 cut(s) 545, 831, 1103, 1462, 1749, 2196
Alw44I GTGCAC 1 cut(s) 519
AlwI GGATC 3 cut(s) 368, 1105, 1963
Ama87I CYCGRG 2 cut(s) 386, 834
Aor13HI TCCGGA 1 cut(s) 1042
AoxI GGCC 4 cut(s) 45, 217, 818, 2292
ApaLI GTGCAC 1 cut(s) 519
ApoI RAATTY 4 cut(s) 457, 1405, 1847, 2229
Asp718I GGTACC 1 cut(s) 683
AspLEI GCGC 2 cut(s) 199, 201
AspS9I GGNCC 2 cut(s) 45, 818
AsuC2I CCSGG 1 cut(s) 988
AsuHPI GGTGA 6 cut(s) 118, 574, 1843, 2116, 2425, 2504
AsuII TTCGAA 2 cut(s) 809, 2066
AsuNHI GCTAGC 1 cut(s) 1970
AvaI CYCGRG 2 cut(s) 386, 834
BaeGI GKGCMC 1 cut(s) 523
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 2 cut(s) 1361, 1428
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 3 cut(s) 523, 1361, 1428
BbvCI CCTCAGC 1 cut(s) 2264
BccI CCATC 6 cut(s) 800, 1121, 1129, 1913, 2329, 2519
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 4 cut(s) 121, 155, 1059, 1093
BciT130I CCWGG 1 cut(s) 348
BclI TGATCA 2 cut(s) 705, 772
BcnI CCSGG 1 cut(s) 988
BcoDI GTCTC 6 cut(s) 545, 831, 1103, 1462, 1749, 2196
BfaI CTAG 4 cut(s) 996, 1323, 1419, 1971
BfmI CTRYAG 5 cut(s) 8, 161, 325, 397, 2082
BfuAI ACCTGC 2 cut(s) 137, 2123
Bme1390I CCNGG 2 cut(s) 348, 988
BmeT110I CYCGRG 2 cut(s) 386, 834
BmgBI CACGTC 2 cut(s) 841, 1759
BmgT120I GGNCC 2 cut(s) 45, 818
BmiI GGNNCC 1 cut(s) 685
BmrFI CCNGG 2 cut(s) 348, 988
BmrI ACTGGG 1 cut(s) 692
BmtI GCTAGC 1 cut(s) 1974
BmuI ACTGGG 1 cut(s) 692
BoxI GACNNNNGTC 1 cut(s) 675
BpiI GAAGAC 1 cut(s) 571
BpmI CTGGAG 3 cut(s) 1086, 1164, 1965
Bpu10I CCTNAGC 1 cut(s) 2264
Bpu14I TTCGAA 2 cut(s) 809, 2066
BpuMI CCSGG 1 cut(s) 988
BsaHI GRCGYC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 1042
Bsc4I CCNNNNNNNGG 1 cut(s) 1943
Bse118I RCCGGY 2 cut(s) 308, 820
Bse1I ACTGG 2 cut(s) 698, 2155
BseAI TCCGGA 1 cut(s) 1042
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 346
BseGI GGATG 6 cut(s) 54, 570, 1005, 1257, 1723, 1903
BseLI CCNNNNNNNGG 1 cut(s) 1943
BseMII CTCAG 8 cut(s) 33, 849, 942, 1103, 1502, 1599, 2255, 2414
BseNI ACTGG 2 cut(s) 698, 2155
BsePI GCGCGC 1 cut(s) 197
BseRI GAGGAG 4 cut(s) 105, 276, 877, 1121
BseSI GKGCMC 1 cut(s) 523
BseYI CCCAGC 1 cut(s) 2091
BsgI GTGCAG 1 cut(s) 2452
Bsh1236I CGCG 2 cut(s) 199, 201
BshFI GGCC 4 cut(s) 47, 219, 820, 2294
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 3 cut(s) 523, 1361, 1428
BsiHKCI CYCGRG 2 cut(s) 386, 834
BsiSI CCGG 9 cut(s) 48, 309, 359, 717, 821, 987, 1043, 1442, 1975
BslFI GGGAC 2 cut(s) 1378, 2108
BslI CCNNNNNNNGG 1 cut(s) 1943
BsmAI GTCTC 6 cut(s) 545, 831, 1103, 1462, 1749, 2196
BsmBI CGTCTC 3 cut(s) 545, 831, 1749
BsmFI GGGAC 2 cut(s) 1378, 2108
BsmI GAATGC 4 cut(s) 1021, 1072, 1378, 2275
BsnI GGCC 4 cut(s) 47, 219, 820, 2294
BsoBI CYCGRG 2 cut(s) 386, 834
Bsp119I TTCGAA 2 cut(s) 809, 2066
Bsp1286I GDGCHC 3 cut(s) 523, 1361, 1428
Bsp13I TCCGGA 1 cut(s) 1042
Bsp143I GATC 8 cut(s) 373, 705, 772, 1097, 1516, 1955, 1993, 2207
BspANI GGCC 4 cut(s) 47, 219, 820, 2294
BspCNI CTCAG 8 cut(s) 32, 850, 943, 1102, 1501, 1598, 2256, 2415
BspEI TCCGGA 1 cut(s) 1042
BspFNI CGCG 2 cut(s) 199, 201
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 685
BspMAI CTGCAG 5 cut(s) 12, 165, 329, 401, 2086
BspMI ACCTGC 2 cut(s) 137, 2123
BspOI GCTAGC 1 cut(s) 1974
BspPI GGATC 3 cut(s) 368, 1105, 1963
BspQI GCTCTTC 1 cut(s) 2382
BspT104I TTCGAA 2 cut(s) 809, 2066
BspT107I GGYRCC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 18
BsrFI RCCGGY 2 cut(s) 308, 820
BsrI ACTGG 2 cut(s) 698, 2155
BssAI RCCGGY 2 cut(s) 308, 820
BssECI CCNNGG 1 cut(s) 346
BssHII GCGCGC 1 cut(s) 197
BssMI GATC 8 cut(s) 373, 705, 772, 1097, 1516, 1955, 1993, 2207
BssNAI GTATAC 1 cut(s) 1675
BssNI GRCGYC 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 1675
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 5 cut(s) 237, 936, 1500, 1865, 2220
Bst6I CTCTTC 5 cut(s) 950, 1526, 2316, 2325, 2382
BstACI GRCGYC 1 cut(s) 351
BstAPI GCANNNNNTGC 1 cut(s) 2439
BstBI TTCGAA 2 cut(s) 809, 2066
BstEII GGTNACC 1 cut(s) 982
BstF5I GGATG 6 cut(s) 54, 570, 1005, 1257, 1723, 1903
BstFNI CGCG 2 cut(s) 199, 201
BstHHI GCGC 2 cut(s) 199, 201
BstKTI GATC 8 cut(s) 376, 708, 775, 1100, 1519, 1958, 1996, 2210
BstMAI GTCTC 6 cut(s) 545, 831, 1103, 1462, 1749, 2196
BstMBI GATC 8 cut(s) 373, 705, 772, 1097, 1516, 1955, 1993, 2207
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 4 cut(s) 833, 1593, 1927, 1943
BstPAI GACNNNNGTC 1 cut(s) 675
BstPI GGTNACC 1 cut(s) 982
BstSCI CCNGG 2 cut(s) 346, 986
BstSFI CTRYAG 5 cut(s) 8, 161, 325, 397, 2082
BstSLI GKGCMC 1 cut(s) 523
BstUI CGCG 2 cut(s) 199, 201
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 2 cut(s) 1097, 1955
BstYI RGATCY 2 cut(s) 1097, 1955
BstZ17I GTATAC 1 cut(s) 1675
BsuRI GGCC 4 cut(s) 47, 219, 820, 2294
BtgZI GCGATG 1 cut(s) 1295
BtrI CACGTC 2 cut(s) 841, 1759
BtsCI GGATG 6 cut(s) 54, 570, 1005, 1257, 1723, 1903
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 5 cut(s) 318, 727, 1582, 2406, 2527
BveI ACCTGC 2 cut(s) 137, 2123
CciI TCATGA 1 cut(s) 795
CfoI GCGC 2 cut(s) 199, 201
Cfr10I RCCGGY 2 cut(s) 308, 820
Cfr13I GGNCC 2 cut(s) 45, 818
CseI GACGC 3 cut(s) 44, 340, 391
Csp6I GTAC 5 cut(s) 684, 694, 991, 1696, 2343
CviQI GTAC 5 cut(s) 684, 694, 991, 1696, 2343
DpnI GATC 8 cut(s) 375, 707, 774, 1099, 1518, 1957, 1995, 2209
DpnII GATC 8 cut(s) 373, 705, 772, 1097, 1516, 1955, 1993, 2207
DraI TTTAAA 1 cut(s) 1965
DrdI GACNNNNNNGTC 1 cut(s) 336
DseDI GACNNNNNNGTC 1 cut(s) 336
Eam1104I CTCTTC 5 cut(s) 950, 1526, 2316, 2325, 2382
EarI CTCTTC 5 cut(s) 950, 1526, 2316, 2325, 2382
Ecl136II GAGCTC 2 cut(s) 1359, 1426
Eco147I AGGCCT 1 cut(s) 2294
Eco24I GRGCYC 2 cut(s) 1361, 1428
Eco32I GATATC 2 cut(s) 1383, 2463
Eco53kI GAGCTC 2 cut(s) 1359, 1426
Eco57I CTGAAG 1 cut(s) 1398
Eco88I CYCGRG 2 cut(s) 386, 834
Eco91I GGTNACC 1 cut(s) 982
EcoICRI GAGCTC 2 cut(s) 1359, 1426
EcoO65I GGTNACC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 346
EcoRV GATATC 2 cut(s) 1383, 2463
EcoT22I ATGCAT 1 cut(s) 1257
EcoT38I GRGCYC 2 cut(s) 1361, 1428
Esp3I CGTCTC 3 cut(s) 545, 831, 1749
FaqI GGGAC 2 cut(s) 1378, 2108
FauI CCCGC 3 cut(s) 23, 376, 2191
FauNDI CATATG 1 cut(s) 1390
FbaI TGATCA 2 cut(s) 705, 772
FblI GTMKAC 1 cut(s) 1674
FokI GGATG 6 cut(s) 41, 557, 1012, 1264, 1730, 1910
FriOI GRGCYC 2 cut(s) 1361, 1428
FspBI CTAG 4 cut(s) 996, 1323, 1419, 1971
GlaI GCGC 2 cut(s) 198, 200
GsaI CCCAGC 1 cut(s) 2095
GsuI CTGGAG 3 cut(s) 1086, 1164, 1965
HaeIII GGCC 4 cut(s) 47, 219, 820, 2294
HapII CCGG 9 cut(s) 48, 309, 359, 717, 821, 987, 1043, 1442, 1975
HgaI GACGC 3 cut(s) 44, 340, 391
HhaI GCGC 2 cut(s) 199, 201
Hin1I GRCGYC 1 cut(s) 351
Hin6I GCGC 2 cut(s) 197, 199
HinP1I GCGC 2 cut(s) 197, 199
HincII GTYRAC 1 cut(s) 1633
HindII GTYRAC 1 cut(s) 1633
HinfI GANTC 7 cut(s) 149, 551, 865, 1139, 1220, 1978, 2419
HpaII CCGG 9 cut(s) 48, 309, 359, 717, 821, 987, 1043, 1442, 1975
HphI GGTGA 6 cut(s) 118, 574, 1843, 2116, 2425, 2504
Hpy166II GTNNAC 6 cut(s) 521, 694, 932, 1503, 1633, 1675
Hpy188III TCNNGA 6 cut(s) 796, 1043, 1103, 1143, 1315, 2046
Hpy8I GTNNAC 6 cut(s) 521, 694, 932, 1503, 1633, 1675
Hpy99I CGWCG 6 cut(s) 38, 143, 146, 193, 196, 407
HpyAV CCTTC 7 cut(s) 206, 216, 365, 997, 1017, 2468, 2472
HpyCH4III ACNGT 5 cut(s) 237, 936, 1500, 1865, 2220
HpyCH4IV ACGT 3 cut(s) 672, 840, 1758
HpySE526I ACGT 3 cut(s) 672, 840, 1758
Hsp92I GRCGYC 1 cut(s) 351
HspAI GCGC 2 cut(s) 197, 199
Kpn2I TCCGGA 1 cut(s) 1042
KpnI GGTACC 1 cut(s) 687
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
Ksp22I TGATCA 2 cut(s) 705, 772
Kzo9I GATC 8 cut(s) 373, 705, 772, 1097, 1516, 1955, 1993, 2207
LguI GCTCTTC 1 cut(s) 2382
LmnI GCTCC 2 cut(s) 441, 1308
MaeI CTAG 4 cut(s) 996, 1323, 1419, 1971
MaeII ACGT 3 cut(s) 672, 840, 1758
MaeIII GTNAC 5 cut(s) 378, 964, 982, 1564, 2383
MalI GATC 8 cut(s) 375, 707, 774, 1099, 1518, 1957, 1995, 2209
MbiI CCGCTC 1 cut(s) 18
MboI GATC 8 cut(s) 373, 705, 772, 1097, 1516, 1955, 1993, 2207
MboII GAAGA 8 cut(s) 538, 571, 967, 1513, 2333, 2342, 2369, 2428
MfeI CAATTG 2 cut(s) 1173, 1512
MflI RGATCY 2 cut(s) 1097, 1955
MhlI GDGCHC 3 cut(s) 523, 1361, 1428
MlyI GAGTC 3 cut(s) 143, 545, 874
MmeI TCCRAC 4 cut(s) 67, 238, 2135, 2451
Mph1103I ATGCAT 1 cut(s) 1257
MroI TCCGGA 1 cut(s) 1042
MroNI GCCGGC 1 cut(s) 308
MseI TTAA 4 cut(s) 428, 1259, 1964, 2454
MslI CAYNNNNRTG 4 cut(s) 587, 744, 800, 2520
MspA1I CMGCKG 1 cut(s) 2091
MspI CCGG 9 cut(s) 48, 309, 359, 717, 821, 987, 1043, 1442, 1975
MspR9I CCNGG 2 cut(s) 348, 988
MunI CAATTG 2 cut(s) 1173, 1512
Mva1269I GAATGC 4 cut(s) 1021, 1072, 1378, 2275
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 2 cut(s) 199, 201
NaeI GCCGGC 1 cut(s) 310
NciI CCSGG 1 cut(s) 988
NdeI CATATG 1 cut(s) 1390
NdeII GATC 8 cut(s) 373, 705, 772, 1097, 1516, 1955, 1993, 2207
NgoMIV GCCGGC 1 cut(s) 308
NheI GCTAGC 1 cut(s) 1970
NlaIV GGNNCC 1 cut(s) 685
NmeAIII GCCGAG 1 cut(s) 1058
NmuCI GTSAC 2 cut(s) 378, 1564
NsiI ATGCAT 1 cut(s) 1257
NspI RCATGY 4 cut(s) 833, 1593, 1927, 1943
NspV TTCGAA 2 cut(s) 809, 2066
PaeI GCATGC 2 cut(s) 833, 1927
PagI TCATGA 1 cut(s) 795
PaqCI CACCTGC 2 cut(s) 137, 2123
PauI GCGCGC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 2294
PciSI GCTCTTC 1 cut(s) 2382
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 4 cut(s) 1021, 1072, 1378, 2275
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 4 cut(s) 1139, 1220, 1978, 2419
PflMI CCANNNNNTGG 1 cut(s) 1943
PleI GAGTC 3 cut(s) 143, 545, 873
PpsI GAGTC 3 cut(s) 143, 545, 873
PshAI GACNNNNGTC 1 cut(s) 675
Psp124BI GAGCTC 2 cut(s) 1361, 1428
Psp6I CCWGG 1 cut(s) 346
PspEI GGTNACC 1 cut(s) 982
PspFI CCCAGC 1 cut(s) 2091
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 685
PspPI GGNCC 2 cut(s) 45, 818
PstI CTGCAG 5 cut(s) 12, 165, 329, 401, 2086
PsuI RGATCY 2 cut(s) 1097, 1955
PteI GCGCGC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 2091
RsaI GTAC 5 cut(s) 685, 695, 992, 1697, 2344
RsaNI GTAC 5 cut(s) 684, 694, 991, 1696, 2343
RseI CAYNNNNRTG 4 cut(s) 587, 744, 800, 2520
SacI GAGCTC 2 cut(s) 1361, 1428
SapI GCTCTTC 1 cut(s) 2382
SaqAI TTAA 4 cut(s) 428, 1259, 1964, 2454
Sau3AI GATC 8 cut(s) 373, 705, 772, 1097, 1516, 1955, 1993, 2207
Sau96I GGNCC 2 cut(s) 45, 818
SchI GAGTC 3 cut(s) 143, 545, 874
ScrFI CCNGG 2 cut(s) 348, 988
SduI GDGCHC 3 cut(s) 523, 1361, 1428
SfcI CTRYAG 5 cut(s) 8, 161, 325, 397, 2082
SfuI TTCGAA 2 cut(s) 809, 2066
SmiMI CAYNNNNRTG 4 cut(s) 587, 744, 800, 2520
SphI GCATGC 2 cut(s) 833, 1927
SseBI AGGCCT 1 cut(s) 2294
SspI AATATT 3 cut(s) 599, 1039, 1734
SspMI CTAG 4 cut(s) 996, 1323, 1419, 1971
SstI GAGCTC 2 cut(s) 1361, 1428
StuI AGGCCT 1 cut(s) 2294
StyD4I CCNGG 2 cut(s) 346, 986
TaaI ACNGT 5 cut(s) 237, 936, 1500, 1865, 2220
TaiI ACGT 3 cut(s) 675, 843, 1761
TaqI TCGA 9 cut(s) 27, 81, 97, 549, 809, 846, 1469, 1882, 2066
TatI WGTACW 1 cut(s) 1695
TauI GCSGC 4 cut(s) 188, 204, 529, 1796
TfiI GAWTC 4 cut(s) 1139, 1220, 1978, 2419
Tru1I TTAA 4 cut(s) 428, 1259, 1964, 2454
Tru9I TTAA 4 cut(s) 428, 1259, 1964, 2454
TscAI CASTG 5 cut(s) 325, 727, 1582, 2406, 2527
TseFI GTSAC 2 cut(s) 378, 1564
Tsp45I GTSAC 2 cut(s) 378, 1564
TspDTI ATGAA 7 cut(s) 864, 1016, 1173, 1353, 1575, 2182, 2241
TspGWI ACGGA 2 cut(s) 366, 506
TspRI CASTG 5 cut(s) 325, 727, 1582, 2406, 2527
Van91I CCANNNNNTGG 1 cut(s) 1943
VneI GTGCAC 1 cut(s) 519
XapI RAATTY 4 cut(s) 457, 1405, 1847, 2229
XceI RCATGY 4 cut(s) 833, 1593, 1927, 1943
XcmI CCANNNNNNNNNTGG 2 cut(s) 66, 2522
XmiI GTMKAC 1 cut(s) 1674
XspI CTAG 4 cut(s) 996, 1323, 1419, 1971
Zsp2I ATGCAT 1 cut(s) 1257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.