Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007194.1

Orthogroup ID

OG0001913

Physical Location & Seq

Genomic Coordinates Forward (+)

18034 .. 19432

Gene Structure 1399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgcacaagaggcgcgccactggtggcaagaagaaagcttggaggaagaagcgaaagtatgagcttggtcgtcagcaggcaaataccaagatttcaagcaacaaaactgtaagaagaattcgtgttagaggtgccaatgtgaagtggagggccctgagattggatactgggaacttttcttggggtagtgaggctgttactcgcaagactcgtattcttgatgtcgtttacaatgcctcaaacaacgaacttgttaggacacagactcttgtgaagagtgcaattgttcaggtggatgctgctccttttaggcaatggtatctacagcactacaatgttgatatcgggaggaagaaaaagacagctgcaaaaaaggatgccaaggatgctgctaccgaggaggcagatggcaccacagaaaaaaccaaaaagagcagcaatctcctgaggaagcttgagaagtgccagaaagatcatactcttgattcccatatcgaagagcagtttagtggtggtaggttgttggcttgcatttcttcccgcccaggccaatgtggaagatctgatgggtacattttggaggggaaagaattagagttttacatgaagaaactccagaggaagaagggaaaggcagctggtgctgctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000462 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043253 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8e

Protein Analysis

217

Amino Acids

24.61

Weight (kDa)

10.34

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8e	PF01201	2 - 193	1.9e-51	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001913)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20290 AT5G59240
fragaria_vesca	FvH4_2g18130 FvH4_2g18130 FvH4_3g23820 FvH4_3g23820 FvH4_3g23850
malus_domestica	MD03G1190000.v1.1 MD04G1023100.v1.1 MD11G1206500.v1.1 MD14G1123900.v1.1
prunus_persica	Prupe.1G172800_v2.0.a1 Prupe.1G172800_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1 Prupe.4G230200_v2.0.a1
pyrus_communis	pycom03g14290 pycom04g01980 pycom11g17960 pycom13g29240
rosa_chinensis	RchiOBHm_Chr4g0412181 RchiOBHm_Chr5g0042001 RchiOBHm_Chr6g0283531
rosa_laevigata	RLG00000008310 RLG00000012819 RLG00000034108
rosa_multiflora	Rmu_sc0007194.1_g000006 Rmu_sc0023962.1_g000003 Rmu_sc0039609.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038580 Rroxscaffold_5G00356430 Rroxscaffold_7G00185460 Rroxscaffold_7G00194450
rosa_rugosa	Rorug04G0105500 Rorug05G0197800 Rorug06G0155200
rosa_samantha	Rh4BG171200 Rh4CG182700 Rh4DG166300 Rh5BG288200 Rh6DG263300
rosa_wichuraiana	Rw0G001400 Rw4G008760 Rw4G014350 Rw6G023150 Rw7G012210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	131, 410
AccII	CGCG	1 cut(s)	15
AciI	CCGC	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	117
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	5 cut(s)	38, 64, 365, 454, 638
AluI	AGCT	5 cut(s)	38, 64, 365, 454, 638
AoxI	GGCC	2 cut(s)	150, 547
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	7 cut(s)	299, 365, 389, 435, 635, 644, 647
ApoI	RAATTY	1 cut(s)	117
AscI	GGCGCGCC	1 cut(s)	13
AspLEI	GCGC	2 cut(s)	15, 17
AspS9I	GGNCC	2 cut(s)	150, 151
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	2 cut(s)	131, 410
BanII	GRGCYC	1 cut(s)	154
BbvI	GCAGC	7 cut(s)	286, 352, 376, 447, 631, 634, 647
BccI	CCATC	2 cut(s)	401, 560
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	157
BfmI	CTRYAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	157
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
BlsI	GCNGC	7 cut(s)	301, 367, 391, 437, 637, 646, 649
Bme1390I	CCNGG	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	150, 151
BmiI	GGNNCC	3 cut(s)	133, 152, 412
BmrFI	CCNGG	1 cut(s)	546
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	3 cut(s)	286, 367, 376
BmuI	ACTGGG	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	476
BsaJI	CCNNGG	3 cut(s)	381, 396, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	25, 172
Bse21I	CCTNAGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	320
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	3 cut(s)	381, 396, 544
BseGI	GGATG	3 cut(s)	301, 382, 391
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	146, 437
BseNI	ACTGG	2 cut(s)	25, 172
BsePI	GCGCGC	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	7 cut(s)	286, 352, 376, 447, 631, 634, 647
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	152, 549
BshNI	GGYRCC	2 cut(s)	131, 410
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	2 cut(s)	152, 549
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	472, 560
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	2 cut(s)	152, 549
BspCNI	CTCAG	2 cut(s)	147, 438
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	3 cut(s)	133, 152, 412
BspQI	GCTCTTC	1 cut(s)	492
BspT107I	GGYRCC	2 cut(s)	131, 410
BsrDI	GCAATG	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	25, 172
BssECI	CCNNGG	3 cut(s)	381, 396, 544
BssHII	GCGCGC	1 cut(s)	13
BssMI	GATC	2 cut(s)	472, 560
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	269, 492
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	15, 78, 529
BstDEI	CTNAG	2 cut(s)	155, 446
BstF5I	GGATG	3 cut(s)	301, 382, 391
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	15, 17
BstKTI	GATC	2 cut(s)	475, 563
BstMBI	GATC	2 cut(s)	472, 560
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 386, 641, 644
BstNI	CCWGG	1 cut(s)	546
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	7 cut(s)	286, 352, 376, 447, 631, 634, 647
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
Bsu36I	CCTNAGG	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	152, 549
BtsCI	GGATG	3 cut(s)	301, 382, 391
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	15, 78, 529
CfoI	GCGC	2 cut(s)	15, 17
Cfr13I	GGNCC	2 cut(s)	150, 151
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	1 cut(s)	604
CviJI	RGCY	9 cut(s)	38, 64, 152, 194, 365, 454, 527, 549, 638
CviKI_1	RGCY	9 cut(s)	38, 64, 152, 194, 365, 454, 527, 549, 638
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	155, 446
DpnI	GATC	2 cut(s)	474, 562
DpnII	GATC	2 cut(s)	472, 560
Eam1104I	CTCTTC	2 cut(s)	269, 492
EarI	CTCTTC	2 cut(s)	269, 492
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	343
Eco81I	CCTNAGG	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	150, 151
EcoRI	GAATTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	607
FaiI	YATR	5 cut(s)	60, 477, 492, 605, 652
FatI	CATG	1 cut(s)	603
FauI	CCCGC	1 cut(s)	548
Fnu4HI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
FokI	GGATG	3 cut(s)	308, 389, 398
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
GlaI	GCGC	2 cut(s)	14, 16
GluI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	2 cut(s)	152, 549
HhaI	GCGC	2 cut(s)	15, 17
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	2 cut(s)	13, 15
HinP1I	GCGC	2 cut(s)	13, 15
HindIII	AAGCTT	2 cut(s)	36, 452
HinfI	GANTC	3 cut(s)	208, 265, 485
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	5 cut(s)	218, 346, 445, 482, 616
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	5 cut(s)	4, 281, 368, 531, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 386, 641, 644
HpyF3I	CTNAG	2 cut(s)	155, 446
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	2 cut(s)	13, 15
Kzo9I	GATC	2 cut(s)	472, 560
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	7 cut(s)	286, 352, 376, 447, 631, 634, 647
LweI	GCATC	3 cut(s)	286, 367, 376
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	474, 562
MboI	GATC	2 cut(s)	472, 560
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	117, 282, 590
MlyI	GAGTC	2 cut(s)	202, 259
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	2 cut(s)	365, 638
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	10, 386, 641, 644
NdeII	GATC	2 cut(s)	472, 560
NlaIII	CATG	1 cut(s)	607
NlaIV	GGNNCC	3 cut(s)	133, 152, 412
PalAI	GGCGCGCC	1 cut(s)	13
PauI	GCGCGC	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	7 cut(s)	301, 367, 391, 437, 637, 646, 649
PleI	GAGTC	2 cut(s)	202, 259
PpsI	GAGTC	2 cut(s)	202, 259
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	3 cut(s)	133, 152, 412
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	2 cut(s)	150, 151
PsuI	RGATCY	1 cut(s)	560
PteI	GCGCGC	1 cut(s)	13
PvuII	CAGCTG	2 cut(s)	365, 638
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
RseI	CAYNNNNRTG	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	492
SatI	GCNGC	7 cut(s)	300, 366, 390, 436, 636, 645, 648
Sau3AI	GATC	2 cut(s)	472, 560
Sau96I	GGNCC	2 cut(s)	150, 151
SchI	GAGTC	2 cut(s)	202, 259
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	8 cut(s)	40, 66, 133, 294, 367, 456, 521, 640
SfaNI	GCATC	3 cut(s)	286, 367, 376
SfcI	CTRYAG	1 cut(s)	323
SgsI	GGCGCGCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	117, 282, 590
SsiI	CCGC	1 cut(s)	541
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	117, 282, 590
TfiI	GAWTC	1 cut(s)	485
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	7 cut(s)	299, 365, 389, 435, 635, 644, 647
TspDTI	ATGAA	1 cut(s)	620
TspRI	CASTG	1 cut(s)	25
XapI	RAATTY	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.