Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007265.1

Orthogroup ID

OG0002332

Physical Location & Seq

Genomic Coordinates Forward (+)

119 .. 1033

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atggtaatgagggcatcaccacaacaactccaggcattgagtcagcacgcttcttcacccaggagcaaaggccgtcagtctggcaagggtccattcaatcttcgaaaccaaaagcccatccaggccaacgagttcggcaaattattcgaagctcgccctgagaagttcgatcaactccaggacatggatgtctcagtcacttgcgttgaagtcaacaatgaagctatgatgctgccacactacaattctaaagcaatattcgtggtgctggttgtggaaggaagcggacgggtcgagatggcatgcccacacatggcaagccagagccaaatgggtgaggaagaagtagaacaacaaggagaacagatgaaggtcacagctgatgtatcagagggtgatgttttcgttatcccagcaggtcatcccattgccatagttgcccaaaaccaacaattgaaaatgttgggatttggaatcaatgcccaaaacaacaagaggaacttcattgcagggagagaggctaacccgattagggagatggagagagaggctaagcaactgaccttcgggcaagagatggagcagatcatcaacagacagagggaatcttatttcgccccgacagggcagagccagcagcagagaggaggcacagacgagcccttatcttcaattttggcatttgcaggcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006952 GO:0008150 GO:0009505 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0030312 GO:0031410 GO:0031982 GO:0033095 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097708 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1 Vicilin_N

Protein Analysis

231

Amino Acids

25.67

Weight (kDa)

5.67

Isoelectric Point (pI)

55.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	32 - 171	9.1e-25	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22640
fragaria_vesca	FvH4_2g23190 FvH4_4g15931 FvH4_4g15931
malus_domestica	MD03G1261200.v1.1 MD11G1140200.v1.1 MD11G1281600.v1.1 MD13G1196800.v1.1 MD16G1197100.v1.1 MD16G1197200.v1.1
prunus_persica	Prupe.1G017700_v2.0.a1 Prupe.1G018000_v2.0.a1 Prupe.8G237500_v2.0.a1
pyrus_communis	pycom09g17330 pycom11g24970 pycom13g16920 pycom13g16930 pycom16g16590 pycom16g16620
rosa_chinensis	RchiOBHm_Chr4g0415511 RchiOBHm_Chr6g0290441
rosa_laevigata	RLG00000008067 RLG00000012215
rosa_multiflora	Rmu_sc0002890.1_g000006 Rmu_sc0007265.1_g000001 Rmu_sc0007625.1_g000002 Rmu_sc0020894.1_g000005 Rmu_sc0020894.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359290 Rroxscaffold_7G00177060
rosa_rugosa	Rorug04G0134600 Rorug06G0212700
rosa_samantha	Rh4AG195500 Rh4BG194300 Rh4CG206400 Rh4DG193300 Rh6AG322900 Rh6BG330300 Rh6CG336400 Rh6DG323300
rosa_wichuraiana	Rw4G016650 Rw6G027990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	407
AccB7I	CCANNNNNTGG	1 cut(s)	184
AciI	CCGC	1 cut(s)	285
AfiI	CCNNNNNNNGG	4 cut(s)	184, 313, 532, 624
AgsI	TTSAA	4 cut(s)	97, 209, 457, 672
AjnI	CCWGG	4 cut(s)	30, 59, 120, 177
AluBI	AGCT	3 cut(s)	152, 224, 380
AluI	AGCT	3 cut(s)	152, 224, 380
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	2 cut(s)	70, 123
ApeKI	GCWGC	2 cut(s)	232, 637
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	4 cut(s)	9, 48, 347, 407
AsuII	TTCGAA	2 cut(s)	103, 147
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	219, 649
BccI	CCATC	4 cut(s)	125, 292, 532, 571
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	4 cut(s)	32, 61, 122, 179
BcoDI	GTCTC	1 cut(s)	196
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	233, 638
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	2 cut(s)	234, 639
Bme1390I	CCNGG	4 cut(s)	32, 61, 122, 179
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	4 cut(s)	32, 61, 122, 179
BmsI	GCATC	2 cut(s)	23, 219
BpmI	CTGGAG	2 cut(s)	14, 161
Bpu1102I	GCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	2 cut(s)	103, 147
BsaJI	CCNNGG	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 313, 532, 624
Bse3DI	GCAATG	2 cut(s)	426, 504
BseBI	CCWGG	4 cut(s)	32, 61, 122, 179
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	3 cut(s)	117, 193, 421
BseLI	CCNNNNNNNGG	4 cut(s)	184, 313, 532, 624
BseMI	GCAATG	2 cut(s)	426, 504
BseMII	CTCAG	2 cut(s)	150, 207
BseRI	GAGGAG	1 cut(s)	660
BseXI	GCAGC	2 cut(s)	219, 649
BseYI	CCCAGC	1 cut(s)	412
BshFI	GGCC	2 cut(s)	72, 125
BslI	CCNNNNNNNGG	4 cut(s)	184, 313, 532, 624
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	72, 125
Bsp119I	TTCGAA	2 cut(s)	103, 147
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	2 cut(s)	169, 585
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	2 cut(s)	72, 125
BspCNI	CTCAG	2 cut(s)	151, 206
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	407
BspT104I	TTCGAA	2 cut(s)	103, 147
BsrDI	GCAATG	2 cut(s)	426, 504
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	169, 585
Bst2UI	CCWGG	4 cut(s)	32, 61, 122, 179
BstBI	TTCGAA	2 cut(s)	103, 147
BstC8I	GCNNGC	6 cut(s)	48, 154, 304, 319, 635, 688
BstDEI	CTNAG	3 cut(s)	159, 193, 552
BstF5I	GGATG	3 cut(s)	117, 193, 421
BstKTI	GATC	2 cut(s)	172, 588
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	2 cut(s)	169, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 634
BstNI	CCWGG	4 cut(s)	32, 61, 122, 179
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	4 cut(s)	30, 59, 120, 177
BstV1I	GCAGC	2 cut(s)	219, 649
BsuRI	GGCC	2 cut(s)	72, 125
BtsCI	GGATG	3 cut(s)	117, 193, 421
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	6 cut(s)	48, 154, 304, 319, 635, 688
Cfr13I	GGNCC	1 cut(s)	89
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	3 cut(s)	184, 303, 313
DdeI	CTNAG	3 cut(s)	159, 193, 552
DpnI	GATC	2 cut(s)	171, 587
DpnII	GATC	2 cut(s)	169, 585
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	89
EcoRII	CCWGG	4 cut(s)	30, 59, 120, 177
EcoT38I	GRGCYC	1 cut(s)	663
FaeI	CATG	3 cut(s)	187, 306, 316
FaiI	YATR	5 cut(s)	185, 227, 304, 314, 434
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	3 cut(s)	183, 302, 312
Fnu4HI	GCNGC	2 cut(s)	233, 638
FokI	GGATG	3 cut(s)	104, 200, 408
FriOI	GRGCYC	1 cut(s)	663
Fsp4HI	GCNGC	2 cut(s)	233, 638
GluI	GCNGC	2 cut(s)	233, 638
GsaI	CCCAGC	1 cut(s)	416
GsuI	CTGGAG	2 cut(s)	14, 161
HaeIII	GGCC	2 cut(s)	72, 125
Hin1II	CATG	3 cut(s)	187, 306, 316
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	40, 474, 605
HphI	GGTGA	4 cut(s)	9, 48, 347, 407
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	272, 364, 574
HpyCH4V	TGCA	2 cut(s)	509, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 634
HpyF3I	CTNAG	3 cut(s)	159, 193, 552
Hsp92II	CATG	3 cut(s)	187, 306, 316
Kzo9I	GATC	2 cut(s)	169, 585
LmnI	GCTCC	2 cut(s)	63, 580
Lsp1109I	GCAGC	2 cut(s)	219, 649
LweI	GCATC	2 cut(s)	23, 219
MaeIII	GTNAC	2 cut(s)	196, 373
MalI	GATC	2 cut(s)	171, 587
MboI	GATC	2 cut(s)	169, 585
MboII	GAAGA	4 cut(s)	45, 92, 353, 660
MfeI	CAATTG	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	4 cut(s)	140, 244, 452, 672
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	9 cut(s)	3, 331, 385, 489, 511, 541, 594, 638, 641
MseI	TTAA	1 cut(s)	694
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	4 cut(s)	32, 61, 122, 179
MunI	CAATTG	1 cut(s)	452
MvaI	CCWGG	4 cut(s)	32, 61, 122, 179
MwoI	GCNNNNNNNGC	2 cut(s)	437, 634
NdeII	GATC	2 cut(s)	169, 585
NlaIII	CATG	3 cut(s)	187, 306, 316
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	196, 373
NspI	RCATGY	1 cut(s)	306
NspV	TTCGAA	2 cut(s)	103, 147
PaeI	GCATGC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	474, 605
PflMI	CCANNNNNTGG	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	234, 639
PleI	GAGTC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	48
Psp6I	CCWGG	4 cut(s)	30, 59, 120, 177
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	4 cut(s)	30, 59, 120, 177
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	694
SatI	GCNGC	2 cut(s)	233, 638
Sau3AI	GATC	2 cut(s)	169, 585
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	4 cut(s)	32, 61, 122, 179
SduI	GDGCHC	1 cut(s)	663
SetI	ASST	6 cut(s)	154, 226, 375, 382, 421, 566
SfaNI	GCATC	2 cut(s)	23, 219
SfuI	TTCGAA	2 cut(s)	103, 147
SinI	GGWCC	1 cut(s)	89
SphI	GCATGC	1 cut(s)	306
Sse9I	AATT	4 cut(s)	140, 244, 452, 672
SsiI	CCGC	1 cut(s)	285
SspI	AATATT	1 cut(s)	258
StyD4I	CCNGG	4 cut(s)	30, 59, 120, 177
TaqI	TCGA	4 cut(s)	103, 147, 168, 294
TasI	AATT	4 cut(s)	140, 244, 452, 672
TfiI	GAWTC	2 cut(s)	474, 605
Tru1I	TTAA	1 cut(s)	694
Tru9I	TTAA	1 cut(s)	694
TseFI	GTSAC	2 cut(s)	196, 373
TseI	GCWGC	2 cut(s)	232, 637
Tsp45I	GTSAC	2 cut(s)	196, 373
TspDTI	ATGAA	3 cut(s)	234, 383, 493
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.