Rmu_sc0007283.1_g000014

repressing transcription factor binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007283.1
OG0003679
Physical Location & Seq
Forward (+)
60325 .. 60939
615 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
atgcatgagtgttttgagccgactcaggacccctacacgagaagtgatgtggttgatgatgtgatttttaataggcagaagaagtttcgagggttttatactgcggttttggagaggaatgaggaggtgattagcgcagctacagtgagggtttacagtgagctgggggaagtgccgctagtggcgactaagtttaagcaccggagacttgggatgtgtcgaattttgatgagtgagcttgagaaacagcttgtgaaattgggaattgagaagctggttttgccttctgctaaagatgcactggaggcatggactggtacctcacttgggttttcaaagatgactgctgacgaaacattaccattgttgaagtatagattctggaatttccaagacactaccatgtgtcacaaggtattgaagaagcagacgactagtactgaatctgatgggtctgctggtgccatttctacagtaacgcaaataggggacattgttgcaagtgaagaggcttgcattatggatattgattatgattatgatttcatgttggaggatgactctaaattcttgtcatggtacaaatgtggatctaaaaagattgtggctctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0008270 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0015630 GO:0016043 GO:0016462 GO:0016569 GO:0016570 GO:0016575 GO:0016581 GO:0016787 GO:0016810 GO:0016811 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019213 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0032991 GO:0033558 GO:0035601 GO:0036211 GO:0042623 GO:0042826 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070491 GO:0070603 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:0098732 GO:0140096 GO:0140097 GO:1901363 GO:1901564 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 Agenet Jas PHD

Protein Analysis

204

Amino Acids

23.2

Weight (kDa)

5.34

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IDM1_C PF23209 5 - 138 6e-42 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 2 cut(s) 317, 461
AciI CCGC 2 cut(s) 104, 176
AclWI GGATC 1 cut(s) 598
AcsI RAATTY 3 cut(s) 222, 385, 566
AfaI GTAC 3 cut(s) 319, 439, 581
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 3 cut(s) 336, 370, 421
AhlI ACTAGT 1 cut(s) 434
AluBI AGCT 5 cut(s) 140, 163, 238, 250, 274
AluI AGCT 5 cut(s) 140, 163, 238, 250, 274
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 598
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 3 cut(s) 222, 385, 566
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 1 cut(s) 28
BaeI ACNNNNGTAYC 2 cut(s) 571, 604
BanI GGYRCC 2 cut(s) 317, 461
BauI CACGAG 1 cut(s) 37
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 199
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 2 cut(s) 179, 435
BfmI CTRYAG 2 cut(s) 141, 471
BisI GCNGC 2 cut(s) 138, 176
BlsI GCNGC 2 cut(s) 139, 177
BmcAI AGTACT 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 3 cut(s) 30, 319, 463
BmsI GCATC 1 cut(s) 286
BplI GAGNNNNNCTC 2 cut(s) 545, 577
BpmI CTGGAG 1 cut(s) 323
BpuEI CTTGAG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 306, 319
BseGI GGATG 2 cut(s) 219, 562
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 2 cut(s) 306, 319
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 163
BshNI GGYRCC 2 cut(s) 317, 461
BsiSI CCGG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 503
Bsp143I GATC 1 cut(s) 590
BspACI CCGC 2 cut(s) 104, 176
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 3 cut(s) 30, 319, 463
BspPI GGATC 1 cut(s) 598
BspT107I GGYRCC 2 cut(s) 317, 461
BsrI ACTGG 2 cut(s) 306, 319
BssMI GATC 1 cut(s) 590
BssSI CACGAG 1 cut(s) 37
Bst2BI CACGAG 1 cut(s) 37
Bst4CI ACNGT 3 cut(s) 145, 158, 475
Bst6I CTCTTC 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 2 cut(s) 24, 189
BstF5I GGATG 2 cut(s) 219, 562
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 593
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 590
BstMWI GCNNNNNNNGC 3 cut(s) 280, 296, 305
BstSFI CTRYAG 2 cut(s) 141, 471
BstV1I GCAGC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 590
BstYI RGATCY 1 cut(s) 590
BtsCI GGATG 2 cut(s) 219, 562
BtsIMutI CAGTG 3 cut(s) 150, 163, 299
Cac8I GCNNGC 1 cut(s) 514
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 3 cut(s) 318, 438, 580
CviAII CATG 5 cut(s) 5, 309, 403, 547, 576
CviJI RGCY 8 cut(s) 19, 140, 163, 238, 250, 274, 512, 608
CviKI_1 RGCY 8 cut(s) 19, 140, 163, 238, 250, 274, 512, 608
CviQI GTAC 3 cut(s) 318, 438, 580
DdeI CTNAG 2 cut(s) 24, 189
DpnI GATC 1 cut(s) 592
DpnII GATC 1 cut(s) 590
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 5 cut(s) 8, 312, 406, 550, 579
FaqI GGGAC 1 cut(s) 503
FatI CATG 5 cut(s) 4, 308, 402, 546, 575
Fnu4HI GCNGC 2 cut(s) 138, 176
FokI GGATG 2 cut(s) 226, 569
Fsp4HI GCNGC 2 cut(s) 138, 176
FspBI CTAG 2 cut(s) 179, 435
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 138, 176
GsaI CCCAGC 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 323
HapII CCGG 1 cut(s) 202
HhaI GCGC 1 cut(s) 137
Hin1II CATG 5 cut(s) 8, 312, 406, 550, 579
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 4 cut(s) 22, 378, 443, 560
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 2 cut(s) 26, 382
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 3 cut(s) 145, 158, 475
HpyCH4V TGCA 4 cut(s) 4, 299, 500, 516
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 296, 305
HpyF3I CTNAG 2 cut(s) 24, 189
Hsp92II CATG 5 cut(s) 8, 312, 406, 550, 579
HspAI GCGC 1 cut(s) 135
KpnI GGTACC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 590
LpnPI CCDG 8 cut(s) 11, 149, 215, 260, 287, 300, 367, 444
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 286
MaeI CTAG 2 cut(s) 179, 435
MaeIII GTNAC 2 cut(s) 407, 475
MalI GATC 1 cut(s) 592
MboI GATC 1 cut(s) 590
MboII GAAGA 3 cut(s) 91, 433, 518
MflI RGATCY 1 cut(s) 590
MluCI AATT 5 cut(s) 222, 257, 264, 385, 566
MlyI GAGTC 2 cut(s) 16, 554
MmeI TCCRAC 1 cut(s) 531
MnlI CCTC 9 cut(s) 83, 108, 115, 118, 141, 298, 331, 502, 547
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 69, 195
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 202
MwoI GCNNNNNNNGC 3 cut(s) 280, 296, 305
NdeII GATC 1 cut(s) 590
NlaIII CATG 5 cut(s) 8, 312, 406, 550, 579
NlaIV GGNNCC 3 cut(s) 30, 319, 463
NmuCI GTSAC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 378, 443
PkrI GCNGC 2 cut(s) 139, 177
PleI GAGTC 2 cut(s) 16, 554
PpsI GAGTC 2 cut(s) 16, 554
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 30, 319, 463
PspPI GGNCC 1 cut(s) 28
PspPPI RGGWCCY 1 cut(s) 28
PsuI RGATCY 1 cut(s) 590
RsaI GTAC 3 cut(s) 319, 439, 581
RsaNI GTAC 3 cut(s) 318, 438, 580
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 2 cut(s) 69, 195
SatI GCNGC 2 cut(s) 138, 176
Sau3AI GATC 1 cut(s) 590
Sau96I GGNCC 1 cut(s) 28
ScaI AGTACT 1 cut(s) 439
SchI GAGTC 2 cut(s) 16, 554
SetI ASST 8 cut(s) 129, 142, 165, 240, 252, 276, 323, 417
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 2 cut(s) 141, 471
SinI GGWCC 1 cut(s) 28
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 5 cut(s) 222, 257, 264, 385, 566
SsiI CCGC 2 cut(s) 104, 176
SspMI CTAG 2 cut(s) 179, 435
TaaI ACNGT 3 cut(s) 145, 158, 475
TaqI TCGA 2 cut(s) 88, 220
TasI AATT 5 cut(s) 222, 257, 264, 385, 566
TatI WGTACW 1 cut(s) 437
TauI GCSGC 1 cut(s) 178
TfiI GAWTC 2 cut(s) 378, 443
Tru1I TTAA 2 cut(s) 69, 195
Tru9I TTAA 2 cut(s) 69, 195
TscAI CASTG 3 cut(s) 150, 163, 306
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 1 cut(s) 535
TspRI CASTG 3 cut(s) 150, 163, 306
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 3 cut(s) 222, 385, 566
XspI CTAG 2 cut(s) 179, 435
ZrmI AGTACT 1 cut(s) 439
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.