Rmu_ssc0000218.1_g000016

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000218.1
OG0005901
Physical Location & Seq
Forward (+)
71390 .. 74040
2651 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1635 bp
atggaggtccaaatactgtccaaggagtacatcaagccctcttccccaacgcctccacacattaacacatacagattttccctcttggatcacgtaatgcctccagtttatgttcccatggtcatgttctatcctcctgtttcacctctcaatactactagaagtgaaagatcacaagcactaagacaatctctctcggaaaccctgactcgcttttacccactagctggaagaatcagagactacctttgcatccattgcaacgacgaaggagcttgttacatagaagccgatgtcaagtctcatgacctctcggagtttctgcagcatcctgacttgtcagtactccctaagcttcttccaactttcaacagtttgcttgattacactgatctaatttcaaatgccaccactggcctagaaggagaaggaggagctgatgtagtcatgatccaagtgactaactttgcctgcggcgggtttgtgattggagtgtttgtttctcatatgattgttgatggcattgccatcagcaattttcttaaagcttgggctgcagccactgcacacagtctatcaggtcagagtgttcatgaattgcctgattttgatgctgcaacattgttccctcctattcttgatgaacaaggtaagagaacacacccaagtgaagcaaccatgaggggattgtacaggcgtttcgccaagagaggaaggtgtgttacgaacagatttgtatttgaggcctcagctgtggccaaacttaaagagcaagcagcaacatcatcattacaaaatccaagtcgggtggaggcagtgtcagcattcatctggaaatgcgccacggctgcttggaaggccaagtctggtcaatctgcaccaagtttgataacccacgcagtgaatttgcgccgaagagctgagccgaatttttcccaaaattgtatggggaattttgtttgtttggcaggtgcaatagcaaatggtcatcagagagaacaggagttagagttgtcaagcttggtgagcaagatgagggaagcaacatcgaaattcaatggtgacttggtggcgaagctacaaggtcaagatgggttagccactattagtaaggttttccaagacatggccgaggctatcacactctccactaatggggatgatcaggtggagatgaactttattgggtataccagcattgcctactctggagtgtatgatgccgatttcggctggggaaagcctctgtgggtcgttccagttcatgagccctgtcacgaggccttctcggtcaatgtggttcgtttgatggatacaggagaatggggaaacaatggttttgaagcttggatttctctagctgaagaagaaatggcaatgttgcaaatcaatcaggacttgcttgcttttgcttctctcaatcctagtcctctcaggtggagccaaaacactggggccttggattgggattgggatttttgtggggagaactgggaagaaggagcgacgggcaagtttgaggtcgactccgacatgacggaggggcagaccaacgatttcctccaggatatctccgagctgaggaagcggcagaagtcggggattgtgagcgaccggaagaggaatttggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

544

Amino Acids

60.32

Weight (kDa)

5.19

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 466 8.1e-78 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 959
Acc36I ACCTGC 1 cut(s) 959
AccB7I CCANNNNNTGG 2 cut(s) 227, 1126
AccI GTMKAC 2 cut(s) 1190, 1524
AciI CCGC 3 cut(s) 474, 477, 1588
AclWI GGATC 2 cut(s) 96, 445
AcoI YGGCCR 2 cut(s) 756, 1128
AcsI RAATTY 5 cut(s) 904, 928, 952, 1052, 1624
AcuI CTGAAG 1 cut(s) 1383
AdeI CACNNNGTG 1 cut(s) 901
AfaI GTAC 3 cut(s) 29, 345, 692
AfiI CCNNNNNNNGG 6 cut(s) 227, 477, 1126, 1155, 1464, 1581
AgsI TTSAA 4 cut(s) 370, 402, 1057, 1343
AjnI CCWGG 1 cut(s) 1563
AjuI GAANNNNNNNTTGG 1 cut(s) 1610
AleI CACNNNNGTG 1 cut(s) 666
Alw26I GTCTC 2 cut(s) 234, 306
AlwI GGATC 2 cut(s) 96, 445
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 7 cut(s) 415, 744, 756, 858, 1128, 1281, 1455
ApeKI GCWGC 6 cut(s) 325, 554, 557, 614, 776, 848
ApoI RAATTY 5 cut(s) 904, 928, 952, 1052, 1624
ArsI GACNNNNNNTTYG 2 cut(s) 787, 819
AspLEI GCGC 2 cut(s) 842, 912
AspS9I GGNCC 2 cut(s) 7, 1455
AsuHPI GGTGA 3 cut(s) 135, 1036, 1073
AvaII GGWCC 1 cut(s) 7
BalI TGGCCA 1 cut(s) 758
BanII GRGCYC 1 cut(s) 1272
BarI GAAGNNNNNNTAC 2 cut(s) 706, 738
BauI CACGAG 1 cut(s) 1277
BbvCI CCTCAGC 2 cut(s) 748, 1580
BbvI GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BccI CCATC 4 cut(s) 512, 536, 1085, 1303
BceAI ACGGC 1 cut(s) 861
BciT130I CCWGG 1 cut(s) 1565
BciVI GTATCC 1 cut(s) 1306
BclI TGATCA 1 cut(s) 1162
BcoDI GTCTC 2 cut(s) 234, 306
BfaI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
BfmI CTRYAG 2 cut(s) 323, 555
BfuAI ACCTGC 1 cut(s) 959
BfuI GTATCC 1 cut(s) 1306
BisI GCNGC 8 cut(s) 326, 475, 555, 558, 615, 777, 849, 1589
BlpI GCTNAGC 1 cut(s) 921
BlsI GCNGC 8 cut(s) 327, 476, 556, 559, 616, 778, 850, 1590
BmcAI AGTACT 1 cut(s) 345
Bme1390I CCNGG 1 cut(s) 1565
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 2 cut(s) 7, 1455
BmiI GGNNCC 2 cut(s) 1442, 1456
BmrFI CCNGG 1 cut(s) 1565
BmrI ACTGGG 2 cut(s) 1461, 1501
BmsI GCATC 4 cut(s) 261, 337, 601, 1210
BmuI ACTGGG 2 cut(s) 1461, 1501
BplI GAGNNNNNCTC 4 cut(s) 1271, 1303, 1511, 1543
BpmI CTGGAG 3 cut(s) 87, 1230, 1547
Bpu10I CCTNAGC 3 cut(s) 351, 748, 1580
Bpu1102I GCTNAGC 1 cut(s) 921
BsaAI YACGTR 1 cut(s) 94
BsaJI CCNNGG 5 cut(s) 21, 117, 843, 1131, 1458
BsaWI WCCGGW 1 cut(s) 1614
BsaXI ACNNNNNCTCC 8 cut(s) 426, 456, 483, 513, 803, 833, 995, 1025
Bsc4I CCNNNNNNNGG 6 cut(s) 227, 477, 1126, 1155, 1464, 1581
Bse1I ACTGG 5 cut(s) 104, 418, 1259, 1456, 1496
Bse3DI GCAATG 4 cut(s) 256, 522, 1197, 1383
BseBI CCWGG 1 cut(s) 1565
BseDI CCNNGG 5 cut(s) 21, 117, 843, 1131, 1458
BseGI GGATG 3 cut(s) 252, 328, 1165
BseLI CCNNNNNNNGG 6 cut(s) 227, 477, 1126, 1155, 1464, 1581
BseMI GCAATG 4 cut(s) 256, 522, 1197, 1383
BseMII CTCAG 4 cut(s) 762, 912, 1447, 1571
BseNI ACTGG 5 cut(s) 104, 418, 1259, 1456, 1496
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BseYI CCCAGC 1 cut(s) 1233
BsgI GTGCAG 2 cut(s) 549, 861
Bsh1285I CGRYCG 1 cut(s) 1615
BshFI GGCC 7 cut(s) 417, 746, 758, 860, 1130, 1283, 1457
BsiEI CGRYCG 1 cut(s) 1615
BsiSI CCGG 1 cut(s) 1615
BslI CCNNNNNNNGG 6 cut(s) 227, 477, 1126, 1155, 1464, 1581
BsmAI GTCTC 2 cut(s) 234, 306
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 7 cut(s) 417, 746, 758, 860, 1130, 1283, 1457
Bsp1286I GDGCHC 1 cut(s) 1272
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 5 cut(s) 88, 170, 391, 450, 1162
Bsp1720I GCTNAGC 1 cut(s) 921
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 3 cut(s) 474, 477, 1588
BspANI GGCC 7 cut(s) 417, 746, 758, 860, 1130, 1283, 1457
BspCNI CTCAG 4 cut(s) 761, 913, 1446, 1572
BspHI TCATGA 4 cut(s) 304, 447, 592, 1264
BspLI GGNNCC 2 cut(s) 1442, 1456
BspMAI CTGCAG 2 cut(s) 327, 559
BspMI ACCTGC 1 cut(s) 959
BspPI GGATC 2 cut(s) 96, 445
BspQI GCTCTTC 1 cut(s) 910
BsrDI GCAATG 4 cut(s) 256, 522, 1197, 1383
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 5 cut(s) 104, 418, 1259, 1456, 1496
BssECI CCNNGG 5 cut(s) 21, 117, 843, 1131, 1458
BssMI GATC 5 cut(s) 88, 170, 391, 450, 1162
BssNAI GTATAC 1 cut(s) 1191
BssSI CACGAG 1 cut(s) 1277
BssT1I CCWWGG 3 cut(s) 21, 117, 1458
Bst1107I GTATAC 1 cut(s) 1191
Bst2BI CACGAG 1 cut(s) 1277
Bst2UI CCWGG 1 cut(s) 1565
Bst4CI ACNGT 3 cut(s) 18, 374, 572
Bst6I CTCTTC 3 cut(s) 46, 910, 1613
BstAPI GCANNNNNTGC 2 cut(s) 258, 563
BstAUI TGTACA 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 472, 774, 1404
BstDEI CTNAG 6 cut(s) 182, 351, 748, 921, 1433, 1580
BstDSI CCRYGG 2 cut(s) 117, 843
BstF5I GGATG 3 cut(s) 252, 328, 1165
BstHHI GCGC 2 cut(s) 842, 912
BstKTI GATC 5 cut(s) 91, 173, 394, 453, 1165
BstMAI GTCTC 2 cut(s) 234, 306
BstMBI GATC 5 cut(s) 88, 170, 391, 450, 1162
BstMCI CGRYCG 1 cut(s) 1615
BstMWI GCNNNNNNNGC 8 cut(s) 258, 554, 563, 821, 848, 857, 1026, 1585
BstNI CCWGG 1 cut(s) 1565
BstSCI CCNGG 1 cut(s) 1563
BstSFI CTRYAG 2 cut(s) 323, 555
BstV1I GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
BstXI CCANNNNNNTGG 1 cut(s) 1451
BstZ17I GTATAC 1 cut(s) 1191
BsuI GTATCC 1 cut(s) 1306
BsuRI GGCC 7 cut(s) 417, 746, 758, 860, 1130, 1283, 1457
BtgI CCRYGG 2 cut(s) 117, 843
BtsCI GGATG 3 cut(s) 252, 328, 1165
BtsI GCAGTG 3 cut(s) 561, 822, 906
BtsIMutI CAGTG 6 cut(s) 387, 411, 561, 822, 906, 1449
BveI ACCTGC 1 cut(s) 959
Cac8I GCNNGC 3 cut(s) 472, 774, 1404
CaiI CAGNNNCTG 1 cut(s) 563
CciI TCATGA 4 cut(s) 304, 447, 592, 1264
CfoI GCGC 2 cut(s) 842, 912
Cfr13I GGNCC 2 cut(s) 7, 1455
Csp6I GTAC 3 cut(s) 28, 344, 691
CspCI CAANNNNNGTGG 2 cut(s) 789, 824
CviAII CATG 9 cut(s) 118, 124, 305, 448, 593, 679, 1126, 1265, 1534
CviQI GTAC 3 cut(s) 28, 344, 691
DdeI CTNAG 6 cut(s) 182, 351, 748, 921, 1433, 1580
DpnI GATC 5 cut(s) 90, 172, 393, 452, 1164
DpnII GATC 5 cut(s) 88, 170, 391, 450, 1162
DraIII CACNNNGTG 1 cut(s) 901
EaeI YGGCCR 2 cut(s) 756, 1128
Eam1104I CTCTTC 3 cut(s) 46, 910, 1613
EarI CTCTTC 3 cut(s) 46, 910, 1613
Eco130I CCWWGG 3 cut(s) 21, 117, 1458
Eco147I AGGCCT 2 cut(s) 746, 1283
Eco24I GRGCYC 1 cut(s) 1272
Eco32I GATATC 1 cut(s) 1570
Eco47I GGWCC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 1383
EcoO109I RGGNCCY 1 cut(s) 1455
EcoRII CCWGG 1 cut(s) 1563
EcoRV GATATC 1 cut(s) 1570
EcoT14I CCWWGG 3 cut(s) 21, 117, 1458
EcoT38I GRGCYC 1 cut(s) 1272
ErhI CCWWGG 3 cut(s) 21, 117, 1458
FaeI CATG 9 cut(s) 121, 127, 308, 451, 596, 682, 1129, 1268, 1537
FatI CATG 9 cut(s) 117, 123, 304, 447, 592, 678, 1125, 1264, 1533
FauI CCCGC 1 cut(s) 470
FauNDI CATATG 1 cut(s) 507
FbaI TGATCA 1 cut(s) 1162
FblI GTMKAC 2 cut(s) 1190, 1524
Fnu4HI GCNGC 8 cut(s) 326, 475, 555, 558, 615, 777, 849, 1589
FokI GGATG 3 cut(s) 239, 315, 1172
FriOI GRGCYC 1 cut(s) 1272
Fsp4HI GCNGC 8 cut(s) 326, 475, 555, 558, 615, 777, 849, 1589
FspBI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
GlaI GCGC 2 cut(s) 841, 911
GluI GCNGC 8 cut(s) 326, 475, 555, 558, 615, 777, 849, 1589
GsaI CCCAGC 1 cut(s) 1237
GsuI CTGGAG 3 cut(s) 87, 1230, 1547
HaeIII GGCC 7 cut(s) 417, 746, 758, 860, 1130, 1283, 1457
HapII CCGG 1 cut(s) 1615
HhaI GCGC 2 cut(s) 842, 912
Hin1II CATG 9 cut(s) 121, 127, 308, 451, 596, 682, 1129, 1268, 1537
Hin6I GCGC 2 cut(s) 840, 910
HinP1I GCGC 2 cut(s) 840, 910
HincII GTYRAC 1 cut(s) 1525
HindII GTYRAC 1 cut(s) 1525
HindIII AAGCTT 4 cut(s) 353, 546, 1018, 1344
HinfI GANTC 3 cut(s) 208, 234, 1526
HpaII CCGG 1 cut(s) 1615
HphI GGTGA 3 cut(s) 135, 1036, 1073
Hpy166II GTNNAC 2 cut(s) 1191, 1525
Hpy188I TCNGA 7 cut(s) 199, 239, 316, 585, 993, 1531, 1576
Hpy8I GTNNAC 2 cut(s) 1191, 1525
Hpy99I CGWCG 2 cut(s) 269, 1510
HpyAV CCTTC 7 cut(s) 263, 416, 422, 708, 850, 1294, 1493
HpyCH4III ACNGT 3 cut(s) 18, 374, 572
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 9 cut(s) 252, 261, 325, 557, 566, 617, 878, 974, 1384
HpyF10VI GCNNNNNNNGC 8 cut(s) 258, 554, 563, 821, 848, 857, 1026, 1585
HpyF3I CTNAG 6 cut(s) 182, 351, 748, 921, 1433, 1580
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 9 cut(s) 121, 127, 308, 451, 596, 682, 1129, 1268, 1537
HspAI GCGC 2 cut(s) 840, 910
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 5 cut(s) 88, 170, 391, 450, 1162
LguI GCTCTTC 1 cut(s) 910
LmnI GCTCC 4 cut(s) 272, 434, 1440, 1502
Lsp1109I GCAGC 6 cut(s) 337, 541, 569, 601, 788, 835
LweI GCATC 4 cut(s) 261, 337, 601, 1210
MaeI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 5 cut(s) 278, 457, 721, 1061, 1274
MalI GATC 5 cut(s) 90, 172, 393, 452, 1164
MboI GATC 5 cut(s) 88, 170, 391, 450, 1162
MboII GAAGA 8 cut(s) 33, 243, 350, 927, 1376, 1379, 1508, 1630
MhlI GDGCHC 1 cut(s) 1272
MlsI TGGCCA 1 cut(s) 758
MluCI AATT 9 cut(s) 396, 535, 596, 904, 928, 940, 952, 1052, 1624
MluNI TGGCCA 1 cut(s) 758
MlyI GAGTC 2 cut(s) 202, 1520
MmeI TCCRAC 2 cut(s) 386, 1554
Mox20I TGGCCA 1 cut(s) 758
MscI TGGCCA 1 cut(s) 758
MseI TTAA 3 cut(s) 63, 543, 765
MslI CAYNNNNRTG 2 cut(s) 122, 666
Msp20I TGGCCA 1 cut(s) 758
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 1 cut(s) 1615
MspR9I CCNGG 1 cut(s) 1565
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 1 cut(s) 1565
MwoI GCNNNNNNNGC 8 cut(s) 258, 554, 563, 821, 848, 857, 1026, 1585
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 507
NdeII GATC 5 cut(s) 88, 170, 391, 450, 1162
NlaIII CATG 9 cut(s) 121, 127, 308, 451, 596, 682, 1129, 1268, 1537
NlaIV GGNNCC 2 cut(s) 1442, 1456
NmeAIII GCCGAG 1 cut(s) 1156
NmuCI GTSAC 3 cut(s) 457, 1061, 1274
OliI CACNNNNGTG 1 cut(s) 666
PagI TCATGA 4 cut(s) 304, 447, 592, 1264
PaqCI CACCTGC 1 cut(s) 959
PceI AGGCCT 2 cut(s) 746, 1283
PciSI GCTCTTC 1 cut(s) 910
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 1 cut(s) 234
PflMI CCANNNNNTGG 2 cut(s) 227, 1126
PfoI TCCNGGA 1 cut(s) 1563
PkrI GCNGC 8 cut(s) 327, 476, 556, 559, 616, 778, 850, 1590
PleI GAGTC 2 cut(s) 202, 1520
PpsI GAGTC 2 cut(s) 202, 1520
Ppu21I YACGTR 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 1563
PspFI CCCAGC 1 cut(s) 1233
PspGI CCWGG 1 cut(s) 1563
PspN4I GGNNCC 2 cut(s) 1442, 1456
PspPI GGNCC 2 cut(s) 7, 1455
PstI CTGCAG 2 cut(s) 327, 559
PstNI CAGNNNCTG 1 cut(s) 563
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 3 cut(s) 29, 345, 692
RsaNI GTAC 3 cut(s) 28, 344, 691
RseI CAYNNNNRTG 2 cut(s) 122, 666
SalI GTCGAC 1 cut(s) 1523
SapI GCTCTTC 1 cut(s) 910
SaqAI TTAA 3 cut(s) 63, 543, 765
SatI GCNGC 8 cut(s) 326, 475, 555, 558, 615, 777, 849, 1589
Sau3AI GATC 5 cut(s) 88, 170, 391, 450, 1162
Sau96I GGNCC 2 cut(s) 7, 1455
ScaI AGTACT 1 cut(s) 345
SchI GAGTC 2 cut(s) 202, 1520
ScrFI CCNGG 1 cut(s) 1565
SduI GDGCHC 1 cut(s) 1272
SfaNI GCATC 4 cut(s) 261, 337, 601, 1210
SfcI CTRYAG 2 cut(s) 323, 555
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 2 cut(s) 122, 666
Sse9I AATT 9 cut(s) 396, 535, 596, 904, 928, 940, 952, 1052, 1624
SseBI AGGCCT 2 cut(s) 746, 1283
SsiI CCGC 3 cut(s) 474, 477, 1588
SspMI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
StuI AGGCCT 2 cut(s) 746, 1283
StyD4I CCNGG 1 cut(s) 1563
StyI CCWWGG 3 cut(s) 21, 117, 1458
TaaI ACNGT 3 cut(s) 18, 374, 572
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 1049, 1524
TaqII GACCGA 1 cut(s) 1279
TasI AATT 9 cut(s) 396, 535, 596, 904, 928, 940, 952, 1052, 1624
TatI WGTACW 3 cut(s) 27, 343, 690
TauI GCSGC 2 cut(s) 477, 1591
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 3 cut(s) 63, 543, 765
Tru9I TTAA 3 cut(s) 63, 543, 765
TscAI CASTG 6 cut(s) 394, 418, 568, 822, 906, 1456
TseFI GTSAC 3 cut(s) 457, 1061, 1274
TseI GCWGC 6 cut(s) 325, 554, 557, 614, 776, 848
Tsp45I GTSAC 3 cut(s) 457, 1061, 1274
TspDTI ATGAA 6 cut(s) 581, 609, 657, 817, 1190, 1253
TspGWI ACGGA 1 cut(s) 1553
TspRI CASTG 6 cut(s) 394, 418, 568, 822, 906, 1456
Van91I CCANNNNNTGG 2 cut(s) 227, 1126
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 5 cut(s) 904, 928, 952, 1052, 1624
XmiI GTMKAC 2 cut(s) 1190, 1524
XspI CTAG 5 cut(s) 159, 224, 419, 1358, 1425
ZrmI AGTACT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.