Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000323.1

Orthogroup ID

OG0005943

Physical Location & Seq

Genomic Coordinates Reverse (-)

61929 .. 65330

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggcatcatacctgcatccctccatcgtcagatcatggatcagcaccgacacatcgaaaggactagcctcctcgttgccctttgaatcaattggccagcacttgccgccccatcacccccacaccactgtattcgaaacaacctcccataccagatcagatcagaacgatctaattgatgagaagagaagattacgagcaaggcctcgccgcagccctgcatactcgccaccggcgctggtcctcctcaccttcccagtcagcgacgactctcctcctccgccgcagtccacggctcgcccaggatctcaacctcgaccacctcctctctcccagtgctccgacctcgataagcacctctgcaatctccaaaaatcctcccaggtcctcgacatcatcaagtccgacgccgaccatgtcctctccaacgtctcctccacccgcgacctcgccgaccacgtcagctccaagatccgcaacctctccaatctccagaaatcctcccaggtcctcgacatcgtcaagtccaacgctgaccacgtcctctccaacgtctcctccacctgcgacctcgccaaccacgtcagtgccaagatccgcgacctcgccgaccacatctgcgccaaggtccgcgagcttgacctcgcccagtcgcgcatcaactccacgctcctccgtttggatgcgattgtggagcttgacctcgcccagtctcgtggttctgatttttttttgtcgagtcaccggattccggtgaccggtcgctggattccgatcatcagttaccggattcgagtcaccggtagccggagtcctgtcatcggtagccggagaccgcggccggccactggtcaccggagcacagcaaggtggaggatgacttctctctctaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000301 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006890 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010256 GO:0012505 GO:0016043 GO:0016070 GO:0016192 GO:0016787 GO:0016788 GO:0017119 GO:0022607 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048193 GO:0048213 GO:0051179 GO:0051234 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0099023 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COG4 PPR PPR_2 RINT1_TIP1

Protein Analysis

298

Amino Acids

33.0

Weight (kDa)

10.01

Isoelectric Point (pI)

63.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	161 - 202	6.7e-06	Conserved oligomeric Golgi complex subunit 4, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005943)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004219 RLG00000005084 RLG00000010195 RLG00000013467 RLG00000014305 RLG00000028980 RLG00000030839 RLG00000032541
rosa_multiflora	Rmu_co8333173.1_g000001 Rmu_sc0001609.1_g000028 Rmu_sc0003426.1_g000014 Rmu_sc0010981.1_g000007 Rmu_sc0019815.1_g000001 Rmu_sc0023018.1_g000001 Rmu_ssc0000323.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008410 Rroxscaffold_4G00294860 Rroxscaffold_5G00373940
rosa_samantha	Rh2BG307500 Rh2CG285600 Rh3CG238400 Rh4CG114700 Rh5DG479400 Rh5DG522500 Rh6CG228800 Rh6DG235200 Rh7AG303100 Rh7CG263200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
Acc36I	ACCTGC	2 cut(s)	21, 572
AccII	CGCG	5 cut(s)	444, 600, 633, 655, 838
AclWI	GGATC	4 cut(s)	47, 313, 466, 589
AcoI	YGGCCR	3 cut(s)	94, 839, 843
AcyI	GRCGYC	1 cut(s)	408
AfiI	CCNNNNNNNGG	7 cut(s)	679, 751, 758, 765, 807, 821, 848
AgeI	ACCGGT	2 cut(s)	758, 800
AgsI	TTSAA	1 cut(s)	86
AjiI	CACGTC	3 cut(s)	460, 541, 583
AjnI	CCWGG	3 cut(s)	301, 381, 504
AleI	CACNNNNGTG	1 cut(s)	585
AluBI	AGCT	3 cut(s)	465, 637, 697
AluI	AGCT	3 cut(s)	465, 637, 697
Alw21I	GWGCWC	2 cut(s)	341, 863
Alw26I	GTCTC	4 cut(s)	436, 559, 717, 826
AlwI	GGATC	4 cut(s)	47, 313, 466, 589
AoxI	GGCC	4 cut(s)	94, 203, 839, 843
ApeKI	GCWGC	1 cut(s)	213
AsiGI	ACCGGT	2 cut(s)	758, 800
AspLEI	GCGC	3 cut(s)	238, 623, 657
AspS9I	GGNCC	4 cut(s)	241, 385, 508, 628
AsuHPI	GGTGA	6 cut(s)	107, 241, 734, 766, 790, 845
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	4 cut(s)	241, 385, 508, 628
BalI	TGGCCA	1 cut(s)	96
BauI	CACGAG	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	341, 863
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	2 cut(s)	32, 120
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	3 cut(s)	303, 383, 506
BcoDI	GTCTC	4 cut(s)	436, 559, 717, 826
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	239
BfuAI	ACCTGC	2 cut(s)	21, 572
BisI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
BlsI	GCNGC	5 cut(s)	108, 212, 215, 285, 840
Bme1390I	CCNGG	3 cut(s)	303, 383, 506
Bme18I	GGWCC	4 cut(s)	241, 385, 508, 628
BmgBI	CACGTC	3 cut(s)	460, 541, 583
BmgT120I	GGNCC	4 cut(s)	241, 385, 508, 628
BmrFI	CCNGG	3 cut(s)	303, 383, 506
BmrI	ACTGGG	4 cut(s)	251, 328, 643, 703
BmsI	GCATC	4 cut(s)	14, 25, 666, 673
BmuI	ACTGGG	4 cut(s)	251, 328, 643, 703
BpmI	CTGGAG	1 cut(s)	476
Bpu14I	TTCGAA	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	773
BsaHI	GRCGYC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	826
BsaJI	CCNNGG	6 cut(s)	291, 301, 381, 504, 624, 836
BsaWI	WCCGGW	6 cut(s)	744, 751, 758, 786, 800, 855
BsaXI	ACNNNNNCTCC	8 cut(s)	419, 449, 449, 479, 530, 542, 560, 572
Bsc4I	CCNNNNNNNGG	7 cut(s)	679, 751, 758, 765, 807, 821, 848
Bse118I	RCCGGY	4 cut(s)	232, 758, 800, 841
Bse1I	ACTGG	5 cut(s)	257, 334, 649, 709, 853
Bse8I	GATNNNNATC	1 cut(s)	773
BseBI	CCWGG	3 cut(s)	303, 383, 506
BseDI	CCNNGG	6 cut(s)	291, 301, 381, 504, 624, 836
BseGI	GGATG	3 cut(s)	16, 688, 882
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	7 cut(s)	679, 751, 758, 765, 807, 821, 848
BseNI	ACTGG	5 cut(s)	257, 334, 649, 709, 853
BseRI	GAGGAG	8 cut(s)	61, 236, 264, 267, 315, 424, 547, 662
BseX3I	CGGCCG	1 cut(s)	839
BseXI	GCAGC	1 cut(s)	225
Bsh1236I	CGCG	5 cut(s)	444, 600, 633, 655, 838
Bsh1285I	CGRYCG	2 cut(s)	763, 842
BshFI	GGCC	4 cut(s)	96, 205, 841, 845
BshTI	ACCGGT	2 cut(s)	758, 800
BsiEI	CGRYCG	2 cut(s)	763, 842
BsiHKAI	GWGCWC	2 cut(s)	341, 863
BslI	CCNNNNNNNGG	7 cut(s)	679, 751, 758, 765, 807, 821, 848
BsmAI	GTCTC	4 cut(s)	436, 559, 717, 826
BsmBI	CGTCTC	2 cut(s)	436, 559
BsnI	GGCC	4 cut(s)	96, 205, 841, 845
Bso31I	GGTCTC	1 cut(s)	826
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	341, 863
Bsp143I	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
BspANI	GGCC	4 cut(s)	96, 205, 841, 845
BspFNI	CGCG	5 cut(s)	444, 600, 633, 655, 838
BspMI	ACCTGC	2 cut(s)	21, 572
BspPI	GGATC	4 cut(s)	47, 313, 466, 589
BspT104I	TTCGAA	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	826
BsrFI	RCCGGY	4 cut(s)	232, 758, 800, 841
BsrI	ACTGG	5 cut(s)	257, 334, 649, 709, 853
BssAI	RCCGGY	4 cut(s)	232, 758, 800, 841
BssECI	CCNNGG	6 cut(s)	291, 301, 381, 504, 624, 836
BssMI	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
BssNI	GRCGYC	1 cut(s)	408
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	1 cut(s)	624
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	3 cut(s)	303, 383, 506
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	98, 298, 635, 843
BstDEI	CTNAG	1 cut(s)	891
BstDSI	CCRYGG	2 cut(s)	291, 836
BstEII	GGTNACC	2 cut(s)	754, 851
BstF5I	GGATG	3 cut(s)	16, 688, 882
BstFNI	CGCG	5 cut(s)	444, 600, 633, 655, 838
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	3 cut(s)	238, 623, 657
BstKTI	GATC	9 cut(s)	35, 42, 158, 163, 172, 308, 474, 597, 777
BstMAI	GTCTC	4 cut(s)	436, 559, 717, 826
BstMBI	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
BstMCI	CGRYCG	2 cut(s)	763, 842
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 235
BstNI	CCWGG	3 cut(s)	303, 383, 506
BstPI	GGTNACC	2 cut(s)	754, 851
BstSCI	CCNGG	3 cut(s)	301, 381, 504
BstUI	CGCG	5 cut(s)	444, 600, 633, 655, 838
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	3 cut(s)	305, 471, 594
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	3 cut(s)	305, 471, 594
BstZI	CGGCCG	1 cut(s)	839
BsuRI	GGCC	4 cut(s)	96, 205, 841, 845
BtgI	CCRYGG	2 cut(s)	291, 836
BtrI	CACGTC	3 cut(s)	460, 541, 583
BtsCI	GGATG	3 cut(s)	16, 688, 882
BtsIMutI	CAGTG	4 cut(s)	126, 341, 592, 846
BveI	ACCTGC	2 cut(s)	21, 572
Cac8I	GCNNGC	4 cut(s)	98, 298, 635, 843
CfoI	GCGC	3 cut(s)	238, 623, 657
Cfr10I	RCCGGY	4 cut(s)	232, 758, 800, 841
Cfr13I	GGNCC	4 cut(s)	241, 385, 508, 628
Cfr42I	CCGCGG	1 cut(s)	839
CseI	GACGC	1 cut(s)	416
CspAI	ACCGGT	2 cut(s)	758, 800
CviAII	CATG	2 cut(s)	36, 416
DdeI	CTNAG	1 cut(s)	891
DpnI	GATC	9 cut(s)	34, 41, 157, 162, 171, 307, 473, 596, 776
DpnII	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
EaeI	YGGCCR	3 cut(s)	94, 839, 843
EagI	CGGCCG	1 cut(s)	839
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	270
EclXI	CGGCCG	1 cut(s)	839
Eco130I	CCWWGG	1 cut(s)	624
Eco147I	AGGCCT	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	826
Eco47I	GGWCC	4 cut(s)	241, 385, 508, 628
Eco52I	CGGCCG	1 cut(s)	839
Eco91I	GGTNACC	2 cut(s)	754, 851
EcoO109I	RGGNCCY	2 cut(s)	385, 508
EcoO65I	GGTNACC	2 cut(s)	754, 851
EcoRII	CCWGG	3 cut(s)	301, 381, 504
EcoT14I	CCWWGG	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	624
Esp3I	CGTCTC	2 cut(s)	436, 559
FaeI	CATG	2 cut(s)	39, 419
FaiI	YATR	5 cut(s)	10, 37, 150, 223, 417
FatI	CATG	2 cut(s)	35, 415
FauI	CCCGC	1 cut(s)	449
Fnu4HI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
FokI	GGATG	3 cut(s)	3, 695, 889
FseI	GGCCGGCC	1 cut(s)	845
Fsp4HI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	3 cut(s)	237, 622, 656
GluI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	4 cut(s)	96, 205, 841, 845
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	3 cut(s)	238, 623, 657
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	39, 419
Hin6I	GCGC	3 cut(s)	236, 621, 655
HinP1I	GCGC	3 cut(s)	236, 621, 655
HinfI	GANTC	8 cut(s)	86, 269, 739, 748, 769, 790, 795, 811
HphI	GGTGA	6 cut(s)	107, 241, 734, 766, 790, 845
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	7 cut(s)	32, 160, 165, 343, 406, 724, 774
Hpy188III	TCNNGA	1 cut(s)	493
Hpy8I	GTNNAC	1 cut(s)	291
Hpy99I	CGWCG	2 cut(s)	269, 410
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	5 cut(s)	429, 459, 540, 552, 582
HpyCH4V	TGCA	3 cut(s)	16, 221, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 235
HpyF3I	CTNAG	1 cut(s)	891
HpySE526I	ACGT	5 cut(s)	429, 459, 540, 552, 582
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	39, 419
HspAI	GCGC	3 cut(s)	236, 621, 655
KroI	GCCGGC	1 cut(s)	841
KroNI	GCCGGC	1 cut(s)	843
KspI	CCGCGG	1 cut(s)	839
Kzo9I	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
LmnI	GCTCC	5 cut(s)	344, 470, 675, 694, 858
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	4 cut(s)	14, 25, 666, 673
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	5 cut(s)	429, 459, 540, 552, 582
MaeIII	GTNAC	5 cut(s)	740, 754, 782, 796, 851
MalI	GATC	9 cut(s)	34, 41, 157, 162, 171, 307, 473, 596, 776
MboI	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
MboII	GAAGA	2 cut(s)	196, 201
MfeI	CAATTG	1 cut(s)	90
MflI	RGATCY	3 cut(s)	305, 471, 594
MhlI	GDGCHC	2 cut(s)	341, 863
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	2 cut(s)	90, 174
MluNI	TGGCCA	1 cut(s)	96
MlyI	GAGTC	4 cut(s)	263, 748, 804, 820
MmeI	TCCRAC	5 cut(s)	366, 429, 450, 552, 573
Mox20I	TGGCCA	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	841
MscI	TGGCCA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	585
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	838
MspR9I	CCNGG	3 cut(s)	303, 383, 506
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	3 cut(s)	303, 383, 506
MvnI	CGCG	5 cut(s)	444, 600, 633, 655, 838
MwoI	GCNNNNNNNGC	2 cut(s)	106, 235
NaeI	GCCGGC	1 cut(s)	843
NdeII	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
NgoMIV	GCCGGC	1 cut(s)	841
NlaIII	CATG	2 cut(s)	39, 419
NmuCI	GTSAC	4 cut(s)	740, 754, 796, 851
NspV	TTCGAA	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	585
PaqCI	CACCTGC	1 cut(s)	572
PceI	AGGCCT	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	3 cut(s)	456, 537, 579
PdiI	GCCGGC	1 cut(s)	843
PfeI	GAWTC	4 cut(s)	86, 748, 769, 790
PflFI	GACNNNGTC	4 cut(s)	416, 458, 518, 539
PinAI	ACCGGT	2 cut(s)	758, 800
PkrI	GCNGC	5 cut(s)	108, 212, 215, 285, 840
PleI	GAGTC	4 cut(s)	263, 747, 803, 819
PpsI	GAGTC	4 cut(s)	263, 747, 803, 819
PpuMI	RGGWCCY	2 cut(s)	385, 508
Psp5II	RGGWCCY	2 cut(s)	385, 508
Psp6I	CCWGG	3 cut(s)	301, 381, 504
PspEI	GGTNACC	2 cut(s)	754, 851
PspGI	CCWGG	3 cut(s)	301, 381, 504
PspPI	GGNCC	4 cut(s)	241, 385, 508, 628
PspPPI	RGGWCCY	2 cut(s)	385, 508
PsuI	RGATCY	3 cut(s)	305, 471, 594
PsyI	GACNNNGTC	4 cut(s)	416, 458, 518, 539
RigI	GGCCGGCC	1 cut(s)	845
RseI	CAYNNNNRTG	1 cut(s)	585
SacII	CCGCGG	1 cut(s)	839
SatI	GCNGC	5 cut(s)	107, 211, 214, 284, 839
Sau3AI	GATC	9 cut(s)	32, 39, 155, 160, 169, 305, 471, 594, 774
Sau96I	GGNCC	4 cut(s)	241, 385, 508, 628
SchI	GAGTC	4 cut(s)	263, 748, 804, 820
ScrFI	CCNGG	3 cut(s)	303, 383, 506
SduI	GDGCHC	2 cut(s)	341, 863
SfaNI	GCATC	4 cut(s)	14, 25, 666, 673
Sfr303I	CCGCGG	1 cut(s)	839
SfuI	TTCGAA	1 cut(s)	135
SgrAI	CRCCGGYG	1 cut(s)	232
SgrBI	CCGCGG	1 cut(s)	839
SinI	GGWCC	4 cut(s)	241, 385, 508, 628
SmiMI	CAYNNNNRTG	1 cut(s)	585
Sse9I	AATT	2 cut(s)	90, 174
SseBI	AGGCCT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	65
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	3 cut(s)	301, 381, 504
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	5 cut(s)	432, 462, 543, 555, 585
TaqI	TCGA	8 cut(s)	56, 135, 316, 348, 390, 513, 737, 793
TasI	AATT	2 cut(s)	90, 174
TauI	GCSGC	4 cut(s)	109, 213, 286, 841
TfiI	GAWTC	4 cut(s)	86, 748, 769, 790
TscAI	CASTG	4 cut(s)	133, 341, 592, 853
TseFI	GTSAC	4 cut(s)	740, 754, 796, 851
TseI	GCWGC	1 cut(s)	213
Tsp45I	GTSAC	4 cut(s)	740, 754, 796, 851
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	4 cut(s)	133, 341, 592, 853
Tth111I	GACNNNGTC	4 cut(s)	416, 458, 518, 539
VpaK11BI	GGWCC	4 cut(s)	241, 385, 508, 628
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.