Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000341.1

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Reverse (-)

48582 .. 50489

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atggaaggcaggaagaccagaggacggcagaagattgaaataaagaaaattgcaaatgcagacgatcgccatgtcactttttcaaagaggagatctggcgtttacaaaaagtgcaacgagctagcaaccctatgcggtgcagaggttggtgtcgtggtgttctccgaatctgagaaaccattctcgtacggtaacccctctatcgaatccatagctgaccgattcttaaacctccagcctcctcaagaaaatagcgatgacaggatcgctgggtctcttgtgggagcatacaagcatgcaagatacatggagatactaaacaagcacaatgagttagaagacaagctcagggatgaacagcttcgagagaaagtacttctgcagaaagaaagagcaagagcaagtgcagagcaagaaggcctcggctggtggcagcgtcctattaaggagctagactcggaggaactaaaacaaatctctgctagggtttggggcggcggcgtctcctttgagattgtccttccctgtatctactccacttcagtggagtcattcacgggctttggagtgcaaggccattcatggtcttcggaggtcatccgcggtggtgttctggctgatggtgacgatggctgggtattctcttcgagcttgactattgggggaatatgggatcatggtgattttggtctttgggatcaagccggcggctttgcggaaggatccggatccagatctgggatccgggtggttttggcaaacgggttcggatctgggatccgggtggagattgggcttggtctatggctcactatctttggtgggttgtatatcagctacaagattggtttggcacttgtgcattactggtattggattcgagacccatgtttatggtatctgtttgtgaaagatcgcttgccaacatggccatgttctgacacccttggccggcttcgatctttaggtgggagagtgccttcattccggtgccaagttggtttttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

336

Amino Acids

37.57

Weight (kDa)

7.59

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	16 - 63	3.2e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	990
AccII	CGCG	1 cut(s)	603
AccIII	TCCGGA	1 cut(s)	725
AciI	CCGC	7 cut(s)	135, 495, 498, 601, 603, 708, 716
AcoI	YGGCCR	2 cut(s)	929, 949
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	2 cut(s)	188, 375
AfiI	CCNNNNNNNGG	3 cut(s)	24, 738, 951
AgsI	TTSAA	2 cut(s)	38, 84
AleI	CACNNNNGTG	1 cut(s)	542
AluBI	AGCT	7 cut(s)	121, 215, 346, 361, 451, 651, 837
AluI	AGCT	7 cut(s)	121, 215, 346, 361, 451, 651, 837
Alw26I	GTCTC	3 cut(s)	279, 508, 876
Aor13HI	TCCGGA	1 cut(s)	725
AoxI	GGCC	4 cut(s)	418, 574, 929, 949
ApeKI	GCWGC	1 cut(s)	433
Asp700I	GAANNNNTTC	2 cut(s)	179, 360
AsuC2I	CCSGG	2 cut(s)	746, 782
AsuHPI	GGTGA	2 cut(s)	635, 692
AsuNHI	GCTAGC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	931
BamHI	GGATCC	4 cut(s)	722, 728, 741, 777
BanI	GGYRCC	1 cut(s)	990
BbsI	GAAGAC	3 cut(s)	20, 345, 579
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	2 cut(s)	614, 623
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	2 cut(s)	746, 782
BcoDI	GTCTC	3 cut(s)	279, 508, 876
BfaI	CTAG	3 cut(s)	122, 452, 483
BfmI	CTRYAG	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	928
BglII	AGATCT	2 cut(s)	92, 734
BisI	GCNGC	4 cut(s)	434, 496, 499, 709
BlsI	GCNGC	4 cut(s)	435, 497, 500, 710
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	2 cut(s)	746, 782
BmiI	GGNNCC	5 cut(s)	724, 730, 743, 779, 992
BmrFI	CCNGG	2 cut(s)	746, 782
BmtI	GCTAGC	1 cut(s)	125
BpiI	GAAGAC	3 cut(s)	20, 345, 579
BplI	GAGNNNNNCTC	2 cut(s)	440, 472
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	2 cut(s)	746, 782
BsaBI	GATNNNNATC	2 cut(s)	727, 733
BsaHI	GRCGYC	1 cut(s)	501
BsaI	GGTCTC	2 cut(s)	279, 876
BsaJI	CCNNGG	3 cut(s)	421, 601, 946
BsaWI	WCCGGW	2 cut(s)	725, 987
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 738, 951
Bse118I	RCCGGY	2 cut(s)	704, 951
Bse1I	ACTGG	1 cut(s)	872
Bse8I	GATNNNNATC	2 cut(s)	727, 733
BseAI	TCCGGA	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	421, 601, 946
BseGI	GGATG	2 cut(s)	358, 597
BseJI	GATNNNNATC	2 cut(s)	727, 733
BseLI	CCNNNNNNNGG	3 cut(s)	24, 738, 951
BseMII	CTCAG	2 cut(s)	162, 361
BseNI	ACTGG	1 cut(s)	872
BseRI	GAGGAG	2 cut(s)	103, 231
BseXI	GCAGC	1 cut(s)	445
BseYI	CCCAGC	2 cut(s)	269, 633
BsgI	GTGCAG	2 cut(s)	159, 426
Bsh1236I	CGCG	1 cut(s)	603
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	4 cut(s)	420, 576, 931, 951
BshNI	GGYRCC	1 cut(s)	990
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	6 cut(s)	705, 726, 745, 781, 952, 988
BsiWI	CGTACG	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	24, 738, 951
BsmAI	GTCTC	3 cut(s)	279, 508, 876
BsmBI	CGTCTC	1 cut(s)	508
BsnI	GGCC	4 cut(s)	420, 576, 931, 951
Bso31I	GGTCTC	2 cut(s)	279, 876
Bsp13I	TCCGGA	1 cut(s)	725
BspACI	CCGC	7 cut(s)	135, 495, 498, 601, 603, 708, 716
BspANI	GGCC	4 cut(s)	420, 576, 931, 951
BspCNI	CTCAG	2 cut(s)	163, 360
BspEI	TCCGGA	1 cut(s)	725
BspFNI	CGCG	1 cut(s)	603
BspLI	GGNNCC	5 cut(s)	724, 730, 743, 779, 992
BspMAI	CTGCAG	1 cut(s)	384
BspOI	GCTAGC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	990
BspTNI	GGTCTC	2 cut(s)	279, 876
BsrFI	RCCGGY	2 cut(s)	704, 951
BsrI	ACTGG	1 cut(s)	872
BssAI	RCCGGY	2 cut(s)	704, 951
BssECI	CCNNGG	3 cut(s)	421, 601, 946
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	946
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	649
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	5 cut(s)	123, 297, 706, 920, 953
BstDEI	CTNAG	2 cut(s)	171, 347
BstDSI	CCRYGG	1 cut(s)	601
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	2 cut(s)	358, 597
BstFNI	CGCG	1 cut(s)	603
BstMAI	GTCTC	3 cut(s)	279, 508, 876
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	928
BstNSI	RCATGY	1 cut(s)	299
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	744, 780
BstSFI	CTRYAG	1 cut(s)	380
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	3 cut(s)	20, 345, 579
BstX2I	RGATCY	7 cut(s)	92, 722, 728, 734, 741, 770, 777
BstXI	CCANNNNNNTGG	2 cut(s)	544, 894
BstYI	RGATCY	7 cut(s)	92, 722, 728, 734, 741, 770, 777
BsuRI	GGCC	4 cut(s)	420, 576, 931, 951
BtgI	CCRYGG	1 cut(s)	601
BtgZI	GCGATG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	358, 597
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	5 cut(s)	123, 297, 706, 920, 953
Cfr10I	RCCGGY	2 cut(s)	704, 951
Cfr42I	CCGCGG	1 cut(s)	604
CseI	GACGC	2 cut(s)	425, 490
Csp6I	GTAC	2 cut(s)	187, 374
CviAII	CATG	8 cut(s)	71, 296, 307, 582, 677, 888, 927, 933
CviQI	GTAC	2 cut(s)	187, 374
DdeI	CTNAG	2 cut(s)	171, 347
EaeI	YGGCCR	2 cut(s)	929, 949
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	946
Eco147I	AGGCCT	1 cut(s)	420
Eco31I	GGTCTC	2 cut(s)	279, 876
Eco57I	CTGAAG	1 cut(s)	525
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	946
ErhI	CCWWGG	1 cut(s)	946
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	8 cut(s)	74, 299, 310, 585, 680, 891, 930, 936
FatI	CATG	8 cut(s)	70, 295, 306, 581, 676, 887, 926, 932
Fnu4HI	GCNGC	4 cut(s)	434, 496, 499, 709
FokI	GGATG	2 cut(s)	365, 584
Fsp4HI	GCNGC	4 cut(s)	434, 496, 499, 709
FspBI	CTAG	3 cut(s)	122, 452, 483
GluI	GCNGC	4 cut(s)	434, 496, 499, 709
GsaI	CCCAGC	2 cut(s)	273, 637
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	4 cut(s)	420, 576, 931, 951
HapII	CCGG	6 cut(s)	705, 726, 745, 781, 952, 988
HgaI	GACGC	2 cut(s)	425, 490
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	8 cut(s)	74, 299, 310, 585, 680, 891, 930, 936
HinfI	GANTC	6 cut(s)	167, 206, 222, 455, 548, 877
HpaII	CCGG	6 cut(s)	705, 726, 745, 781, 952, 988
HphI	GGTGA	2 cut(s)	635, 692
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	6 cut(s)	166, 172, 460, 592, 770, 940
Hpy188III	TCNNGA	5 cut(s)	245, 365, 726, 732, 881
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	4 cut(s)	410, 530, 713, 990
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	9 cut(s)	53, 59, 114, 140, 299, 382, 407, 571, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	928
HpyF3I	CTNAG	2 cut(s)	171, 347
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	8 cut(s)	74, 299, 310, 585, 680, 891, 930, 936
Kpn2I	TCCGGA	1 cut(s)	725
KroI	GCCGGC	2 cut(s)	704, 951
KroNI	GCCGGC	2 cut(s)	706, 953
KspI	CCGCGG	1 cut(s)	604
LmnI	GCTCC	2 cut(s)	284, 448
Lsp1109I	GCAGC	1 cut(s)	445
MaeI	CTAG	3 cut(s)	122, 452, 483
MaeIII	GTNAC	3 cut(s)	73, 191, 623
MboII	GAAGA	5 cut(s)	25, 43, 350, 579, 636
MflI	RGATCY	7 cut(s)	92, 722, 728, 734, 741, 770, 777
MlsI	TGGCCA	1 cut(s)	931
MluCI	AATT	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	931
MlyI	GAGTC	2 cut(s)	449, 557
Mox20I	TGGCCA	1 cut(s)	931
MroI	TCCGGA	1 cut(s)	725
MroNI	GCCGGC	2 cut(s)	704, 951
MroXI	GAANNNNTTC	2 cut(s)	179, 360
MscI	TGGCCA	1 cut(s)	931
MseI	TTAA	3 cut(s)	227, 444, 1009
MslI	CAYNNNNRTG	4 cut(s)	542, 892, 931, 988
Msp20I	TGGCCA	1 cut(s)	931
MspA1I	CMGCKG	1 cut(s)	603
MspI	CCGG	6 cut(s)	705, 726, 745, 781, 952, 988
MspR9I	CCNGG	2 cut(s)	746, 782
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	928
NaeI	GCCGGC	2 cut(s)	706, 953
NciI	CCSGG	2 cut(s)	746, 782
NgoMIV	GCCGGC	2 cut(s)	704, 951
NheI	GCTAGC	1 cut(s)	121
NlaIII	CATG	8 cut(s)	74, 299, 310, 585, 680, 891, 930, 936
NlaIV	GGNNCC	5 cut(s)	724, 730, 743, 779, 992
NmeAIII	GCCGAG	1 cut(s)	402
NmuCI	GTSAC	2 cut(s)	73, 623
NspI	RCATGY	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	420
PdiI	GCCGGC	2 cut(s)	706, 953
PdmI	GAANNNNTTC	2 cut(s)	179, 360
PfeI	GAWTC	4 cut(s)	167, 206, 222, 877
Pfl23II	CGTACG	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	435, 497, 500, 710
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	2 cut(s)	449, 556
PpsI	GAGTC	2 cut(s)	449, 556
PspEI	GGTNACC	1 cut(s)	191
PspFI	CCCAGC	2 cut(s)	269, 633
PspLI	CGTACG	1 cut(s)	186
PspN4I	GGNNCC	5 cut(s)	724, 730, 743, 779, 992
PstI	CTGCAG	1 cut(s)	384
PsuI	RGATCY	7 cut(s)	92, 722, 728, 734, 741, 770, 777
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	2 cut(s)	188, 375
RsaNI	GTAC	2 cut(s)	187, 374
RseI	CAYNNNNRTG	4 cut(s)	542, 892, 931, 988
SacII	CCGCGG	1 cut(s)	604
SaqAI	TTAA	3 cut(s)	227, 444, 1009
SatI	GCNGC	4 cut(s)	434, 496, 499, 709
ScaI	AGTACT	1 cut(s)	375
SchI	GAGTC	2 cut(s)	449, 557
ScrFI	CCNGG	2 cut(s)	746, 782
SfcI	CTRYAG	1 cut(s)	380
Sfr303I	CCGCGG	1 cut(s)	604
SgrBI	CCGCGG	1 cut(s)	604
SmiMI	CAYNNNNRTG	4 cut(s)	542, 892, 931, 988
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	1 cut(s)	48
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	7 cut(s)	135, 495, 498, 601, 603, 708, 716
SspMI	CTAG	3 cut(s)	122, 452, 483
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	744, 780
StyI	CCWWGG	1 cut(s)	946
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	5 cut(s)	204, 364, 647, 880, 958
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	3 cut(s)	498, 501, 711
TfiI	GAWTC	4 cut(s)	167, 206, 222, 877
Tru1I	TTAA	3 cut(s)	227, 444, 1009
Tru9I	TTAA	3 cut(s)	227, 444, 1009
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	2 cut(s)	73, 623
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	2 cut(s)	73, 623
TspDTI	ATGAA	3 cut(s)	369, 570, 972
TspRI	CASTG	1 cut(s)	549
XceI	RCATGY	1 cut(s)	299
XmnI	GAANNNNTTC	2 cut(s)	179, 360
XspI	CTAG	3 cut(s)	122, 452, 483
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.