Rmu_ssc0000400.1_g000090

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000400.1
OG0006905
Physical Location & Seq
Forward (+)
338873 .. 340076
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 960 bp
atgatattaactgtggcaggtactataccagaagctattggtcgtcttgaaaatttacaggctttgtcgttgtttggtaataatctctatggccccatcccatccacaatcttcaacatgtccaagataataaaaatttcgcttgctattaaccatatctcaggtagcctccctgcaaacatgggtagtaggctaccaaacttagaagagttctatgtaccagataataatctcagcggattaatccccaacctcatctcaaatgcttctaagctcataaaaatagacctggccttgaacacattttctggctctgttccaacaactctttgtgcctcaccaaaccttcaattgcttcaactagagctgaataatttgaccattgatacgtctagtccaaaagcaagcatattctcatgtttgggagaacttagaaatttgagggggctatccctgtatggcaatcctttaaatgtcccacttcctagttcacttgggaacctatcttcatctcttcaaaaccttgatataagcatctgcaacatgagaggtaacattcccaatgagataggcaacttgaccagcttgacattcttaaacttggaatacaatcaattgtcgggatcaattccaacttcaatgggaagattggggaatctccaaggtttgtacttgaataataacaaattgcaaggatacatcccagatgaactttgtgaactaaggaacctatataacttatttttgggtggtaatctactcactggtcctataccttcttgcatggacgaaattgcctcctcgtcggtgcttgaagggttattggcaaacgtctcccaggagtacagcgatcaaactttcctccagaagaagcactacaatcttgaggatcaacgaacacaaattgtgtttttctctctcaatctcttaaactctaatgtgatatgtagaaagttttga

Protein Analysis

319

Amino Acids

34.75

Weight (kDa)

5.26

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 131 - 247 1.4e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 8
AciI CCGC 1 cut(s) 237
AclWI GGATC 2 cut(s) 631, 897
AcsI RAATTY 3 cut(s) 52, 135, 436
AfaI GTAC 4 cut(s) 22, 219, 671, 845
AflIII ACRYGT 1 cut(s) 117
AgsI TTSAA 9 cut(s) 50, 115, 298, 350, 359, 518, 639, 676, 815
AjnI CCWGG 2 cut(s) 288, 837
AluBI AGCT 4 cut(s) 35, 274, 367, 585
AluI AGCT 4 cut(s) 35, 274, 367, 585
Alw26I GTCTC 1 cut(s) 838
AlwI GGATC 2 cut(s) 631, 897
AoxI GGCC 2 cut(s) 91, 291
ApoI RAATTY 3 cut(s) 52, 135, 436
AseI ATTAAT 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 92, 767
AsuHPI GGTGA 1 cut(s) 330
AvaII GGWCC 1 cut(s) 767
BarI GAAGNNNNNNTAC 2 cut(s) 860, 892
BccI CCATC 2 cut(s) 104, 109
BciT130I CCWGG 2 cut(s) 290, 839
BciVI GTATCC 1 cut(s) 689
BcoDI GTCTC 1 cut(s) 838
BfaI CTAG 3 cut(s) 362, 393, 486
BfuAI ACCTGC 1 cut(s) 8
BfuI GTATCC 1 cut(s) 689
Bme1390I CCNGG 2 cut(s) 290, 839
Bme18I GGWCC 1 cut(s) 767
BmgT120I GGNCC 2 cut(s) 92, 767
BmiI GGNNCC 3 cut(s) 94, 500, 728
BmrFI CCNGG 2 cut(s) 290, 839
BmsI GCATC 1 cut(s) 543
BpmI CTGGAG 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 905
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 661, 837
Bse1I ACTGG 1 cut(s) 769
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 2 cut(s) 290, 839
BseDI CCNNGG 2 cut(s) 661, 837
BseGI GGATG 3 cut(s) 96, 101, 699
BseJI GATNNNNATC 1 cut(s) 228
BseMII CTCAG 2 cut(s) 174, 247
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 1 cut(s) 790
BshFI GGCC 2 cut(s) 93, 293
BslFI GGGAC 1 cut(s) 461
BsmAI GTCTC 1 cut(s) 838
BsmBI CGTCTC 1 cut(s) 838
BsmFI GGGAC 1 cut(s) 461
BsnI GGCC 2 cut(s) 93, 293
Bsp143I GATC 3 cut(s) 623, 850, 889
BspACI CCGC 1 cut(s) 237
BspANI GGCC 2 cut(s) 93, 293
BspCNI CTCAG 2 cut(s) 173, 246
BspLI GGNNCC 3 cut(s) 94, 500, 728
BspMI ACCTGC 1 cut(s) 8
BspPI GGATC 2 cut(s) 631, 897
BsrI ACTGG 1 cut(s) 769
BssECI CCNNGG 2 cut(s) 661, 837
BssMI GATC 3 cut(s) 623, 850, 889
BssT1I CCWWGG 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 290, 839
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 201, 519
BstC8I GCNNGC 2 cut(s) 144, 406
BstDEI CTNAG 6 cut(s) 160, 202, 233, 270, 431, 722
BstF5I GGATG 3 cut(s) 96, 101, 699
BstKTI GATC 3 cut(s) 626, 853, 892
BstMAI GTCTC 1 cut(s) 838
BstMBI GATC 3 cut(s) 623, 850, 889
BstNI CCWGG 2 cut(s) 290, 839
BstNSI RCATGY 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 288, 837
BsuI GTATCC 1 cut(s) 689
BsuRI GGCC 2 cut(s) 93, 293
BtsCI GGATG 3 cut(s) 96, 101, 699
BtsIMutI CAGTG 1 cut(s) 762
BveI ACCTGC 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 144, 406
Cfr13I GGNCC 2 cut(s) 92, 767
Csp6I GTAC 4 cut(s) 21, 218, 670, 844
CviAII CATG 5 cut(s) 118, 181, 417, 544, 784
CviQI GTAC 4 cut(s) 21, 218, 670, 844
DdeI CTNAG 6 cut(s) 160, 202, 233, 270, 431, 722
DpnI GATC 3 cut(s) 625, 852, 891
DpnII GATC 3 cut(s) 623, 850, 889
DraI TTTAAA 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 201, 519
EarI CTCTTC 2 cut(s) 201, 519
Eco130I CCWWGG 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 288, 837
EcoT14I CCWWGG 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 661
Esp3I CGTCTC 1 cut(s) 838
FaeI CATG 5 cut(s) 121, 184, 420, 547, 787
FaqI GGGAC 1 cut(s) 461
FatI CATG 5 cut(s) 117, 180, 416, 543, 783
FokI GGATG 3 cut(s) 83, 88, 686
FspBI CTAG 3 cut(s) 362, 393, 486
GsuI CTGGAG 1 cut(s) 848
HaeIII GGCC 2 cut(s) 93, 293
Hin1II CATG 5 cut(s) 121, 184, 420, 547, 787
HinfI GANTC 1 cut(s) 655
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 2 cut(s) 491, 719
Hpy188III TCNNGA 4 cut(s) 47, 621, 865, 884
Hpy8I GTNNAC 2 cut(s) 491, 719
Hpy99I CGWCG 1 cut(s) 808
HpyAV CCTTC 3 cut(s) 356, 786, 809
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 2 cut(s) 389, 831
HpyCH4V TGCA 4 cut(s) 176, 540, 691, 783
HpyF3I CTNAG 6 cut(s) 160, 202, 233, 270, 431, 722
HpySE526I ACGT 2 cut(s) 389, 831
Hsp92II CATG 5 cut(s) 121, 184, 420, 547, 787
Kzo9I GATC 3 cut(s) 623, 850, 889
LweI GCATC 1 cut(s) 543
MaeI CTAG 3 cut(s) 362, 393, 486
MaeII ACGT 2 cut(s) 389, 831
MaeIII GTNAC 1 cut(s) 551
MalI GATC 3 cut(s) 625, 852, 891
MboI GATC 3 cut(s) 623, 850, 889
MboII GAAGA 6 cut(s) 103, 218, 498, 506, 657, 880
MfeI CAATTG 2 cut(s) 350, 614
MmeI TCCRAC 2 cut(s) 344, 656
MnlI CCTC 9 cut(s) 179, 263, 346, 435, 542, 808, 811, 872, 880
MseI TTAA 6 cut(s) 8, 150, 242, 470, 596, 929
MspA1I CMGCKG 1 cut(s) 237
MspR9I CCNGG 2 cut(s) 290, 839
MunI CAATTG 2 cut(s) 350, 614
MvaI CCWGG 2 cut(s) 290, 839
NdeII GATC 3 cut(s) 623, 850, 889
NlaIII CATG 5 cut(s) 121, 184, 420, 547, 787
NlaIV GGNNCC 3 cut(s) 94, 500, 728
NspI RCATGY 1 cut(s) 121
PciI ACATGT 1 cut(s) 117
PfeI GAWTC 1 cut(s) 655
PscI ACATGT 1 cut(s) 117
PshBI ATTAAT 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 288, 837
PspGI CCWGG 2 cut(s) 288, 837
PspN4I GGNNCC 3 cut(s) 94, 500, 728
PspPI GGNCC 2 cut(s) 92, 767
RsaI GTAC 4 cut(s) 22, 219, 671, 845
RsaNI GTAC 4 cut(s) 21, 218, 670, 844
SaqAI TTAA 6 cut(s) 8, 150, 242, 470, 596, 929
Sau3AI GATC 3 cut(s) 623, 850, 889
Sau96I GGNCC 2 cut(s) 92, 767
ScrFI CCNGG 2 cut(s) 290, 839
SfaNI GCATC 1 cut(s) 543
SinI GGWCC 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 884
SmoI CTYRAG 1 cut(s) 884
SsiI CCGC 1 cut(s) 237
SspMI CTAG 3 cut(s) 362, 393, 486
StyD4I CCNGG 2 cut(s) 288, 837
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 2 cut(s) 392, 834
TatI WGTACW 2 cut(s) 669, 843
TfiI GAWTC 1 cut(s) 655
Tru1I TTAA 6 cut(s) 8, 150, 242, 470, 596, 929
Tru9I TTAA 6 cut(s) 8, 150, 242, 470, 596, 929
TscAI CASTG 1 cut(s) 769
TspDTI ATGAA 2 cut(s) 498, 723
TspRI CASTG 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 767
VspI ATTAAT 1 cut(s) 242
XapI RAATTY 3 cut(s) 52, 135, 436
XceI RCATGY 1 cut(s) 121
XspI CTAG 3 cut(s) 362, 393, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.