Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002889

Physical Location & Seq

Genomic Coordinates Forward (+)

2881963 .. 2883885

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCGTCCCATTGGTGTAAAGGAATCTGGTCATCAGATCTGAGGAAGAATGTGCATCTGGTGTTGAAGAAGTGTGAGAGCCCATCACCACGGTCACCTCCTCGGACTCGACCTTGGCCGCAATGGTCGTCGCCCATTTCCTCATCTCCGCCTGTGCAGTTCAACATCGCCAACCTCACCACCGGTTGCCAGAAGAAGTTGGAGATCGATGACGACCATAAACTGAGTGCCTCTTCTGACAAGAGGAACTCACAGGAATTGAGTGGAGATGCCTTTGGAGAGGAATTTAAGGGATATGTCTTTAAGATTATGGGAGGCTGTGTGACAAGCGAGGCTGTTGGTGCCATATTGTCAGTAACCGATTCAGTTTGTACATTGCAGGTTCTTAGTCAAGATGACACTCCCTTTCTCTACATTGTCGTATTCGGGGAGGGAGTAGTGAATGATGCTACCTCTATCGTGCTCTTCAATGCAGTACAATCACTAGACGTGAGCAATGTCAGCGGTCTTACAGCCTTGAAATTGTTAGGCACCTTTCTTTACCTCTTCTTCACCAGCACTCTTCTTTGTATAGCAGCTGGTCTTATAAGCGCTTATATCATAAAAACACTCTACTTTGGAAGGTATGAGGGAACACTTCTGGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

216

Amino Acids

23.61

Weight (kDa)

5.91

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6e	PF01092	53 - 107	2.1e-11	Ribosomal protein S6e
Na_H_Exchanger	PF00999	105 - 204	2.7e-11	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56870
fragaria_vesca	FvH4_1g07401 FvH4_1g07410 FvH4_1g07410
malus_domestica	MD02G1079200.v1.1 MD08G1139000.v1.1 MD13G1126600.v1.1 MD15G1206800.v1.1
prunus_persica	Prupe.7G210000_v2.0.a1 Prupe.7G210000_v2.0.a1
pyrus_communis	pycom02g06300 pycom15g18320
rosa_chinensis	RchiOBHm_Chr2g0093301 RchiOBHm_Chr2g0093311 RchiOBHm_Chr3g0459401 RchiOBHm_Chr3g0459561
rosa_laevigata	RLG00000016388 RLG00000016389 RLG00000025083
rosa_multiflora	Rmu_sc0002089.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148200 Rroxscaffold_2G00148210 Rroxscaffold_5G00345960
rosa_rugosa	Rorug02G0034700.1 Rorug03G0036300
rosa_samantha	Rh2AG080700 Rh2AG080800 Rh2CG084000 Rh2DG079700 Rh3AG094200 Rh3BG097100 Rh3CG098400 Rh3DG097900 Rh3DG098900
rosa_wichuraiana	Rw2G006600 Rw2G006610 Rw3G008110 Rw3G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
Acc36I	ACCTGC	1 cut(s)	370
AccB1I	GGYRCC	2 cut(s)	341, 530
AciI	CCGC	3 cut(s)	119, 149, 504
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	2 cut(s)	373, 477
AfeI	AGCGCT	1 cut(s)	592
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	67, 163, 469, 520
AjiI	CACGTC	1 cut(s)	490
AluBI	AGCT	1 cut(s)	578
AluI	AGCT	1 cut(s)	578
Alw21I	GWGCWC	1 cut(s)	465
Aor51HI	AGCGCT	1 cut(s)	592
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	284
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	593
AsuHPI	GGTGA	4 cut(s)	78, 87, 169, 544
BanI	GGYRCC	2 cut(s)	341, 530
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	370
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	2 cut(s)	119, 576
BlsI	GCNGC	2 cut(s)	120, 577
BmgBI	CACGTC	1 cut(s)	490
BmiI	GGNNCC	2 cut(s)	343, 532
BmsI	GCATC	3 cut(s)	64, 259, 436
Bsa29I	ATCGAT	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	89, 101, 113
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bse118I	RCCGGY	1 cut(s)	182
Bse3DI	GCAATG	3 cut(s)	128, 374, 502
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	3 cut(s)	89, 101, 113
BseMI	GCAATG	3 cut(s)	128, 374, 502
BseMII	CTCAG	2 cut(s)	32, 215
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	587
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	118
BshNI	GGYRCC	2 cut(s)	341, 530
BshTI	ACCGGT	1 cut(s)	182
BshVI	ATCGAT	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	183
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	83, 465
Bsp1407I	TGTACA	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	37, 204
BspACI	CCGC	3 cut(s)	119, 149, 504
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	33, 216
BspDI	ATCGAT	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	343, 532
BspMI	ACCTGC	1 cut(s)	370
BspQI	GCTCTTC	1 cut(s)	470
BspT107I	GGYRCC	2 cut(s)	341, 530
BsrDI	GCAATG	3 cut(s)	128, 374, 502
BsrFI	RCCGGY	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	89, 101, 113
BssMI	GATC	2 cut(s)	37, 204
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	4 cut(s)	238, 470, 551, 567
BstAUI	TGTACA	1 cut(s)	371
BstDEI	CTNAG	3 cut(s)	41, 224, 386
BstDSI	CCRYGG	1 cut(s)	89
BstEII	GGTNACC	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	2 cut(s)	40, 207
BstMBI	GATC	2 cut(s)	37, 204
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 501
BstPI	GGTNACC	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	587
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	118
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	89
BtgZI	GCGATG	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	490
BveI	ACCTGC	1 cut(s)	370
CfoI	GCGC	1 cut(s)	593
Cfr10I	RCCGGY	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	372, 476
CspAI	ACCGGT	1 cut(s)	182
CviJI	RGCY	6 cut(s)	81, 118, 318, 335, 515, 578
CviKI_1	RGCY	6 cut(s)	81, 118, 318, 335, 515, 578
CviQI	GTAC	2 cut(s)	372, 476
DdeI	CTNAG	3 cut(s)	41, 224, 386
DpnI	GATC	2 cut(s)	39, 206
DpnII	GATC	2 cut(s)	37, 204
EaeI	YGGCCR	1 cut(s)	116
Eam1104I	CTCTTC	4 cut(s)	238, 470, 551, 567
EarI	CTCTTC	4 cut(s)	238, 470, 551, 567
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	83
Eco47III	AGCGCT	1 cut(s)	592
Eco91I	GGTNACC	1 cut(s)	93
EcoO65I	GGTNACC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	113
FaiI	YATR	9 cut(s)	219, 297, 311, 347, 572, 587, 597, 602, 627
Fnu4HI	GCNGC	2 cut(s)	119, 576
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	2 cut(s)	119, 576
FspBI	CTAG	1 cut(s)	485
GlaI	GCGC	1 cut(s)	592
GluI	GCNGC	2 cut(s)	119, 576
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	593
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HinfI	GANTC	3 cut(s)	24, 106, 362
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	4 cut(s)	78, 87, 169, 544
Hpy188I	TCNGA	4 cut(s)	37, 42, 105, 238
Hpy188III	TCNNGA	2 cut(s)	392, 641
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	4 cut(s)	55, 157, 379, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 501
HpyF3I	CTNAG	3 cut(s)	41, 224, 386
HpySE526I	ACGT	1 cut(s)	489
HspAI	GCGC	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	37, 204
LguI	GCTCTTC	1 cut(s)	470
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	3 cut(s)	64, 259, 436
MaeI	CTAG	1 cut(s)	485
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	3 cut(s)	93, 322, 355
MalI	GATC	2 cut(s)	39, 206
MboI	GATC	2 cut(s)	37, 204
MboII	GAAGA	8 cut(s)	58, 79, 205, 225, 457, 538, 541, 554
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	83, 465
MluCI	AATT	3 cut(s)	257, 284, 521
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	180
MseI	TTAA	2 cut(s)	288, 303
MspA1I	CMGCKG	2 cut(s)	504, 578
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	341, 501
NdeII	GATC	2 cut(s)	37, 204
NlaIV	GGNNCC	2 cut(s)	343, 532
NmuCI	GTSAC	2 cut(s)	93, 322
PciSI	GCTCTTC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	24, 362
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	120, 577
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	343, 532
PsuI	RGATCY	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	2 cut(s)	373, 477
RsaNI	GTAC	2 cut(s)	372, 476
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	288, 303
SatI	GCNGC	2 cut(s)	119, 576
Sau3AI	GATC	2 cut(s)	37, 204
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	2 cut(s)	83, 465
SfaNI	GCATC	3 cut(s)	64, 259, 436
Sse9I	AATT	3 cut(s)	257, 284, 521
SsiI	CCGC	3 cut(s)	119, 149, 504
SspMI	CTAG	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	2 cut(s)	109, 207
TasI	AATT	3 cut(s)	257, 284, 521
TatI	WGTACW	2 cut(s)	371, 475
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	24, 362
Tru1I	TTAA	2 cut(s)	288, 303
Tru9I	TTAA	2 cut(s)	288, 303
TseFI	GTSAC	2 cut(s)	93, 322
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	93, 322
XapI	RAATTY	1 cut(s)	284
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.