Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002889

Physical Location & Seq

Genomic Coordinates Forward (+)

7534559 .. 7536757

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGATTAGATTTTCTGAAACAATGTGGAACTCTAACACGTTGAGAGCCAAGGCCAACATGTTCCTGCTACTGTTTCTGGTTTCATGGTTCTCTTCTGCTTTAGCCTCTGTGGGTTATGACCACAGAGCTATTATAGTCGATGGAAAGAGAAGGATTCTTATTTCAGGGTCTATTCACTACCCCAGAAGCACACCTGAGATGTGGCCGGATTTGATTCAGAAGGCTAAAGATGGAGGCTTGGATGTGATACAGACTTATGTGTTCTGGAATGGGCATGAACCTAGCCCAGGAAAATATTATTTTGAGGATAGATATGATTTGGTCAAGTTCATCAAGCTGGCTCAACTTCATGGCCTATATGTTCATCTTCGGATTGGTCCTTATATTTGTGCTGAATGGAACTTAGGAGGATTCCCTGTTTGGCTGAAATATGTTCCCGGAATCGCTTTCAGAACAGACAATCGTCCTTTCATGGCAGCAATGGAAAAATTTACACAGAAGATTGTGTATATGATGAAGGCAGAAGGGTTGTTCCAAACTCAGGGAGGTCCTATAATTCTGTCTCAGATTGAAAATGAATTTGGACCGGTAGAGTGGGAAATTGGTGCACCTGGTAAATCTTATACTCAATGGGCTGTGAAAATGGCTGTGGCACTCAACACTGGGGTTCCATGGATTATGTGCAAGCAAGAAGATGCCCCTGATCCAATCATCGATACTTGTAATGGCTTCTACTGTGAAAACTTCACTCCAAACAAGAACTATAAGCCCAAAATTTGGACAGAAATCTGGACTGGCTGGTATACAGAATTTGGTGGGGCAGTTCCTACTAGACCTGCACAGGACTTGGCATTTTCAGTAGCAAGGTTTATACAAAATGGTGGTTCTTTTGCCAATTACTACATGTTCCATGGAGGAACAAATTTTGGCAGAACTGCTGGCGGTCCCTTCATCGCAACTAGCTATGACTATGATGCCCCTCTCGATGAATATGGACTACCAAGGGAACCAAAATATAGCCATTTGAAATATTTGCACAAAGCCATCAAATTAGCTGAGTCAGCTTTAGTGGCTACTGATGCTGCAGTGTCAAAACTCGGAAGTAATCAAGAGGCTCATGTATACCAGTCGATATCTGGTTGTGCTGCATTCCTTGCAAATTACGACACAAAATACTCCGTGAGTGTGATGTTTTGGAATAAGCAATATAACCTGCCACCTTGGTCCATAAGCATTCTCCCTGACTGCAAAACTGAAGTTTTCAACACTGCAAGGATTGGCCAGAGCGCGTCGACGAAGATGACACCAGTAGCATCCCTTTCTTGGCAGGCGTACATGGAAGAAATTGCCACTGCTAATGATGACAATGCAATTACACTGGTCGGACTTCGTGAGCAAATAAGTCAAACTAGGGATGCTACAGACTACTTGTGGTACATGACCAATATCACAATAGGTCCTAATGAACAATTTCTAAGAACCGGACAGTACCCTATTCTCACTGTCGATTCAGCTGGGCATGCCTTGCTTGTTTTCATCAATGGTCAACTATCAGGATCTGCTTATGGAACATTGGAGTTCCCCAAATTAGAATTCAAGCAGGGTGTGAAGCTGAGAGTTGGCATTAACGAGCTTGCTTTACTAAGCGTTTCTGTTGGTCTACCGAATGTTGGTGTGCACTTTGAGACATGGAATGCTGGAGTTCTAGGGCCAGTCACATTGAAGGGTGTGAATTCGGGAACATGGGATATGTCACGATGGCAATGGACCTATAAGACTGGTATGAAAGGTGAAGATATGAGCCTCCATACCGTGGGTGGAAGTTCTTCTATTGAATGGGTACAAGGATCACTATTGGCTCAAAATCAACCCCTTGCATGGTACAAGGCTATTTTAGATGCACCACCAGGAAATGCACCATTAGCTTTAGATATGGGTAGCATGGGAAAGGGTCAAATGTGGATTAATGGTCGGAGCATCGGACGCCATTGGCCAGCATATACAGCAAAAGGCACCTGTGGTACTTGTTATTATGCTGGAACTTATACTGAAAACAAATGCCGAACAAATTGTGGCCAGCCTTCCCAGAGATGGTACCATGTTCCTCGCTCGTGGTTGAAGCCAAGTGGGAATTTATTGGTTGTGTTTGAAGAATGGGGTGGTGATCCGACTAAGATTGCTTTGGTAGCAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

732

Amino Acids

81.8

Weight (kDa)

8.13

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	44 - 348	2.5e-119	Glycosyl hydrolases family 35
GHD	PF17834	371 - 426	3.8e-22	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	476 - 524	6.2e-06	Beta-galactosidase, galactose-binding domain
BetaGal_gal-bd	PF21467	625 - 711	1.1e-23	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56870
fragaria_vesca	FvH4_1g07401 FvH4_1g07410 FvH4_1g07410
malus_domestica	MD02G1079200.v1.1 MD08G1139000.v1.1 MD13G1126600.v1.1 MD15G1206800.v1.1
prunus_persica	Prupe.7G210000_v2.0.a1 Prupe.7G210000_v2.0.a1
pyrus_communis	pycom02g06300 pycom15g18320
rosa_chinensis	RchiOBHm_Chr2g0093301 RchiOBHm_Chr2g0093311 RchiOBHm_Chr3g0459401 RchiOBHm_Chr3g0459561
rosa_laevigata	RLG00000016388 RLG00000016389 RLG00000025083
rosa_multiflora	Rmu_sc0002089.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148200 Rroxscaffold_2G00148210 Rroxscaffold_5G00345960
rosa_rugosa	Rorug02G0034700.1 Rorug03G0036300
rosa_samantha	Rh2AG080700 Rh2AG080800 Rh2CG084000 Rh2DG079700 Rh3AG094200 Rh3BG097100 Rh3CG098400 Rh3DG097900 Rh3DG098900
rosa_wichuraiana	Rw2G006600 Rw2G006610 Rw3G008110 Rw3G008200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	844, 1221
Acc65I	GGTACC	1 cut(s)	2094
AccB1I	GGYRCC	2 cut(s)	2012, 2094
AccB7I	CCANNNNNTGG	2 cut(s)	777, 1813
AccI	GTMKAC	4 cut(s)	803, 1122, 1292, 1660
AccII	CGCG	1 cut(s)	1289
AciI	CCGC	1 cut(s)	942
AclWI	GGATC	4 cut(s)	698, 1564, 1855, 2159
AcoI	YGGCCR	4 cut(s)	203, 1279, 1991, 2074
AcsI	RAATTY	8 cut(s)	488, 578, 774, 809, 922, 1592, 1732, 2131
AcuI	CTGAAG	1 cut(s)	1275
AcyI	GRCGYC	1 cut(s)	1984
AfaI	GTAC	7 cut(s)	1334, 1436, 1490, 1842, 1883, 2023, 2096
AfiI	CCNNNNNNNGG	8 cut(s)	287, 541, 777, 1323, 1670, 1813, 1878, 2091
AflIII	ACRYGT	3 cut(s)	36, 57, 903
AgeI	ACCGGT	1 cut(s)	586
AgsI	TTSAA	8 cut(s)	572, 1027, 1264, 1597, 1723, 1835, 2119, 2150
AjnI	CCWGG	3 cut(s)	286, 610, 1906
AjuI	GAANNNNNNNTTGG	4 cut(s)	564, 596, 1577, 1609
AluBI	AGCT	9 cut(s)	128, 337, 963, 1055, 1064, 1514, 1612, 1633, 1925
AluI	AGCT	9 cut(s)	128, 337, 963, 1055, 1064, 1514, 1612, 1633, 1925
Alw21I	GWGCWC	2 cut(s)	610, 1680
Alw26I	GTCTC	2 cut(s)	567, 1679
Alw44I	GTGCAC	2 cut(s)	606, 1676
AlwI	GGATC	4 cut(s)	698, 1564, 1855, 2159
AlwNI	CAGNNNCTG	1 cut(s)	1559
AoxI	GGCC	7 cut(s)	51, 203, 352, 1279, 1709, 1991, 2074
ApaLI	GTGCAC	2 cut(s)	606, 1676
ApeKI	GCWGC	3 cut(s)	476, 1082, 1145
ApoI	RAATTY	8 cut(s)	488, 578, 774, 809, 922, 1592, 1732, 2131
AseI	ATTAAT	1 cut(s)	1965
AsiGI	ACCGGT	1 cut(s)	586
Asp700I	GAANNNNTTC	2 cut(s)	1470, 1825
Asp718I	GGTACC	1 cut(s)	2094
AspLEI	GCGC	1 cut(s)	1289
AspS9I	GGNCC	8 cut(s)	377, 548, 584, 944, 1224, 1457, 1709, 1767
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	2 cut(s)	1802, 2174
AvaII	GGWCC	7 cut(s)	377, 548, 584, 944, 1224, 1457, 1767
BaeGI	GKGCMC	2 cut(s)	610, 1680
BalI	TGGCCA	3 cut(s)	1281, 1993, 2076
BanI	GGYRCC	2 cut(s)	2012, 2094
BauI	CACGAG	1 cut(s)	2110
Bbv12I	GWGCWC	2 cut(s)	610, 1680
BbvI	GCAGC	3 cut(s)	488, 1069, 1132
BccI	CCATC	5 cut(s)	134, 224, 1052, 1752, 2085
BciT130I	CCWGG	3 cut(s)	288, 612, 1908
BcnI	CCSGG	1 cut(s)	438
BcoDI	GTCTC	2 cut(s)	567, 1679
BfaI	CTAG	5 cut(s)	282, 831, 960, 1410, 1706
BfmI	CTRYAG	2 cut(s)	1083, 1419
BfuAI	ACCTGC	2 cut(s)	844, 1221
BisI	GCNGC	3 cut(s)	477, 1083, 1146
BlsI	GCNGC	3 cut(s)	478, 1084, 1147
Bme1390I	CCNGG	4 cut(s)	288, 438, 612, 1908
Bme18I	GGWCC	7 cut(s)	377, 548, 584, 944, 1224, 1457, 1767
BmgT120I	GGNCC	8 cut(s)	377, 548, 584, 944, 1224, 1457, 1709, 1767
BmiI	GGNNCC	5 cut(s)	669, 946, 1008, 2014, 2096
BmrFI	CCNGG	4 cut(s)	288, 438, 612, 1908
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	7 cut(s)	685, 964, 1069, 1322, 1405, 1888, 1986
BmuI	ACTGGG	1 cut(s)	672
BoxI	GACNNNNGTC	1 cut(s)	462
BpmI	CTGGAG	1 cut(s)	1719
BpuMI	CCSGG	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	1984
BsaJI	CCNNGG	7 cut(s)	48, 286, 671, 910, 1001, 1220, 1812
BsaWI	WCCGGW	2 cut(s)	586, 1481
Bsc4I	CCNNNNNNNGG	8 cut(s)	287, 541, 777, 1323, 1670, 1813, 1878, 2091
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	7 cut(s)	667, 799, 1126, 1307, 1383, 1712, 1783
Bse3DI	GCAATG	2 cut(s)	486, 1769
BseBI	CCWGG	3 cut(s)	288, 612, 1908
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	7 cut(s)	48, 286, 671, 910, 1001, 1220, 1812
BseGI	GGATG	3 cut(s)	247, 1313, 1420
BseLI	CCNNNNNNNGG	8 cut(s)	287, 541, 777, 1323, 1670, 1813, 1878, 2091
BseMI	GCAATG	2 cut(s)	486, 1769
BseMII	CTCAG	5 cut(s)	186, 554, 578, 1047, 1604
BseNI	ACTGG	7 cut(s)	667, 799, 1126, 1307, 1383, 1712, 1783
BseSI	GKGCMC	2 cut(s)	610, 1680
BseXI	GCAGC	3 cut(s)	488, 1069, 1132
BseYI	CCCAGC	1 cut(s)	1514
BsgI	GTGCAG	1 cut(s)	822
Bsh1236I	CGCG	1 cut(s)	1289
BshFI	GGCC	7 cut(s)	53, 205, 354, 1281, 1711, 1993, 2076
BshNI	GGYRCC	2 cut(s)	2012, 2094
BshTI	ACCGGT	1 cut(s)	586
BshVI	ATCGAT	1 cut(s)	714
BsiHKAI	GWGCWC	2 cut(s)	610, 1680
BsiSI	CCGG	4 cut(s)	206, 438, 587, 1482
BslFI	GGGAC	1 cut(s)	930
BslI	CCNNNNNNNGG	8 cut(s)	287, 541, 777, 1323, 1670, 1813, 1878, 2091
BsmAI	GTCTC	2 cut(s)	567, 1679
BsmFI	GGGAC	1 cut(s)	930
BsmI	GAATGC	3 cut(s)	1148, 1233, 1699
BsnI	GGCC	7 cut(s)	53, 205, 354, 1281, 1711, 1993, 2076
Bsp1286I	GDGCHC	2 cut(s)	610, 1680
Bsp143I	GATC	4 cut(s)	703, 1556, 1847, 2164
Bsp19I	CCATGG	2 cut(s)	671, 910
BspACI	CCGC	1 cut(s)	942
BspANI	GGCC	7 cut(s)	53, 205, 354, 1281, 1711, 1993, 2076
BspCNI	CTCAG	5 cut(s)	187, 553, 577, 1048, 1605
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	1 cut(s)	1289
BspLI	GGNNCC	5 cut(s)	669, 946, 1008, 2014, 2096
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	2 cut(s)	844, 1221
BspPI	GGATC	4 cut(s)	698, 1564, 1855, 2159
BspT107I	GGYRCC	2 cut(s)	2012, 2094
BsrDI	GCAATG	2 cut(s)	486, 1769
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	7 cut(s)	667, 799, 1126, 1307, 1383, 1712, 1783
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	7 cut(s)	48, 286, 671, 910, 1001, 1220, 1812
BssMI	GATC	4 cut(s)	703, 1556, 1847, 2164
BssNAI	GTATAC	2 cut(s)	804, 1123
BssNI	GRCGYC	1 cut(s)	1984
BssSI	CACGAG	1 cut(s)	2110
BssT1I	CCWWGG	5 cut(s)	48, 671, 910, 1001, 1220
Bst1107I	GTATAC	2 cut(s)	804, 1123
Bst2BI	CACGAG	1 cut(s)	2110
Bst2UI	CCWGG	3 cut(s)	288, 612, 1908
Bst4CI	ACNGT	5 cut(s)	72, 737, 1488, 1504, 1813
Bst6I	CTCTTC	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	1984
BstAPI	GCANNNNNTGC	2 cut(s)	1154, 1525
BstC8I	GCNNGC	8 cut(s)	339, 686, 940, 1329, 1521, 1635, 1995, 2078
BstDEI	CTNAG	9 cut(s)	195, 403, 540, 564, 1056, 1475, 1613, 1643, 2172
BstDSI	CCRYGG	3 cut(s)	671, 910, 1812
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	247, 1313, 1420
BstFNI	CGCG	1 cut(s)	1289
BstHHI	GCGC	1 cut(s)	1289
BstKTI	GATC	4 cut(s)	706, 1559, 1850, 2167
BstMAI	GTCTC	2 cut(s)	567, 1679
BstMBI	GATC	4 cut(s)	703, 1556, 1847, 2164
BstNI	CCWGG	3 cut(s)	288, 612, 1908
BstNSI	RCATGY	3 cut(s)	61, 907, 1523
BstPAI	GACNNNNGTC	1 cut(s)	462
BstSCI	CCNGG	4 cut(s)	286, 436, 610, 1906
BstSFI	CTRYAG	2 cut(s)	1083, 1419
BstSLI	GKGCMC	2 cut(s)	610, 1680
BstUI	CGCG	1 cut(s)	1289
BstV1I	GCAGC	3 cut(s)	488, 1069, 1132
BstX2I	RGATCY	1 cut(s)	1556
BstYI	RGATCY	1 cut(s)	1556
BstZ17I	GTATAC	2 cut(s)	804, 1123
Bsu15I	ATCGAT	1 cut(s)	714
BsuRI	GGCC	7 cut(s)	53, 205, 354, 1281, 1711, 1993, 2076
BsuTUI	ATCGAT	1 cut(s)	714
BtgI	CCRYGG	3 cut(s)	671, 910, 1812
BtgZI	GCGATG	1 cut(s)	937
BtsCI	GGATG	3 cut(s)	247, 1313, 1420
BtsI	GCAGTG	3 cut(s)	1092, 1266, 1350
BtsIMutI	CAGTG	6 cut(s)	660, 1092, 1266, 1350, 1376, 1500
BveI	ACCTGC	2 cut(s)	844, 1221
Cac8I	GCNNGC	8 cut(s)	339, 686, 940, 1329, 1521, 1635, 1995, 2078
CaiI	CAGNNNCTG	1 cut(s)	1559
CfoI	GCGC	1 cut(s)	1289
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	8 cut(s)	377, 548, 584, 944, 1224, 1457, 1709, 1767
ClaI	ATCGAT	1 cut(s)	714
CseI	GACGC	2 cut(s)	1278, 1992
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	7 cut(s)	1333, 1435, 1489, 1841, 1882, 2022, 2095
CspAI	ACCGGT	1 cut(s)	586
CviQI	GTAC	7 cut(s)	1333, 1435, 1489, 1841, 1882, 2022, 2095
DdeI	CTNAG	9 cut(s)	195, 403, 540, 564, 1056, 1475, 1613, 1643, 2172
DpnI	GATC	4 cut(s)	705, 1558, 1849, 2166
DpnII	GATC	4 cut(s)	703, 1556, 1847, 2164
EaeI	YGGCCR	4 cut(s)	203, 1279, 1991, 2074
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco130I	CCWWGG	5 cut(s)	48, 671, 910, 1001, 1220
Eco32I	GATATC	1 cut(s)	1134
Eco47I	GGWCC	7 cut(s)	377, 548, 584, 944, 1224, 1457, 1767
Eco57I	CTGAAG	1 cut(s)	1275
EcoNI	CCTNNNNNAGG	1 cut(s)	285
EcoO109I	RGGNCCY	2 cut(s)	548, 1457
EcoRI	GAATTC	2 cut(s)	1592, 1732
EcoRII	CCWGG	3 cut(s)	286, 610, 1906
EcoRV	GATATC	1 cut(s)	1134
EcoT14I	CCWWGG	5 cut(s)	48, 671, 910, 1001, 1220
ErhI	CCWWGG	5 cut(s)	48, 671, 910, 1001, 1220
FaqI	GGGAC	1 cut(s)	930
FblI	GTMKAC	4 cut(s)	803, 1122, 1292, 1660
Fnu4HI	GCNGC	3 cut(s)	477, 1083, 1146
FokI	GGATG	3 cut(s)	254, 1300, 1427
Fsp4HI	GCNGC	3 cut(s)	477, 1083, 1146
FspBI	CTAG	5 cut(s)	282, 831, 960, 1410, 1706
GlaI	GCGC	1 cut(s)	1288
GluI	GCNGC	3 cut(s)	477, 1083, 1146
GsaI	CCCAGC	1 cut(s)	1518
GsuI	CTGGAG	1 cut(s)	1719
HaeIII	GGCC	7 cut(s)	53, 205, 354, 1281, 1711, 1993, 2076
HapII	CCGG	4 cut(s)	206, 438, 587, 1482
HgaI	GACGC	2 cut(s)	1278, 1992
HhaI	GCGC	1 cut(s)	1289
Hin1I	GRCGYC	1 cut(s)	1984
Hin6I	GCGC	1 cut(s)	1287
HinP1I	GCGC	1 cut(s)	1287
HincII	GTYRAC	2 cut(s)	1293, 1547
HindII	GTYRAC	2 cut(s)	1293, 1547
HinfI	GANTC	6 cut(s)	154, 214, 411, 441, 1058, 1508
HpaII	CCGG	4 cut(s)	206, 438, 587, 1482
HphI	GGTGA	2 cut(s)	1802, 2174
Hpy166II	GTNNAC	7 cut(s)	608, 804, 1123, 1293, 1547, 1661, 1678
Hpy188III	TCNNGA	8 cut(s)	265, 790, 983, 1109, 1391, 1554, 1737, 1755
Hpy8I	GTNNAC	7 cut(s)	608, 804, 1123, 1293, 1547, 1661, 1678
Hpy99I	CGWCG	2 cut(s)	1294, 1297
HpyAV	CCTTC	7 cut(s)	144, 214, 511, 518, 958, 1717, 2091
HpyCH4III	ACNGT	5 cut(s)	72, 737, 1488, 1504, 1813
HpyCH4IV	ACGT	1 cut(s)	38
HpyF3I	CTNAG	9 cut(s)	195, 403, 540, 564, 1056, 1475, 1613, 1643, 2172
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	1984
HspAI	GCGC	1 cut(s)	1287
KpnI	GGTACC	1 cut(s)	2098
Kzo9I	GATC	4 cut(s)	703, 1556, 1847, 2164
LmnI	GCTCC	1 cut(s)	1974
Lsp1109I	GCAGC	3 cut(s)	488, 1069, 1132
LweI	GCATC	7 cut(s)	685, 964, 1069, 1322, 1405, 1888, 1986
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	5 cut(s)	282, 831, 960, 1410, 1706
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	1714, 1752
MalI	GATC	4 cut(s)	705, 1558, 1849, 2166
MboI	GATC	4 cut(s)	703, 1556, 1847, 2164
MboII	GAAGA	9 cut(s)	84, 359, 511, 704, 1309, 1352, 1805, 1818, 2162
MflI	RGATCY	1 cut(s)	1556
MhlI	GDGCHC	2 cut(s)	610, 1680
MlsI	TGGCCA	3 cut(s)	1281, 1993, 2076
MluNI	TGGCCA	3 cut(s)	1281, 1993, 2076
MlyI	GAGTC	1 cut(s)	1067
MmeI	TCCRAC	3 cut(s)	1363, 1952, 2192
Mox20I	TGGCCA	3 cut(s)	1281, 1993, 2076
MroXI	GAANNNNTTC	2 cut(s)	1470, 1825
MscI	TGGCCA	3 cut(s)	1281, 1993, 2076
MseI	TTAA	2 cut(s)	1626, 1965
Msp20I	TGGCCA	3 cut(s)	1281, 1993, 2076
MspA1I	CMGCKG	1 cut(s)	1514
MspI	CCGG	4 cut(s)	206, 438, 587, 1482
MspR9I	CCNGG	4 cut(s)	288, 438, 612, 1908
Mva1269I	GAATGC	3 cut(s)	1148, 1233, 1699
MvaI	CCWGG	3 cut(s)	288, 612, 1908
MvnI	CGCG	1 cut(s)	1289
NciI	CCSGG	1 cut(s)	438
NcoI	CCATGG	2 cut(s)	671, 910
NdeII	GATC	4 cut(s)	703, 1556, 1847, 2164
NlaIV	GGNNCC	5 cut(s)	669, 946, 1008, 2014, 2096
NmuCI	GTSAC	2 cut(s)	1714, 1752
NspI	RCATGY	3 cut(s)	61, 907, 1523
PaeI	GCATGC	1 cut(s)	1523
PciI	ACATGT	2 cut(s)	57, 903
PctI	GAATGC	3 cut(s)	1148, 1233, 1699
PdmI	GAANNNNTTC	2 cut(s)	1470, 1825
PfeI	GAWTC	5 cut(s)	154, 214, 411, 441, 1508
PflMI	CCANNNNNTGG	2 cut(s)	777, 1813
PfoI	TCCNGGA	1 cut(s)	436
PinAI	ACCGGT	1 cut(s)	586
PkrI	GCNGC	3 cut(s)	478, 1084, 1147
PleI	GAGTC	1 cut(s)	1066
PpsI	GAGTC	1 cut(s)	1066
PpuMI	RGGWCCY	2 cut(s)	548, 1457
PscI	ACATGT	2 cut(s)	57, 903
PshAI	GACNNNNGTC	1 cut(s)	462
PshBI	ATTAAT	1 cut(s)	1965
Psp5II	RGGWCCY	2 cut(s)	548, 1457
Psp6I	CCWGG	3 cut(s)	286, 610, 1906
PspFI	CCCAGC	1 cut(s)	1514
PspGI	CCWGG	3 cut(s)	286, 610, 1906
PspN4I	GGNNCC	5 cut(s)	669, 946, 1008, 2014, 2096
PspPI	GGNCC	8 cut(s)	377, 548, 584, 944, 1224, 1457, 1709, 1767
PspPPI	RGGWCCY	2 cut(s)	548, 1457
PstI	CTGCAG	1 cut(s)	1087
PstNI	CAGNNNCTG	1 cut(s)	1559
PsuI	RGATCY	1 cut(s)	1556
PvuII	CAGCTG	1 cut(s)	1514
RsaI	GTAC	7 cut(s)	1334, 1436, 1490, 1842, 1883, 2023, 2096
RsaNI	GTAC	7 cut(s)	1333, 1435, 1489, 1841, 1882, 2022, 2095
SalI	GTCGAC	1 cut(s)	1291
SaqAI	TTAA	2 cut(s)	1626, 1965
SatI	GCNGC	3 cut(s)	477, 1083, 1146
Sau3AI	GATC	4 cut(s)	703, 1556, 1847, 2164
Sau96I	GGNCC	8 cut(s)	377, 548, 584, 944, 1224, 1457, 1709, 1767
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	4 cut(s)	288, 438, 612, 1908
SduI	GDGCHC	2 cut(s)	610, 1680
SexAI	ACCWGGT	1 cut(s)	610
SfaNI	GCATC	7 cut(s)	685, 964, 1069, 1322, 1405, 1888, 1986
SfcI	CTRYAG	2 cut(s)	1083, 1419
SgrDI	CGTCGACG	1 cut(s)	1291
SinI	GGWCC	7 cut(s)	377, 548, 584, 944, 1224, 1457, 1767
SphI	GCATGC	1 cut(s)	1523
SsiI	CCGC	1 cut(s)	942
SspI	AATATT	2 cut(s)	296, 1031
SspMI	CTAG	5 cut(s)	282, 831, 960, 1410, 1706
StyD4I	CCNGG	4 cut(s)	286, 436, 610, 1906
StyI	CCWWGG	5 cut(s)	48, 671, 910, 1001, 1220
TaaI	ACNGT	5 cut(s)	72, 737, 1488, 1504, 1813
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	6 cut(s)	138, 714, 984, 1130, 1292, 1506
TfiI	GAWTC	5 cut(s)	154, 214, 411, 441, 1508
Tru1I	TTAA	2 cut(s)	1626, 1965
Tru9I	TTAA	2 cut(s)	1626, 1965
TscAI	CASTG	6 cut(s)	667, 1092, 1273, 1357, 1383, 1507
TseFI	GTSAC	2 cut(s)	1714, 1752
TseI	GCWGC	3 cut(s)	476, 1082, 1145
Tsp45I	GTSAC	2 cut(s)	1714, 1752
TspGWI	ACGGA	1 cut(s)	1168
TspRI	CASTG	6 cut(s)	667, 1092, 1273, 1357, 1383, 1507
Van91I	CCANNNNNTGG	2 cut(s)	777, 1813
VneI	GTGCAC	2 cut(s)	606, 1676
VpaK11BI	GGWCC	7 cut(s)	377, 548, 584, 944, 1224, 1457, 1767
VspI	ATTAAT	1 cut(s)	1965
XagI	CCTNNNNNAGG	1 cut(s)	285
XapI	RAATTY	8 cut(s)	488, 578, 774, 809, 922, 1592, 1732, 2131
XceI	RCATGY	3 cut(s)	61, 907, 1523
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1133, 1814
XmiI	GTMKAC	4 cut(s)	803, 1122, 1292, 1660
XmnI	GAANNNNTTC	2 cut(s)	1470, 1825
XspI	CTAG	5 cut(s)	282, 831, 960, 1410, 1706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.